
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  123 (  123),  selected  121 , name T0382TS168_4
# Molecule2: number of CA atoms  121 (  929),  selected  121 , name T0382.pdb
# PARAMETERS: T0382TS168_4.T0382.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    38        81 - 118         4.74    18.76
  LONGEST_CONTINUOUS_SEGMENT:    38        82 - 119         4.87    18.54
  LCS_AVERAGE:     25.60

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    22        32 - 53          1.99    26.69
  LCS_AVERAGE:     11.96

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20        33 - 52          0.34    27.11
  LCS_AVERAGE:      9.01

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  121
LCS_GDT     K       3     K       3      3    7   15     1    3   16   20   22   24   26   26   27   29   31   34   36   41   42   44   45   47   48   50 
LCS_GDT     L       4     L       4      4    7   15     3   15   17   20   22   24   26   26   27   29   31   34   36   41   42   44   45   47   48   50 
LCS_GDT     D       5     D       5      4    7   22     3    4    4    6    7    7   21   24   27   29   30   33   36   38   41   43   45   47   48   50 
LCS_GDT     L       6     L       6      4    7   22     4    4    5    6    7    8   20   21   24   25   29   31   34   37   40   42   45   47   48   50 
LCS_GDT     H       7     H       7      4    7   22     4    4    5    6   10   13   19   21   24   25   29   31   34   37   40   42   45   47   48   50 
LCS_GDT     Q       8     Q       8      4    7   22     4    4    5    6    7   10   12   13   24   25   27   31   34   37   40   42   45   46   48   50 
LCS_GDT     M       9     M       9      4   13   22     4    4    5    6    8   11   13   16   20   24   26   27   28   32   37   39   41   43   46   50 
LCS_GDT     T      10     T      10     12   13   22    12   12   13   14   14   14   14   14   15   17   23   27   29   30   35   37   41   42   45   47 
LCS_GDT     T      11     T      11     12   13   22    12   12   13   14   14   14   14   14   16   19   21   28   32   34   37   39   41   43   45   50 
LCS_GDT     Q      12     Q      12     12   13   22    12   12   13   14   14   14   14   16   19   20   21   26   29   32   37   39   42   44   45   47 
LCS_GDT     D      13     D      13     12   13   22    12   12   13   14   14   14   14   16   19   20   21   22   25   27   27   31   35   44   45   47 
LCS_GDT     L      14     L      14     12   13   22    12   12   13   14   14   14   14   14   16   18   21   22   25   28   35   37   42   44   45   47 
LCS_GDT     V      15     V      15     12   13   22    12   12   13   14   14   14   14   14   16   18   20   22   25   28   29   36   42   44   45   47 
LCS_GDT     A      16     A      16     12   13   22    12   12   13   14   14   14   14   14   16   18   20   21   23   26   29   32   35   40   43   45 
LCS_GDT     L      17     L      17     12   13   22    12   12   13   14   14   14   14   14   16   18   20   21   23   26   29   32   35   39   43   45 
LCS_GDT     F      18     F      18     12   13   22    12   12   13   14   14   14   14   14   16   18   20   21   23   26   29   32   34   38   41   43 
LCS_GDT     A      19     A      19     12   13   22    12   12   13   14   14   14   14   14   16   18   20   21   23   26   29   32   34   38   42   46 
LCS_GDT     K      20     K      20     12   13   22    12   12   13   14   14   14   14   14   16   18   20   21   23   26   29   32   34   38   42   46 
LCS_GDT     V      21     V      21     12   13   22    12   12   13   14   14   14   14   14   15   17   20   21   23   26   29   32   34   38   42   46 
LCS_GDT     T      22     T      22      3   13   22     3    3    5    8   10   12   13   14   16   18   18   19   20   24   25   31   34   38   42   46 
LCS_GDT     V      23     V      23     10   11   22    10   10   10   10   10   10   11   12   15   18   18   19   20   21   21   25   27   38   41   43 
LCS_GDT     E      24     E      24     10   11   22    10   10   10   10   10   10   11   12   16   18   18   19   23   26   29   32   34   38   41   43 
LCS_GDT     Q      25     Q      25     10   11   22    10   10   10   10   10   10   11   12   16   18   18   19   23   26   29   32   34   38   42   46 
LCS_GDT     D      26     D      26     10   11   22    10   10   10   10   10   11   12   14   15   16   17   19   21   24   30   37   41   44   46   48 
