
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  123 (  123),  selected  121 , name T0382TS168_5
# Molecule2: number of CA atoms  121 (  929),  selected  121 , name T0382.pdb
# PARAMETERS: T0382TS168_5.T0382.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    35        52 - 86          4.81    19.12
  LONGEST_CONTINUOUS_SEGMENT:    35        53 - 87          4.62    19.26
  LONGEST_CONTINUOUS_SEGMENT:    35        54 - 88          4.70    19.31
  LONGEST_CONTINUOUS_SEGMENT:    35        55 - 89          4.81    19.30
  LONGEST_CONTINUOUS_SEGMENT:    35        56 - 90          4.97    19.37
  LCS_AVERAGE:     22.93

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    22        32 - 53          1.95    20.29
  LCS_AVERAGE:     11.75

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20        33 - 52          0.34    20.87
  LCS_AVERAGE:      8.89

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  121
LCS_GDT     K       3     K       3      4    5   15     3    4    4    4    5    6    8    8   11   13   30   34   38   41   42   49   52   54   55   58 
LCS_GDT     L       4     L       4      4    5   16     3    4    4    4    5   15   21   21   23   28   32   36   41   45   49   51   52   54   55   58 
LCS_GDT     D       5     D       5      4    6   25     3    4    4    6   10   15   21   22   29   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     L       6     L       6      4    6   25     4    4    4    5   10   15   21   22   29   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     H       7     H       7      4    6   25     4    4    6   13   15   18   19   24   29   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     Q       8     Q       8      4    6   25     4    4    5    9   11   14   15   17   24   31   37   42   43   46   49   51   52   54   55   58 
LCS_GDT     M       9     M       9      4   14   25     4    4    5    8   11   14   15   22   29   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     T      10     T      10     12   14   25    12   12   12   12   14   18   19   22   29   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     T      11     T      11     12   14   25    12   12   12   12   12   18   19   21   22   24   30   36   39   41   44   48   51   54   55   58 
LCS_GDT     Q      12     Q      12     12   14   25    12   12   12   12   12   14   15   21   21   24   30   36   39   44   49   51   52   54   55   58 
LCS_GDT     D      13     D      13     12   14   25    12   12   12   12   12   14   21   24   29   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     L      14     L      14     12   14   25    12   12   12   12   12   18   19   22   24   31   37   42   43   46   49   51   52   54   55   58 
LCS_GDT     V      15     V      15     12   14   25    12   12   12   12   12   16   19   22   24   26   30   41   43   46   49   51   52   54   55   58 
LCS_GDT     A      16     A      16     12   14   25    12   12   12   12   12   18   21   24   29   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     L      17     L      17     12   14   25    12   12   12   12   17   19   24   28   30   32   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     F      18     F      18     12   14   25    12   12   12   12   12   14   14   15   17   26   30   33   36   40   44   47   52   54   55   58 
LCS_GDT     A      19     A      19     12   14   25    12   12   12   12   12   18   24   26   29   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     K      20     K      20     12   14   25    12   12   12   12   17   19   24   28   30   31   36   39   43   45   47   51   52   54   55   58 
LCS_GDT     V      21     V      21     12   14   25    12   12   12   12   12   14   17   20   25   31   32   35   35   37   39   42   47   49   52   53 
LCS_GDT     T      22     T      22      3   14   25     3    3    3   10   12   14   14   15   17   19   20   22   23   26   28   36   39   42   44   51 
LCS_GDT     V      23     V      23     10   14   25    10   10   10   10   10   10   10   13   17   19   20   22   23   23   23   26   29   42   44   51 
LCS_GDT     E      24     E      24     10   10   25    10   10   10   10   10   14   14   15   17   19   20   22   23   29   30   35   39   44   45   51 
LCS_GDT     Q      25     Q      25     10   10   25    10   10   10   10   10   10   14   15   16   19   20   22   23   26   27   30   32   34   36   40 
LCS_GDT     D      26     D      26     10   10   25    10   10   10   10   10   12   14   15   16   19   20   22   24   28   35   43   47   52   53   55 
LCS_GDT     D      27     D      27     10   10   28    10   10   10   10   10   10   11   14   16   21   23   26   30   35   40   44   47   52   53   55 
LCS_GDT     A      28     A      28     10   10   28    10   10   10   10   10   10   10   12   14   18   21   26   30   35   40   44   47   52   53   55 
LCS_GDT     L      29     L      29     10   10   28    10   10   10   10   10   10   10   12   13   18   21   25   30   35   40   44   47   52   53   55 
LCS_GDT     L      30     L      30     10   10   28    10   10   10   10   10   11   15   19   23   24   24   26   30   35   40   44   47   52   53   55 
LCS_GDT     G      31     G      31     10   10   28    10   10   10   10   10   10   10   15   19   24   24   26   30   35   40   44   47   52   53   55 
LCS_GDT     N      32     N      32     10   22   28    10   10   10   10   10   10   13   21   23   24   24   25   28   35   38   43   47   52   53   55 
LCS_GDT     Q      33     Q      33     20   22   28    11   20   20   20   20   20   20   21   23   24   24   25   27   32   36   43   46   50   53   55 
LCS_GDT     I      34     I      34     20   22   28    19   20   20   20   20   20   20   21   23   24   24   25   27   34   38   43   47   52   53   55 
LCS_GDT     S      35     S      35     20   22   28    19   20   20   20   20   20   20   21   23   24   24   26   30   34   39   44   47   52   53   55 
LCS_GDT     R      36     R      36     20   22   28    19   20   20   20   20   20   20   21   23   24   24   26   30   34   39   44   47   52   53   55 
LCS_GDT     F      37     F      37     20   22   28    19   20   20   20   20   20   20   21   23   24   24   26   30   34   38   44   47   52   53   55 
LCS_GDT     N      38     N      38     20   22   28    19   20   20   20   20   20   20   21   23   24   24   26   30   35   40   44   47   52   53   55 
LCS_GDT     R      39     R      39     20   22   28    19   20   20   20   20   20   20   21   23   24   24   26   30   35   40   44   47   52   53   55 
LCS_GDT     L      40     L      40     20   22   28    19   20   20   20   20   20   20   21   23   24   24   26   30   35   40   44   47   52   53   55 
LCS_GDT     F      41     F      41     20   22   28    19   20   20   20   20   20   20   21   23   24   24   26   30   35   40   44   47   52   53   55 
LCS_GDT     G      42     G      42     20   22   28    19   20   20   20   20   20   20   21   23   24   24   26   30   35   40   44   47   52   53   55 
LCS_GDT     V      43     V      43     20   22   28    19   20   20   20   20   20   20   21   23   24   24   26   30   35   40   44   47   52   53   55 
LCS_GDT     M      44     M      44     20   22   28    19   20   20   20   20   20   20   21   23   24   24   25   30   35   40   44   47   52   53   55 
LCS_GDT     A      45     A      45     20   22   28    19   20   20   20   20   20   20   21   23   24   24   25   30   35   40   44   47   52   53   55 
LCS_GDT     E      46     E      46     20   22   28    19   20   20   20   20   20   20   21   23   24   24   25   30   35   40   44   47   52   53   55 
LCS_GDT     I      47     I      47     20   22   28    19   20   20   20   20   20   20   21   23   24   24   25   29   35   40   44   47   52   53   55 
LCS_GDT     A      48     A      48     20   22   28    19   20   20   20   20   20   20   21   23   24   24   25   28   35   40   44   47   52   53   55 
LCS_GDT     D      49     D      49     20   22   28    19   20   20   20   20   20   20   21   23   24   24   25   29   35   40   44   47   52   53   55 
LCS_GDT     E      50     E      50     20   22   28    19   20   20   20   20   20   20   21   23   24   24   25   29   35   40   44   47   52   53   55 
LCS_GDT     L      51     L      51     20   22   28    19   20   20   20   20   20   20   21   23   24   24   25   26   31   38   44   47   52   53   55 
LCS_GDT     K      52     K      52     20   22   35    19   20   20   20   20   20   20   21   23   24   24   25   26   30   39   44   47   52   53   55 
LCS_GDT     A      53     A      53      4   22   35     3    3    4    4    6   12   19   21   23   24   25   29   33   38   41   44   49   52   55   58 
LCS_GDT     R      54     R      54      4    5   35     3    3    4    4    6    8   11   13   17   26   32   36   40   46   49   51   52   54   55   58 