LCS_GDT     D      27     D      27     10   11   28    10   10   10   10   10   10   11   11   13   16   17   21   25   30   36   39   41   44   46   48 
LCS_GDT     A      28     A      28     10   11   28    10   10   10   10   10   11   12   14   15   16   18   25   28   32   36   39   41   44   46   48 
LCS_GDT     L      29     L      29     10   11   28    10   10   10   10   10   10   11   11   14   20   25   28   29   32   36   39   41   44   46   48 
LCS_GDT     L      30     L      30     10   11   28    10   10   10   10   10   12   16   21   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     G      31     G      31     10   11   28    10   10   10   10   10   10   11   13   21   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     N      32     N      32     10   22   28    10   10   10   10   10   15   16   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     Q      33     Q      33     20   22   28    11   20   20   20   20   20   20   22   23   26   26   28   29   32   32   39   40   44   46   48 
LCS_GDT     I      34     I      34     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   35   39   41   44   46   48 
LCS_GDT     S      35     S      35     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     R      36     R      36     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     F      37     F      37     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     N      38     N      38     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     R      39     R      39     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     L      40     L      40     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     F      41     F      41     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     G      42     G      42     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     V      43     V      43     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     M      44     M      44     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     A      45     A      45     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   33   38   39   41   44   46   48 
LCS_GDT     E      46     E      46     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     I      47     I      47     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     A      48     A      48     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   33   38   39   41   44   46   48 
LCS_GDT     D      49     D      49     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     E      50     E      50     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     L      51     L      51     20   22   28    19   20   20   20   20   20   20   22   23   26   26   28   29   32   33   39   40   44   46   48 
LCS_GDT     K      52     K      52     20   22   28    19   20   20   20   20   20   20   22   23   26   26   27   29   32   32   39   40   44   45   47 
LCS_GDT     A      53     A      53      3   22   34     3    3    4    7    7   15   18   22   23   26   26   28   29   32   36   39   41   44   46   48 
LCS_GDT     R      54     R      54      3    5   34     0    3    4    7    8    9   13   19   22   25   29   32   34   35   38   39   41   44   46   48 
LCS_GDT     D      55     D      55      3    5   34     3    3    5    7    8   11   14   19   22   26   30   32   34   35   38   39   41   44   46   48 
LCS_GDT     G      56     G      56      3    5   34     3    3    4    7    8    9   11   14   16   20   30   32   35   38   41   44   44   45   46   48 
LCS_GDT     D      57     D      57      3    7   34     3    3    3    6    8   11   14   19   22   26   30   32   35   38   41   44   44   45   47   48 
LCS_GDT     Q      58     Q      58      6   10   34     3    4    6    8    9   11   15   19   26   28   31   33   36   41   42   44   45   47   48   50 
LCS_GDT     R      59     R      59      6   10   34     3    5    8   12   17   24   26   26   27   29   31   34   36   41   42   44   45   47   48   50 
LCS_GDT     T      60     T      60      6   10   34     4    5    8    8    9   11   13   19   27   28   31   34   36   41   42   44   45   47   48   50 
LCS_GDT     A      61     A      61      6   10   34     4    5    8   13   16   22   24   25   27   29   31   33   36   41   42   44   45   47   48   50 
LCS_GDT     L      62     L      62      6   10   34     4    5    8    8   10   12   14   19   22   26   30   32   35   37   40   43   45   47   48   50 