LCS_GDT     D      55     D      55      4    5   35     3    3    4    7    9   14   15   22   26   32   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     G      56     G      56      4    9   35     3    3    4    5    8   14   19   24   28   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     D      57     D      57      5   13   35     3    3    7    9   13   19   24   28   30   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     Q      58     Q      58      6   13   35     3    4    6    8   11   17   23   26   30   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     R      59     R      59      6   13   35     3    5   10   16   18   19   19   22   28   31   32   36   40   46   49   51   52   54   55   58 
LCS_GDT     T      60     T      60      6   13   35     4    5    8    8   11   19   23   28   30   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     A      61     A      61      6   13   35     4    5    8    9   12   19   24   28   30   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     L      62     L      62      6   13   35     4    5    8    9   11   17   24   28   30   31   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     L      63     L      63      6   13   35     4    5    8    9   14   19   24   28   30   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     S      64     S      64      6   13   35     4    5    8   10   17   19   24   28   30   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     L      65     L      65      6   13   35     4    5    8   10   17   19   24   28   30   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     F      66     F      66      6   13   35     4    5    8   10   17   19   24   28   30   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     E      67     E      67      5   13   35     3    4    5    9   17   19   24   28   30   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     Y      68     Y      68      5   13   35     3    4    7   10   14   19   24   28   30   31   32   36   42   45   49   51   52   54   55   58 
LCS_GDT     P      69     P      69      4   13   35     3    4    4    6   11   14   20   24   30   31   32   36   40   41   49   51   52   54   55   58 
LCS_GDT     N      70     N      70      4   15   35     3    4    6   10   14   19   24   28   30   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     M      71     M      71     13   16   35    10   12   12   14   16   19   24   28   30   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     Q      72     Q      72     13   16   35    10   12   12   14   17   19   24   28   30   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     V      73     V      73     13   16   35    10   12   12   14   16   18   24   28   30   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     R      74     R      74     13   16   35    10   12   12   14   16   18   24   28   30   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     L      75     L      75     13   16   35    10   12   12   14   17   19   24   28   30   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     Q      76     Q      76     13   16   35    10   12   12   14   17   19   24   28   30   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     A      77     A      77     13   16   35    10   12   12   14   17   19   24   28   30   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     A      78     A      78     13   16   35    10   12   12   14   17   19   24   28   30   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     K      79     K      79     13   16   35    10   12   12   14   17   19   24   28   30   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     L      80     L      80     13   16   35    10   12   12   14   17   19   24   28   30   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     T      81     T      81     13   16   35     8   12   12   14   17   19   24   28   30   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     L      82     L      82     13   16   35     7   12   12   14   16   19   24   28   30   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     A      83     A      83     13   16   35     5    5    8   14   15   19   24   28   30   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     V      84     V      84      5   18   35     5    5   11   14   17   19   24   28   30   32   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     A      85     A      85     16   18   35     5   15   15   16   18   19   24   28   30   32   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     P      86     P      86     16   18   35    14   15   15   16   18   19   24   28   30   31   32   35   39   45   47   51   52   54   55   58 
LCS_GDT     V      87     V      87     16   18   35    14   15   15   16   18   19   19   22   23   25   28   31   34   36   38   41   47   51   53   55 