LCS_GDT     L      63     L      63      6   10   34     4    5    8    8    9   12   16   19   22   26   30   32   34   35   36   39   42   44   46   50 
LCS_GDT     S      64     S      64      6   10   34     4    5    8   10   15   17   21   22   23   26   30   32   34   35   36   39   42   44   46   48 
LCS_GDT     L      65     L      65      6   10   34     4    5    8    8   10   16   18   22   23   26   30   32   34   35   36   39   41   44   46   48 
LCS_GDT     F      66     F      66      6   12   34     4    5    8   10   15   17   21   22   23   26   30   32   34   35   36   39   41   44   46   48 
LCS_GDT     E      67     E      67      5   12   34     4    5   13   14   15   17   21   22   23   26   30   32   34   35   36   39   41   44   46   48 
LCS_GDT     Y      68     Y      68      5   12   34     4    5    5    8   11   17   21   22   23   26   30   32   34   35   36   39   41   44   46   48 
LCS_GDT     P      69     P      69      5   17   34     3    5    5    8   11   15   20   22   23   26   30   32   34   35   36   39   41   44   46   48 
LCS_GDT     N      70     N      70      3   17   34     3    4    7   12   16   17   21   22   23   26   30   32   34   35   36   37   39   44   46   48 
LCS_GDT     M      71     M      71     13   17   34    10   12   12   14   16   17   21   22   23   26   30   32   34   35   36   37   39   44   46   48 
LCS_GDT     Q      72     Q      72     13   17   34    10   12   12   14   16   17   21   22   23   26   30   32   34   35   36   37   37   38   39   39 
LCS_GDT     V      73     V      73     13   17   34    10   12   12   14   16   17   21   22   23   26   30   32   34   35   36   37   37   38   39   41 
LCS_GDT     R      74     R      74     13   17   34    10   12   12   14   16   17   21   22   23   26   30   32   34   35   36   37   40   44   46   48 
LCS_GDT     L      75     L      75     13   17   34    10   12   12   14   16   17   21   22   23   26   30   32   34   35   36   37   37   43   46   48 
LCS_GDT     Q      76     Q      76     13   17   34    10   12   12   14   16   17   21   22   23   26   30   32   34   35   36   37   37   38   39   43 
LCS_GDT     A      77     A      77     13   17   34    10   12   12   14   16   17   21   22   23   26   30   32   34   35   36   37   37   38   45   48 
LCS_GDT     A      78     A      78     13   17   34    10   12   12   14   16   17   21   22   23   26   30   32   34   35   36   37   37   43   46   48 
LCS_GDT     K      79     K      79     13   17   34    10   12   12   14   16   17   21   22   23   26   30   32   34   35   36   37   37   38   42   46 
LCS_GDT     L      80     L      80     13   17   34    10   12   12   14   16   17   21   22   23   26   30   32   34   35   36   37   37   40   42   46 
LCS_GDT     T      81     T      81     13   17   38     8   12   12   14   16   17   21   22   23   26   30   32   34   36   40   42   44   46   47   50 
LCS_GDT     L      82     L      82     13   17   38     7   12   12   14   16   17   21   22   26   27   30   32   36   41   42   44   45   47   48   50 
LCS_GDT     A      83     A      83     13   17   38     4    5    8   14   16   20   23   25   27   29   31   33   36   41   42   44   45   47   48   50 
LCS_GDT     V      84     V      84      5   20   38     4    5   11   14   16   17   21   25   27   28   30   33   36   41   42   44   45   47   48   50 
LCS_GDT     A      85     A      85     17   20   38     5   16   17   20   22   24   26   26   27   29   31   34   36   41   42   44   45   47   48   50 
LCS_GDT     P      86     P      86     17   20   38    15   16   17   20   22   24   26   26   27   29   31   34   36   41   42   44   45   47   48   50 
LCS_GDT     V      87     V      87     17   20   38    15   16   17   20   22   24   26   26   27   29   31   34   36   41   42   44   45   47   48   50 
LCS_GDT     K      88     K      88     17   20   38    15   16   17   20   22   24   26   26   27   29   31   34   36   41   42   44   45   47   48   50 
LCS_GDT     A      89     A      89     17   20   38    15   16   17   20   22   24   26   26   27   29   31   34   36   41   42   44   45   47   48   50 
LCS_GDT     R      90     R      90     17   20   38    15   16   17   20   22   24   26   26   27   29   31   34   36   41   42   44   45   47   48   50 
LCS_GDT     E      91     E      91     17   20   38    15   16   17   20   22   24   26   26   27   29   31   34   36   41   42   44   45   47   48   50 
LCS_GDT     Q      92     Q      92     17   20   38    15   16   17   20   22   24   26   26   27   29   31   34   36   41   42   44   45   47   48   50 
LCS_GDT     L      93     L      93     17   20   38    15   16   17   20   22   24   26   26   27   29   31   34   36   41   42   44   45   47   48   50 
LCS_GDT     E      94     E      94     17   20   38    15   16   17   20   22   24   26   26   27   29   31   34   36   41   42   44   45   47   48   50 
LCS_GDT     A      95     A      95     17   20   38    15   16   17   20   22   24   26   26   27   29   31   34   36   41   42   44   45   47   48   50 
LCS_GDT     I      96     I      96     17   20   38    15   16   17   20   22   24   26   26   27   29   31   34   36   41   42   44   45   47   48   50 
LCS_GDT     V      97     V      97     17   20   38    15   16   17   20   22   24   26   26   27   29   31   34   36   41   42   44   45   47   48   50 
LCS_GDT     S      98     S      98     17   20   38    15   16   17   20   22   24   26   26   27   29   31   34   36   41   42   44   45   47   48   50 
LCS_GDT     S      99     S      99     17   20   38    15   16   17   20   22   24   26   26   27   29   31   34   36   41   42   44   45   47   48   50 
LCS_GDT     K     100     K     100     17   20   38    15   16   17   20   22   24   26   26   27   29   31   34   36   41   42   44   45   47   48   50 
LCS_GDT     W     101     W     101     17   20   38     4    9   14   20   22   24   26   26   27   29   31   34   36   41   42   44   45   47   48   50 
LCS_GDT     F     102     F     102      3   20   38     3    3    3    6   11   20   26   26   27   29   31   34   36   41   42   44   45   47   48   50 
LCS_GDT     P     103     P     103      3   20   38     3   11   17   20   22   24   26   26   27   29   31   34   36   41   42   44   45   47   48   50 
LCS_GDT     Q     104     Q     104      3   20   38     3    3    3    7    7    8    9   10   18   25   29   34   36   41   42   44   45   47   48   50 
LCS_GDT     A     105     A     105      4    4   38     3    3    7    7    7    8   10   13   16   24   26   30   36   38   42   44   45   47   48   50 
LCS_GDT     G     106     G     106      4    4   38     3    3    4    5    5    8   10   13   16   24   26   32   36   41   42   44   45   47   48   50 
LCS_GDT     D     107     D     107      4    4   38     3    3    4    5    5    5    7   10   14   25   29   34   36   41   42   44   45   47   48   50 
LCS_GDT     A     108     A     108      4    9   38     0    3    4    5    8    9    9   11   12   24   28   34   36   41   42   44   45   47   48   50 
LCS_GDT     G     109     G     109      7    9   38     7    7    7    8    9   13   15   17   20   22   27   34   36   41   42   44   45   47   48   50 
LCS_GDT     M     110     M     110      7    9   38     7    7    7    8    8    9   11   17   20   24   26   32   36   41   42   44   45   47   48   50 
LCS_GDT     C     111     C     111      7    9   38     7    7    7    8   15   23   26   26   27   29   31   34   36   41   42   44   45   47   48   50 
LCS_GDT     L     112     L     112      7    9   38     7    7    7    8   10   18   21   26   27   28   31   34   36   41   42   44   45   47   48   50 
LCS_GDT     D     113     D     113      7    9   38     7    7    7    8    8    9   10   13   21   26   27   34   36   41   42   44   45   47   47   50 
LCS_GDT     L     114     L     114      7    9   38     7    7    7    8    8    9   10   13   23   26   29   34   36   41   42   44   45   47   48   50 
LCS_GDT     L     115     L     115      7    9   38     7    7   10   20   22   24   26   26   27   29   31   34   36   41   42   44   45   47   48   50 
LCS_GDT     D     116     D     116      0    9   38     1    4    9   13   22   24   26   26   27   29   31   34   36   41   42   44   45   47   48   50 
LCS_GDT     D     117     D     117      3    6   38     4    8   13   20   22   24   26   26   27   29   31   34   36   41   42   44   45   47   48   50 
LCS_GDT     G     118     G     118      3    6   38     3    3    3    4   15   17   17   21   24   27   30   32   35   38   40   43   45   47   48   50 
LCS_GDT     T     119     T     119      3    6   38     3    3    3   10   15   17   17   19   21   25   28   31   34   37   40   42   45   46   48   50 
LCS_GDT     F     120     F     120      3    6   18     3    3    4    4    6    6   13   16   17   21   23   27   28   29   35   37   42   44   45   47 