LCS_GDT     K      88     K      88     16   18   35    14   15   15   16   18   19   19   22   23   24   26   29   34   36   38   39   42   45   50   55 
LCS_GDT     A      89     A      89     16   18   35    14   15   15   16   18   19   19   22   23   24   26   29   31   34   38   39   45   48   54   55 
LCS_GDT     R      90     R      90     16   18   35    14   15   15   16   18   19   19   22   23   24   26   29   31   33   38   39   42   45   50   53 
LCS_GDT     E      91     E      91     16   18   27    14   15   15   16   18   19   19   22   23   24   26   29   31   33   38   39   42   45   50   52 
LCS_GDT     Q      92     Q      92     16   18   27    14   15   15   16   18   19   19   22   23   24   26   29   31   33   35   39   42   45   50   52 
LCS_GDT     L      93     L      93     16   18   27    14   15   15   16   18   19   19   22   23   24   26   29   31   33   35   39   42   45   50   52 
LCS_GDT     E      94     E      94     16   18   27    14   15   15   16   18   19   19   22   23   24   26   29   31   33   35   39   42   45   50   52 
LCS_GDT     A      95     A      95     16   18   27    14   15   15   16   18   19   19   22   23   24   26   29   31   33   35   39   42   45   50   52 
LCS_GDT     I      96     I      96     16   18   27    14   15   15   16   18   19   19   22   23   24   26   29   31   33   35   39   42   45   50   52 
LCS_GDT     V      97     V      97     16   18   27    14   15   15   16   18   19   19   22   23   23   26   28   31   33   35   39   42   45   50   52 
LCS_GDT     S      98     S      98     16   18   27    14   15   15   16   18   19   19   22   23   23   26   29   31   33   35   39   42   45   48   52 
LCS_GDT     S      99     S      99     16   18   27    14   15   15   16   18   19   19   22   23   24   26   29   31   33   35   39   42   45   50   52 
LCS_GDT     K     100     K     100     16   18   27     0    4   13   16   18   19   19   22   23   24   26   29   31   33   35   39   42   45   50   52 
LCS_GDT     W     101     W     101      3   18   27     2    3    9   14   18   19   19   22   23   24   26   29   31   33   35   39   42   45   50   52 
LCS_GDT     F     102     F     102      3   18   27     0    3    4    5   10   14   18   22   23   24   26   29   31   33   35   39   42   45   50   52 
LCS_GDT     P     103     P     103      3   14   27     2    3    7   11   16   19   19   22   23   24   26   29   31   33   35   39   42   45   50   52 
LCS_GDT     Q     104     Q     104      3    4   27     0    3    3    3    4    4    4    9   10   11   26   29   31   33   35   38   40   45   50   52 
LCS_GDT     A     105     A     105      3    4   27     0    3    3    3    4    5    7   10   12   17   19   22   28   30   35   39   42   45   50   52 
LCS_GDT     G     106     G     106      3    4   27     0    3    3    5    5    6    8   10   13   17   21   23   28   30   35   39   42   45   50   52 
LCS_GDT     D     107     D     107      3    4   27     0    3    5    6    7    7    8   10   12   15   21   23   29   32   35   39   42   45   50   52 
LCS_GDT     A     108     A     108      0    9   27     0    2    5    6    7    8    9    9   16   21   23   25   29   32   37   38   42   45   50   52 
LCS_GDT     G     109     G     109      7    9   15     7    7    7    8   12   14   15   17   18   21   23   26   29   34   38   39   42   44   50   52 
LCS_GDT     M     110     M     110      7    9   15     7    7    7    8    8    8    9   10   13   17   19   24   29   34   38   39   42   44   50   52 
LCS_GDT     C     111     C     111      7    9   15     7    7    7    8    8    8   11   15   20   24   26   28   30   34   38   41   46   48   50   54 
LCS_GDT     L     112     L     112      7    9   15     7    7    7   10   12   14   15   17   19   22   26   28   29   34   39   42   49   53   55   58 
LCS_GDT     D     113     D     113      7    9   15     7    7    7    8    8    8   10   12   16   22   25   28   29   34   38   39   42   44   50   54 
LCS_GDT     L     114     L     114      7    9   15     7    7    7    8    8    8    9    9   13   17   22   25   29   34   38   39   46   49   55   58 
LCS_GDT     L     115     L     115      7    9   15     7    7    7   10   16   18   19   21   29   31   37   42   43   46   49   51   52   54   55   58 
LCS_GDT     D     116     D     116      3    9   15     3    4    7   14   16   18   19   22   29   33   38   42   43   46   49   51   52   54   55   58 
LCS_GDT     D     117     D     117      3    7   15     2    3    6   10   16   18   19   21   27   31   37   42   43   46   49   51   52   54   55   58 