LCS_GDT     K     121     K     121      3    6   18     3    3    4    4    5    6    7    9   12   14   16   16   18   19   20   23   25   27   30   31 
LCS_GDT     P     122     P     122      3    4   18     3    3    4    4    6    6    8   10   12   14   16   16   17   18   20   23   25   27   30   31 
LCS_GDT     K     123     K     123      3    4   18     2    3    4    4    4    5    8   10   12   14   16   16   17   19   20   23   25   27   30   31 
LCS_AVERAGE  LCS_A:  15.52  (   9.01   11.96   25.60 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     19     20     20     20     22     24     26     26     27     29     31     34     36     41     42     44     45     47     48     50 
GDT PERCENT_CA  15.70  16.53  16.53  16.53  18.18  19.83  21.49  21.49  22.31  23.97  25.62  28.10  29.75  33.88  34.71  36.36  37.19  38.84  39.67  41.32
GDT RMS_LOCAL    0.26   0.34   0.34   0.34   1.33   1.62   1.89   1.89   2.09   2.54   2.85   3.75   3.62   4.40   4.51   4.84   4.88   5.26   5.39   5.66
GDT RMS_ALL_CA  27.16  27.11  27.11  27.11  19.71  19.74  19.64  19.64  19.57  19.28  19.43  19.82  19.24  19.37  19.38  19.70  19.07  19.03  18.91  18.82

#      Molecule1      Molecule2       DISTANCE
LGA    K       3      K       3          3.606
LGA    L       4      L       4          3.642
LGA    D       5      D       5          6.194
LGA    L       6      L       6         10.745
LGA    H       7      H       7         11.780
LGA    Q       8      Q       8         12.321
LGA    M       9      M       9         15.159
LGA    T      10      T      10         20.304
LGA    T      11      T      11         18.048
LGA    Q      12      Q      12         19.134
LGA    D      13      D      13         21.934
LGA    L      14      L      14         20.865
LGA    V      15      V      15         21.320
LGA    A      16      A      16         24.342
LGA    L      17      L      17         26.260
LGA    F      18      F      18         25.747
LGA    A      19      A      19         28.132
LGA    K      20      K      20         31.608
LGA    V      21      V      21         32.544
LGA    T      22      T      22         31.721
LGA    V      23      V      23         35.197
LGA    E      24      E      24         33.097
LGA    Q      25      Q      25         30.376
LGA    D      26      D      26         31.752
LGA    D      27      D      27         31.700
LGA    A      28      A      28         28.888
LGA    L      29      L      29         29.050
LGA    L      30      L      30         31.062
LGA    G      31      G      31         29.343
LGA    N      32      N      32         28.556
LGA    Q      33      Q      33         29.211
LGA    I      34      I      34         23.358
LGA    S      35      S      35         22.140
LGA    R      36      R      36         24.448
LGA    F      37      F      37         20.606
LGA    N      38      N      38         16.431
LGA    R      39      R      39         19.399
LGA    L      40      L      40         18.969
LGA    F      41      F      41         14.439
LGA    G      42      G      42         15.758
LGA    V      43      V      43         18.718
LGA    M      44      M      44         15.013
LGA    A      45      A      45         15.259
LGA    E      46      E      46         19.961
LGA    I      47      I      47         18.969
LGA    A      48      A      48         17.188
LGA    D      49      D      49         22.470
LGA    E      50      E      50         25.277
LGA    L      51      L      51         22.262
LGA    K      52      K      52         25.215
LGA    A      53      A      53         25.022
LGA    R      54      R      54         20.197
LGA    D      55      D      55         17.139
LGA    G      56      G      56         12.000
LGA    D      57      D      57         10.748
LGA    Q      58      Q      58          5.649
LGA    R      59      R      59          3.246
LGA    T      60      T      60          5.578
LGA    A      61      A      61          5.190
LGA    L      62      L      62          8.686
LGA    L      63      L      63         12.699
LGA    S      64      S      64         15.278
LGA    L      65      L      65         18.181
LGA    F      66      F      66         21.070
LGA    E      67      E      67         26.374
LGA    Y      68      Y      68         27.147
LGA    P      69      P      69         34.709
LGA    N      70      N      70         37.467
LGA    M      71      M      71         38.168
LGA    Q      72      Q      72         36.177
LGA    V      73      V      73         33.325
LGA    R      74      R      74         29.169
LGA    L      75      L      75         27.074
LGA    Q      76      Q      76         25.438
LGA    A      77      A      77         21.672
LGA    A      78      A      78         17.688
LGA    K      79      K      79         16.236
LGA    L      80      L      80         15.685
LGA    T      81      T      81         10.086
LGA    L      82      L      82          6.322
LGA    A      83      A      83          5.508
LGA    V      84      V      84          6.524
LGA    A      85      A      85          0.803
LGA    P      86      P      86          1.957
LGA    V      87      V      87          2.105
LGA    K      88      K      88          1.097
LGA    A      89      A      89          1.153
LGA    R      90      R      90          1.436
LGA    E      91      E      91          0.665
LGA    Q      92      Q      92          0.773
LGA    L      93      L      93          1.593
LGA    E      94      E      94          1.325
LGA    A      95      A      95          1.409
LGA    I      96      I      96          2.351
LGA    V      97      V      97          2.502
LGA    S      98      S      98          2.059
LGA    S      99      S      99          2.890
LGA    K     100      K     100          3.201
LGA    W     101      W     101          1.393
LGA    F     102      F     102          3.817
LGA    P     103      P     103          2.107
LGA    Q     104      Q     104          6.512
LGA    A     105      A     105          8.425
LGA    G     106      G     106          7.511
LGA    D     107      D     107          6.618
LGA    A     108      A     108          7.749
LGA    G     109      G     109          8.486
LGA    M     110      M     110          8.637
LGA    C     111      C     111          3.201
LGA    L     112      L     112          4.752
LGA    D     113      D     113          8.902
LGA    L     114      L     114          7.115
LGA    L     115      L     115          1.385
LGA    D     116      D     116          2.072
LGA    D     117      D     117          2.199
LGA    G     118      G     118          8.113
LGA    T     119      T     119         10.842
LGA    F     120      F     120         14.794
LGA    K     121      K     121         19.525
LGA    P     122      P     122         23.410
LGA    K     123      K     123         23.704

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  123  121    4.0     26    1.89    22.727    19.791     1.304

LGA_LOCAL      RMSD =  1.894  Number of atoms =   26  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 19.119  Number of atoms =  121 
Std_ALL_ATOMS  RMSD = 16.406  (standard rmsd on all 121 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.719558 * X  +   0.465082 * Y  +  -0.515689 * Z  + -13.134244
  Y_new =   0.680274 * X  +   0.322892 * Y  +  -0.658004 * Z  +  53.195385
  Z_new =  -0.139514 * X  +  -0.824281 * Y  +  -0.548722 * Z  +  -0.712894 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.158128    0.983465  [ DEG:  -123.6516     56.3484 ]
  Theta =   0.139970    3.001622  [ DEG:     8.0197    171.9803 ]
  Phi   =   2.384251   -0.757342  [ DEG:   136.6075    -43.3925 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0382TS168_4                                  
REMARK     2: T0382.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0382TS168_4.T0382.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  123  121   4.0   26   1.89  19.791    16.41
REMARK  ---------------------------------------------------------- 
MOLECULE T0382TS168_4
PFRMAT TS
TARGET T0382
MODEL 4
PARENT N/A
ATOM      1  CA  MET     1       0.855  36.505   4.364  1.00 25.00           C
ATOM      2  CA  SER     2       0.935  34.132   1.382  1.00 25.00           C
ATOM      3  CA  LYS     3       1.526  35.454  -2.128  1.00 25.00           C
ATOM      4  CA  LEU     4      -2.027  35.883  -3.480  1.00 25.00           C
ATOM      5  CA  ASP     5      -2.700  39.240  -4.990  1.00 25.00           C
ATOM      6  CA  LEU     6      -0.145  41.466  -3.204  1.00 25.00           C
ATOM      7  CA  HIS     7       1.529  42.273  -6.553  1.00 25.00           C
ATOM      8  CA  GLN     8      -1.874  43.163  -8.068  1.00 25.00           C
ATOM      9  CA  MET     9      -2.634  45.441  -5.086  1.00 25.00           C
ATOM     10  CA  THR    10       0.766  47.157  -5.499  1.00 25.00           C