LCS_GDT     G     118     G     118      5    7   15     4    5    6    6    7    8   10   11   13   18   23   28   39   46   48   49   51   54   55   58 
LCS_GDT     T     119     T     119      5    7   15     4    5    6    6    7    8   10   11   13   21   25   29   31   34   38   39   42   45   50   52 
LCS_GDT     F     120     F     120      5    7   15     4    5    6    6    7    8   10   11   13   15   17   19   28   31   35   39   42   45   50   55 
LCS_GDT     K     121     K     121      5    7   15     4    5    6    6    7    8   10   11   13   15   16   18   23   28   32   35   42   43   50   55 
LCS_GDT     P     122     P     122      5    7   15     4    5    6    6    7    8   10   11   13   14   15   18   20   24   28   32   37   43   47   49 
LCS_GDT     K     123     K     123      3    7   15     3    3    4    5    7    8   10   11   13   15   17   18   23   28   31   34   38   40   45   50 
LCS_AVERAGE  LCS_A:  14.53  (   8.89   11.75   22.93 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     19     20     20     20     20     20     24     28     30     33     38     42     43     46     49     51     52     54     55     58 
GDT PERCENT_CA  15.70  16.53  16.53  16.53  16.53  16.53  19.83  23.14  24.79  27.27  31.40  34.71  35.54  38.02  40.50  42.15  42.98  44.63  45.45  47.93
GDT RMS_LOCAL    0.26   0.34   0.34   0.34   0.34   0.34   2.41   2.70   2.85   3.69   3.90   4.24   4.30   4.65   4.82   6.65   5.05   5.26   5.39   5.83
GDT RMS_ALL_CA  20.96  20.87  20.87  20.87  20.87  20.87  19.35  19.39  19.41  19.44  19.41  19.31  19.37  19.40  19.30  19.30  19.21  19.25  19.30  19.07

#      Molecule1      Molecule2       DISTANCE
LGA    K       3      K       3         12.721
LGA    L       4      L       4         12.368
LGA    D       5      D       5         12.500
LGA    L       6      L       6         10.121
LGA    H       7      H       7         11.444
LGA    Q       8      Q       8         16.150
LGA    M       9      M       9         12.854
LGA    T      10      T      10         13.796
LGA    T      11      T      11         15.696
LGA    Q      12      Q      12         15.063
LGA    D      13      D      13         10.080
LGA    L      14      L      14          8.941
LGA    V      15      V      15         10.988
LGA    A      16      A      16          7.544
LGA    L      17      L      17          3.228
LGA    F      18      F      18          7.085
LGA    A      19      A      19          4.905
LGA    K      20      K      20          1.752
LGA    V      21      V      21          6.114
LGA    T      22      T      22         12.044
LGA    V      23      V      23         13.266
LGA    E      24      E      24         14.694
LGA    Q      25      Q      25         19.645
LGA    D      26      D      26         16.924
LGA    D      27      D      27         15.625
LGA    A      28      A      28         20.889
LGA    L      29      L      29         23.578
LGA    L      30      L      30         21.433
LGA    G      31      G      31         24.287
LGA    N      32      N      32         29.034
LGA    Q      33      Q      33         25.792
LGA    I      34      I      34         23.777
LGA    S      35      S      35         25.912
LGA    R      36      R      36         25.517
LGA    F      37      F      37         22.092
LGA    N      38      N      38         21.891
LGA    R      39      R      39         23.916
LGA    L      40      L      40         22.375
LGA    F      41      F      41         19.377
LGA    G      42      G      42         20.453
LGA    V      43      V      43         22.032
LGA    M      44      M      44         19.599
LGA    A      45      A      45         17.622
LGA    E      46      E      46         19.801
LGA    I      47      I      47         20.422
LGA    A      48      A      48         17.481
LGA    D      49      D      49         17.254
LGA    E      50      E      50         19.893
LGA    L      51      L      51         19.398
LGA    K      52      K      52         16.936
LGA    A      53      A      53         13.868
LGA    R      54      R      54         11.461
LGA    D      55      D      55         10.112
LGA    G      56      G      56          7.170
LGA    D      57      D      57          3.874
LGA    Q      58      Q      58          4.920
LGA    R      59      R      59          6.585
LGA    T      60      T      60          3.733
LGA    A      61      A      61          2.980
LGA    L      62      L      62          4.349