ATOM     11  CA  THR    11       0.076  47.676  -9.231  1.00 25.00           C
ATOM     12  CA  GLN    12      -3.351  49.177  -8.414  1.00 25.00           C
ATOM     13  CA  ASP    13      -1.740  51.531  -5.858  1.00 25.00           C
ATOM     14  CA  LEU    14       0.860  52.608  -8.455  1.00 25.00           C
ATOM     15  CA  VAL    15      -1.922  53.275 -11.001  1.00 25.00           C
ATOM     16  CA  ALA    16      -3.824  55.361  -8.413  1.00 25.00           C
ATOM     17  CA  LEU    17      -0.649  57.366  -7.659  1.00 25.00           C
ATOM     18  CA  PHE    18      -0.117  57.979 -11.402  1.00 25.00           C
ATOM     19  CA  ALA    19      -3.745  59.157 -11.749  1.00 25.00           C
ATOM     20  CA  LYS    20      -3.284  61.530  -8.778  1.00 25.00           C
ATOM     21  CA  VAL    21      -0.084  62.923 -10.355  1.00 25.00           C
ATOM     22  CA  THR    22       2.783  62.310  -8.011  1.00 25.00           C
ATOM     23  CA  VAL    23       5.036  61.611  -5.048  1.00 25.00           C
ATOM     24  CA  GLU    24       4.292  60.817  -1.377  1.00 25.00           C
ATOM     25  CA  GLN    25       1.124  62.963  -1.529  1.00 25.00           C
ATOM     26  CA  ASP    26       0.016  61.146  -4.713  1.00 25.00           C
ATOM     27  CA  ASP    27       0.616  57.763  -3.019  1.00 25.00           C
ATOM     28  CA  ALA    28      -1.437  58.889   0.012  1.00 25.00           C
ATOM     29  CA  LEU    29      -4.277  60.012  -2.299  1.00 25.00           C
ATOM     30  CA  LEU    30      -4.191  56.629  -4.092  1.00 25.00           C
ATOM     31  CA  GLY    31      -4.333  54.813  -0.723  1.00 25.00           C
ATOM     32  CA  ASN    32      -7.324  56.959   0.335  1.00 25.00           C
ATOM     33  CA  GLN    33      -9.095  56.162  -2.965  1.00 25.00           C
ATOM     34  CA  ILE    34      -8.443  52.426  -2.442  1.00 25.00           C
ATOM     35  CA  SER    35      -9.850  52.652   1.113  1.00 25.00           C
ATOM     36  CA  ARG    36     -12.968  54.443  -0.210  1.00 25.00           C
ATOM     37  CA  PHE    37     -13.430  51.727  -2.870  1.00 25.00           C
ATOM     38  CA  ASN    38     -13.105  49.012  -0.188  1.00 25.00           C
ATOM     39  CA  ARG    39     -15.709  50.804   1.976  1.00 25.00           C
ATOM     40  CA  LEU    40     -18.081  51.029  -1.021  1.00 25.00           C
ATOM     41  CA  PHE    41     -17.608  47.292  -1.709  1.00 25.00           C
ATOM     42  CA  GLY    42     -18.352  46.497   1.963  1.00 25.00           C
ATOM     43  CA  VAL    43     -21.521  48.643   1.810  1.00 25.00           C
ATOM     44  CA  MET    44     -22.629  46.825  -1.372  1.00 25.00           C
ATOM     45  CA  ALA    45     -22.029  43.442   0.321  1.00 25.00           C
ATOM     46  CA  GLU    46     -24.082  44.569   3.351  1.00 25.00           C
ATOM     47  CA  ILE    47     -26.922  45.692   1.040  1.00 25.00           C
ATOM     48  CA  ALA    48     -26.835  42.309  -0.752  1.00 25.00           C
ATOM     49  CA  ASP    49     -26.979  40.493   2.617  1.00 25.00           C
ATOM     50  CA  GLU    50     -29.968  42.639   3.674  1.00 25.00           C
ATOM     51  CA  LEU    51     -31.740  41.842   0.374  1.00 25.00           C
ATOM     52  CA  LYS    52     -31.087  38.105   0.898  1.00 25.00           C
ATOM     53  CA  ALA    53     -29.519  38.934  -2.465  1.00 25.00           C
ATOM     54  CA  ARG    54     -28.575  41.212  -5.376  1.00 25.00           C
ATOM     55  CA  ASP    55     -26.787  43.807  -7.475  1.00 25.00           C
ATOM     56  CA  GLY    56     -23.707  44.499  -9.597  1.00 25.00           C
ATOM     57  CA  ASP    57     -23.414  47.568  -7.432  1.00 25.00           C
ATOM     58  CA  GLN    58     -19.812  46.957  -6.436  1.00 25.00           C
ATOM     59  CA  ARG    59     -16.686  46.273  -8.539  1.00 25.00           C
ATOM     60  CA  THR    60     -18.717  46.732 -11.753  1.00 25.00           C
ATOM     61  CA  ALA    61     -20.114  50.042 -10.427  1.00 25.00           C
ATOM     62  CA  LEU    62     -16.572  51.219  -9.568  1.00 25.00           C
ATOM     63  CA  LEU    63     -15.381  50.286 -13.085  1.00 25.00           C
ATOM     64  CA  SER    64     -18.311  52.218 -14.617  1.00 25.00           C
ATOM     65  CA  LEU    65     -17.459  55.266 -12.461  1.00 25.00           C
ATOM     66  CA  PHE    66     -13.800  55.062 -13.571  1.00 25.00           C