LGA    L      63      L      63          2.797
LGA    S      64      S      64          1.161
LGA    L      65      L      65          1.934
LGA    F      66      F      66          2.028
LGA    E      67      E      67          2.749
LGA    Y      68      Y      68          3.004
LGA    P      69      P      69          5.413
LGA    N      70      N      70          3.002
LGA    M      71      M      71          3.392
LGA    Q      72      Q      72          1.076
LGA    V      73      V      73          3.979
LGA    R      74      R      74          3.966
LGA    L      75      L      75          1.713
LGA    Q      76      Q      76          1.245
LGA    A      77      A      77          2.396
LGA    A      78      A      78          2.391
LGA    K      79      K      79          1.927
LGA    L      80      L      80          1.194
LGA    T      81      T      81          1.047
LGA    L      82      L      82          2.546
LGA    A      83      A      83          3.262
LGA    V      84      V      84          3.498
LGA    A      85      A      85          2.847
LGA    P      86      P      86          3.305
LGA    V      87      V      87         10.536
LGA    K      88      K      88         12.788
LGA    A      89      A      89         12.331
LGA    R      90      R      90         14.310
LGA    E      91      E      91         20.172
LGA    Q      92      Q      92         22.251
LGA    L      93      L      93         23.049
LGA    E      94      E      94         26.182
LGA    A      95      A      95         31.188
LGA    I      96      I      96         32.842
LGA    V      97      V      97         33.936
LGA    S      98      S      98         38.292
LGA    S      99      S      99         42.165
LGA    K     100      K     100         43.750
LGA    W     101      W     101         43.197
LGA    F     102      F     102         41.737
LGA    P     103      P     103         42.614
LGA    Q     104      Q     104         39.224
LGA    A     105      A     105         36.331
LGA    G     106      G     106         37.140
LGA    D     107      D     107         32.784
LGA    A     108      A     108         25.534
LGA    G     109      G     109         24.040
LGA    M     110      M     110         22.658
LGA    C     111      C     111         17.917
LGA    L     112      L     112         16.692
LGA    D     113      D     113         18.867
LGA    L     114      L     114         15.581
LGA    L     115      L     115         11.914
LGA    D     116      D     116         13.313
LGA    D     117      D     117         18.402
LGA    G     118      G     118         21.205
LGA    T     119      T     119         27.000
LGA    F     120      F     120         23.278
LGA    K     121      K     121         20.785
LGA    P     122      P     122         21.326
LGA    K     123      K     123         22.850

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  123  121    4.0     28    2.70    24.587    20.812     1.000

LGA_LOCAL      RMSD =  2.700  Number of atoms =   28  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 19.289  Number of atoms =  121 
Std_ALL_ATOMS  RMSD = 14.847  (standard rmsd on all 121 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.253514 * X  +   0.962796 * Y  +  -0.093569 * Z  + -16.679419
  Y_new =  -0.591320 * X  +  -0.077692 * Y  +   0.802686 * Z  +  50.706230
  Z_new =   0.765553 * X  +   0.258822 * Y  +   0.589016 * Z  +  -4.769985 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.414016   -2.727577  [ DEG:    23.7213   -156.2787 ]
  Theta =  -0.871901   -2.269692  [ DEG:   -49.9562   -130.0438 ]
  Phi   =  -1.975819    1.165773  [ DEG:  -113.2061     66.7939 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0382TS168_5                                  
REMARK     2: T0382.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0382TS168_5.T0382.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  123  121   4.0   28   2.70  20.812    14.85
REMARK  ---------------------------------------------------------- 
MOLECULE T0382TS168_5
PFRMAT TS
TARGET T0382
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1       4.974  52.765   1.053  1.00 25.00           C
ATOM      2  CA  SER     2       6.218  50.542  -1.689  1.00 25.00           C
ATOM      3  CA  LYS     3       7.100  48.736  -4.912  1.00 25.00           C
ATOM      4  CA  LEU     4       3.856  47.383  -6.459  1.00 25.00           C
ATOM      5  CA  ASP     5       0.200  48.318  -7.042  1.00 25.00           C
ATOM      6  CA  LEU     6      -0.591  45.291  -9.251  1.00 25.00           C
ATOM      7  CA  HIS     7       0.809  42.938  -6.572  1.00 25.00           C
ATOM      8  CA  GLN     8      -1.331  44.663  -3.906  1.00 25.00           C
ATOM      9  CA  MET     9      -4.433  44.296  -6.121  1.00 25.00           C
ATOM     10  CA  THR    10      -3.660  40.580  -6.630  1.00 25.00           C
ATOM     11  CA  THR    11      -3.272  40.118  -2.849  1.00 25.00           C
ATOM     12  CA  GLN    12      -6.624  41.876  -2.265  1.00 25.00           C
ATOM     13  CA  ASP    13      -8.293  39.608  -4.860  1.00 25.00           C
ATOM     14  CA  LEU    14      -6.806  36.519  -3.154  1.00 25.00           C
ATOM     15  CA  VAL    15      -8.098  37.740   0.238  1.00 25.00           C
ATOM     16  CA  ALA    16     -11.581  38.286  -1.257  1.00 25.00           C
ATOM     17  CA  LEU    17     -11.524  34.755  -2.741  1.00 25.00           C
ATOM     18  CA  PHE    18     -10.506  33.317   0.658  1.00 25.00           C
ATOM     19  CA  ALA    19     -13.361  35.227   2.351  1.00 25.00           C
ATOM     20  CA  LYS    20     -15.832  33.884  -0.248  1.00 25.00           C
ATOM     21  CA  VAL    21     -14.563  30.320   0.352  1.00 25.00           C
ATOM     22  CA  THR    22     -16.878  27.365   0.945  1.00 25.00           C
ATOM     23  CA  VAL    23     -19.251  24.486   0.498  1.00 25.00           C
ATOM     24  CA  GLU    24     -17.806  24.299  -3.044  1.00 25.00           C
ATOM     25  CA  GLN    25     -21.019  25.824  -4.462  1.00 25.00           C
ATOM     26  CA  ASP    26     -20.846  28.649  -1.882  1.00 25.00           C
ATOM     27  CA  ASP    27     -17.190  29.309  -2.813  1.00 25.00           C
ATOM     28  CA  ALA    28     -18.131  29.422  -6.525  1.00 25.00           C
ATOM     29  CA  LEU    29     -20.957  31.890  -5.758  1.00 25.00           C
ATOM     30  CA  LEU    30     -18.532  34.087  -3.767  1.00 25.00           C
ATOM     31  CA  GLY    31     -16.046  34.023  -6.679  1.00 25.00           C
ATOM     32  CA  ASN    32     -18.832  35.016  -9.113  1.00 25.00           C
ATOM     33  CA  GLN    33     -19.848  37.903  -6.809  1.00 25.00           C
ATOM     34  CA  ILE    34     -16.207  39.075  -6.630  1.00 25.00           C
ATOM     35  CA  SER    35     -15.953  38.948 -10.449  1.00 25.00           C
ATOM     36  CA  ARG    36     -19.180  40.987 -10.757  1.00 25.00           C
ATOM     37  CA  PHE    37     -17.811  43.572  -8.285  1.00 25.00           C
ATOM     38  CA  ASN    38     -14.557  43.803 -10.290  1.00 25.00           C
ATOM     39  CA  ARG    39     -16.554  44.304 -13.519  1.00 25.00           C
ATOM     40  CA  LEU    40     -18.613  47.067 -11.846  1.00 25.00           C
ATOM     41  CA  PHE    41     -15.399  48.773 -10.651  1.00 25.00           C
ATOM     42  CA  GLY    42     -13.954  48.585 -14.193  1.00 25.00           C
ATOM     43  CA  VAL    43     -17.167  50.111 -15.612  1.00 25.00           C
ATOM     44  CA  MET    44     -16.993  52.936 -13.032  1.00 25.00           C
ATOM     45  CA  ALA    45     -13.338  53.596 -13.963  1.00 25.00           C
ATOM     46  CA  GLU    46     -14.279  53.709 -17.674  1.00 25.00           C
ATOM     47  CA  ILE    47     -17.105  56.177 -16.907  1.00 25.00           C
ATOM     48  CA  ALA    48     -14.680  58.374 -14.917  1.00 25.00           C
ATOM     49  CA  ASP    49     -12.194  58.310 -17.829  1.00 25.00           C
ATOM     50  CA  GLU    50     -14.980  59.302 -20.262  1.00 25.00           C
ATOM     51  CA  LEU    51     -15.996  62.189 -17.959  1.00 25.00           C
ATOM     52  CA  LYS    52     -12.355  63.361 -17.780  1.00 25.00           C
ATOM     53  CA  ALA    53     -10.813  61.710 -14.766  1.00 25.00           C
ATOM     54  CA  ARG    54      -9.514  58.556 -13.078  1.00 25.00           C
ATOM     55  CA  ASP    55      -8.932  56.249 -10.109  1.00 25.00           C
ATOM     56  CA  GLY    56     -12.274  55.089  -8.847  1.00 25.00           C
ATOM     57  CA  ASP    57     -15.688  53.370  -8.427  1.00 25.00           C
ATOM     58  CA  GLN    58     -17.458  50.565  -6.511  1.00 25.00           C
ATOM     59  CA  ARG    59     -21.243  51.143  -6.447  1.00 25.00           C
ATOM     60  CA  THR    60     -21.848  47.423  -7.127  1.00 25.00           C
ATOM     61  CA  ALA    61     -19.454  46.490  -4.286  1.00 25.00           C
ATOM     62  CA  LEU    62     -21.283  48.887  -1.924  1.00 25.00           C
ATOM     63  CA  LEU    63     -24.643  47.342  -2.917  1.00 25.00           C
ATOM     64  CA  SER    64     -23.249  43.834  -2.266  1.00 25.00           C
ATOM     65  CA  LEU    65     -21.973  44.952   1.168  1.00 25.00           C