ATOM     67  CA  GLU    67     -14.898  54.870 -17.236  1.00 25.00           C
ATOM     68  CA  TYR    68     -18.356  56.373 -17.414  1.00 25.00           C
ATOM     69  CA  PRO    69     -16.807  58.914 -19.839  1.00 25.00           C
ATOM     70  CA  ASN    70     -13.875  61.235 -20.794  1.00 25.00           C
ATOM     71  CA  MET    71     -11.707  64.286 -19.925  1.00 25.00           C
ATOM     72  CA  GLN    72     -11.590  66.744 -16.989  1.00 25.00           C
ATOM     73  CA  VAL    73     -15.404  66.588 -16.676  1.00 25.00           C
ATOM     74  CA  ARG    74     -15.272  62.761 -16.685  1.00 25.00           C
ATOM     75  CA  LEU    75     -12.581  62.821 -13.962  1.00 25.00           C
ATOM     76  CA  GLN    76     -14.724  65.203 -11.863  1.00 25.00           C
ATOM     77  CA  ALA    77     -17.748  62.891 -12.281  1.00 25.00           C
ATOM     78  CA  ALA    78     -15.632  59.888 -11.200  1.00 25.00           C
ATOM     79  CA  LYS    79     -14.420  61.818  -8.123  1.00 25.00           C
ATOM     80  CA  LEU    80     -18.033  62.727  -7.238  1.00 25.00           C
ATOM     81  CA  THR    81     -19.067  59.056  -7.588  1.00 25.00           C
ATOM     82  CA  LEU    82     -16.171  57.998  -5.317  1.00 25.00           C
ATOM     83  CA  ALA    83     -17.220  60.612  -2.721  1.00 25.00           C
ATOM     84  CA  VAL    84     -20.829  59.338  -2.859  1.00 25.00           C
ATOM     85  CA  ALA    85     -19.604  55.742  -2.372  1.00 25.00           C
ATOM     86  CA  PRO    86     -17.498  56.840   0.632  1.00 25.00           C
ATOM     87  CA  VAL    87     -20.531  58.630   2.136  1.00 25.00           C
ATOM     88  CA  LYS    88     -22.661  55.485   1.644  1.00 25.00           C
ATOM     89  CA  ALA    89     -19.964  53.364   3.345  1.00 25.00           C
ATOM     90  CA  ARG    90     -19.848  55.821   6.280  1.00 25.00           C
ATOM     91  CA  GLU    91     -23.662  55.665   6.594  1.00 25.00           C
ATOM     92  CA  GLN    92     -23.531  51.837   6.584  1.00 25.00           C
ATOM     93  CA  LEU    93     -20.840  51.898   9.309  1.00 25.00           C
ATOM     94  CA  GLU    94     -22.982  54.280  11.407  1.00 25.00           C
ATOM     95  CA  ALA    95     -26.006  51.967  10.988  1.00 25.00           C
ATOM     96  CA  ILE    96     -23.890  48.964  12.069  1.00 25.00           C
ATOM     97  CA  VAL    97     -22.678  50.895  15.148  1.00 25.00           C
ATOM     98  CA  SER    98     -26.292  51.804  16.032  1.00 25.00           C
ATOM     99  CA  SER    99     -27.326  48.132  15.682  1.00 25.00           C
ATOM    100  CA  LYS   100     -24.774  47.605  18.492  1.00 25.00           C
ATOM    101  CA  TRP   101     -21.181  46.424  18.421  1.00 25.00           C
ATOM    102  CA  PHE   102     -18.736  46.801  15.523  1.00 25.00           C
ATOM    103  CA  PRO   103     -16.103  45.996  18.182  1.00 25.00           C
ATOM    104  CA  GLN   104     -12.613  45.246  19.480  1.00 25.00           C
ATOM    105  CA  ALA   105     -10.056  45.665  16.644  1.00 25.00           C
ATOM    106  CA  GLY   106      -7.511  47.814  18.511  1.00 25.00           C
ATOM    107  CA  ASP   107      -6.249  49.436  15.314  1.00 25.00           C
ATOM    108  CA  ALA   108      -7.953  50.212  12.056  1.00 25.00           C
ATOM    109  CA  GLY   109      -9.230  52.140   9.084  1.00 25.00           C
ATOM    110  CA  MET   110     -10.777  52.421   5.591  1.00 25.00           C
ATOM    111  CA  CYS   111     -13.383  54.894   6.917  1.00 25.00           C
ATOM    112  CA  LEU   112     -10.614  56.972   8.554  1.00 25.00           C
ATOM    113  CA  ASP   113      -8.653  56.995   5.264  1.00 25.00           C
ATOM    114  CA  LEU   114     -11.786  58.126   3.376  1.00 25.00           C
ATOM    115  CA  LEU   115     -12.342  60.928   5.926  1.00 25.00           C
ATOM    116  CA  ASP   116     -11.708  63.649   8.511  1.00 25.00           C
ATOM    117  CA  ASP   117     -11.097  66.762  10.611  1.00 25.00           C
ATOM    118  CA  GLY   118     -10.883  69.959  12.569  1.00 25.00           C
ATOM    119  CA  THR   119      -8.554  68.762  15.385  1.00 25.00           C
ATOM    120  CA  PHE   120     -11.875  67.962  17.118  1.00 25.00           C
ATOM    121  CA  LYS   121      -9.565  67.500  20.161  1.00 25.00           C
ATOM    122  CA  PRO   122      -5.982  68.676  19.972  1.00 25.00           C
ATOM    123  CA  LYS   123      -4.031  66.792  17.283  1.00 25.00           C
TER
END