ATOM     66  CA  PHE    66     -25.412  46.423   1.993  1.00 25.00           C
ATOM     67  CA  GLU    67     -27.094  43.147   0.941  1.00 25.00           C
ATOM     68  CA  TYR    68     -26.409  42.330   4.638  1.00 25.00           C
ATOM     69  CA  PRO    69     -24.578  44.137   7.402  1.00 25.00           C
ATOM     70  CA  ASN    70     -21.472  42.203   8.631  1.00 25.00           C
ATOM     71  CA  MET    71     -18.537  39.735   8.694  1.00 25.00           C
ATOM     72  CA  GLN    72     -15.742  42.131   9.751  1.00 25.00           C
ATOM     73  CA  VAL    73     -13.954  41.555   6.414  1.00 25.00           C
ATOM     74  CA  ARG    74     -17.208  42.255   4.520  1.00 25.00           C
ATOM     75  CA  LEU    75     -17.705  45.484   6.520  1.00 25.00           C
ATOM     76  CA  GLN    76     -14.117  46.558   5.723  1.00 25.00           C
ATOM     77  CA  ALA    77     -14.705  45.853   2.005  1.00 25.00           C
ATOM     78  CA  ALA    78     -17.928  47.919   2.096  1.00 25.00           C
ATOM     79  CA  LYS    79     -16.059  50.803   3.787  1.00 25.00           C
ATOM     80  CA  LEU    80     -13.324  50.632   1.112  1.00 25.00           C
ATOM     81  CA  THR    81     -15.980  50.703  -1.645  1.00 25.00           C
ATOM     82  CA  LEU    82     -17.632  53.746  -0.008  1.00 25.00           C
ATOM     83  CA  ALA    83     -14.240  55.514   0.185  1.00 25.00           C
ATOM     84  CA  VAL    84     -13.606  54.753  -3.515  1.00 25.00           C
ATOM     85  CA  ALA    85     -17.057  56.146  -4.418  1.00 25.00           C
ATOM     86  CA  PRO    86     -16.331  59.320  -2.401  1.00 25.00           C
ATOM     87  CA  VAL    87     -12.970  59.720  -4.193  1.00 25.00           C
ATOM     88  CA  LYS    88     -14.701  59.304  -7.584  1.00 25.00           C
ATOM     89  CA  ALA    89     -17.299  61.944  -6.609  1.00 25.00           C
ATOM     90  CA  ARG    90     -14.505  64.340  -5.553  1.00 25.00           C
ATOM     91  CA  GLU    91     -12.716  63.765  -8.890  1.00 25.00           C
ATOM     92  CA  GLN    92     -15.971  64.464 -10.784  1.00 25.00           C
ATOM     93  CA  LEU    93     -16.468  67.694  -8.785  1.00 25.00           C
ATOM     94  CA  GLU    94     -12.879  68.768  -9.582  1.00 25.00           C
ATOM     95  CA  ALA    95     -13.467  68.062 -13.299  1.00 25.00           C
ATOM     96  CA  ILE    96     -16.690  70.129 -13.207  1.00 25.00           C
ATOM     97  CA  VAL    97     -14.821  73.013 -11.517  1.00 25.00           C
ATOM     98  CA  SER    98     -12.086  72.841 -14.192  1.00 25.00           C
ATOM     99  CA  SER    99     -14.743  72.913 -16.949  1.00 25.00           C
ATOM    100  CA  LYS   100     -18.296  74.058 -16.609  1.00 25.00           C
ATOM    101  CA  TRP   101     -21.889  72.921 -15.839  1.00 25.00           C
ATOM    102  CA  PHE   102     -23.365  69.594 -14.735  1.00 25.00           C
ATOM    103  CA  PRO   103     -27.139  70.066 -14.859  1.00 25.00           C
ATOM    104  CA  GLN   104     -30.524  68.461 -14.884  1.00 25.00           C
ATOM    105  CA  ALA   105     -31.363  64.801 -14.408  1.00 25.00           C
ATOM    106  CA  GLY   106     -33.790  62.520 -12.513  1.00 25.00           C
ATOM    107  CA  ASP   107     -33.167  59.429 -10.355  1.00 25.00           C
ATOM    108  CA  ALA   108     -30.391  57.813  -8.210  1.00 25.00           C
ATOM    109  CA  GLY   109     -27.009  57.173  -6.572  1.00 25.00           C
ATOM    110  CA  MET   110     -23.559  55.839  -5.580  1.00 25.00           C
ATOM    111  CA  CYS   111     -22.592  59.285  -4.217  1.00 25.00           C
ATOM    112  CA  LEU   112     -25.846  59.429  -2.202  1.00 25.00           C
ATOM    113  CA  ASP   113     -25.152  55.939  -0.784  1.00 25.00           C
ATOM    114  CA  LEU   114     -21.607  57.013   0.190  1.00 25.00           C
ATOM    115  CA  LEU   115     -23.001  60.136   1.915  1.00 25.00           C
ATOM    116  CA  ASP   116     -25.365  62.734   3.380  1.00 25.00           C
ATOM    117  CA  ASP   117     -27.761  64.887   5.363  1.00 25.00           C
ATOM    118  CA  GLY   118     -30.737  64.222   7.661  1.00 25.00           C
ATOM    119  CA  THR   119     -32.332  62.738  10.762  1.00 25.00           C
ATOM    120  CA  PHE   120     -29.078  61.876  12.570  1.00 25.00           C
ATOM    121  CA  LYS   121     -26.372  64.602  12.844  1.00 25.00           C
ATOM    122  CA  PRO   122     -23.469  63.421  15.061  1.00 25.00           C
ATOM    123  CA  LYS   123     -21.376  60.355  15.610  1.00 25.00           C
TER
END
