
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  123 (  123),  selected  121 , name T0382TS393_1
# Molecule2: number of CA atoms  121 (  929),  selected  121 , name T0382.pdb
# PARAMETERS: T0382TS393_1.T0382.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    38        80 - 117         4.93    21.91
  LONGEST_CONTINUOUS_SEGMENT:    38        81 - 118         4.87    21.49
  LCS_AVERAGE:     26.04

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    22        32 - 53          2.00    25.14
  LCS_AVERAGE:     11.67

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20        33 - 52          0.34    25.35
  LCS_AVERAGE:      9.00

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  121
LCS_GDT     K       3     K       3      4    7   18     3    3    5    5    5   10   20   22   23   25   26   27   32   36   37   39   41   43   45   46 
LCS_GDT     L       4     L       4      4    7   18     3    4   16   16   18   19   20   22   23   25   26   27   32   36   37   39   41   43   45   46 
LCS_GDT     D       5     D       5      4    7   20     3    4    5    6    7    9   19   21   23   25   25   27   30   35   35   38   41   43   45   46 
LCS_GDT     L       6     L       6      4    7   23     4    4    5   16   17   19   20   22   23   25   26   27   31   36   37   39   41   43   45   46 
LCS_GDT     H       7     H       7      4    7   23     4    4    5    6   17   19   20   21   23   25   26   27   31   36   37   38   41   43   45   46 
LCS_GDT     Q       8     Q       8      4    7   23     4    4    4    6    7    9    9   11   12   15   22   25   27   30   33   35   38   39   43   44 
LCS_GDT     M       9     M       9      4   14   23     4    4    4    7    8   11   16   18   20   23   25   29   31   37   37   38   40   42   43   45 
LCS_GDT     T      10     T      10     12   14   23    12   14   14   15   15   16   17   19   22   26   28   31   34   37   37   38   40   42   43   45 
LCS_GDT     T      11     T      11     12   14   23    12   14   14   15   15   16   17   19   22   26   28   31   34   37   37   38   40   42   43   45 
LCS_GDT     Q      12     Q      12     12   14   23    12   14   14   15   15   16   17   19   22   26   28   31   34   37   37   38   40   42   43   45 
LCS_GDT     D      13     D      13     12   14   23    12   14   14   15   15   16   17   19   22   26   28   31   34   37   37   38   40   42   43   45 
LCS_GDT     L      14     L      14     12   14   23    12   14   14   15   15   16   17   19   22   26   28   31   34   37   37   38   40   42   43   45 
LCS_GDT     V      15     V      15     12   14   23    12   14   14   15   15   16   17   19   22   26   28   31   34   37   37   38   40   42   43   45 
LCS_GDT     A      16     A      16     12   14   23    12   14   14   15   15   16   17   19   22   26   28   31   34   37   37   38   40   42   43   45 
LCS_GDT     L      17     L      17     12   14   23    12   14   14   15   15   16   17   19   22   26   28   31   34   37   37   38   40   42   43   45 
LCS_GDT     F      18     F      18     12   14   23    12   14   14   15   15   16   17   19   22   26   28   31   34   37   37   38   40   42   43   45 
LCS_GDT     A      19     A      19     12   14   23    12   14   14   15   15   16   17   19   22   26   28   31   34   37   37   38   40   42   43   45 
LCS_GDT     K      20     K      20     12   14   23    12   14   14   15   15   16   17   19   22   26   28   31   34   37   37   38   40   42   43   45 
LCS_GDT     V      21     V      21     12   14   23    12   14   14   15   15   16   17   19   22   26   28   31   34   37   37   38   40   42   43   45 
LCS_GDT     T      22     T      22      3   14   23     3    3    3    4   10   16   17   18   21   23   25   31   34   37   37   38   40   42   43   45 
LCS_GDT     V      23     V      23     10   14   23    10   10   10   10   10   10   12   18   20   22   25   27   34   37   37   38   40   42   43   45 
LCS_GDT     E      24     E      24     10   10   23    10   10   10   10   14   16   17   19   22   26   28   31   34   37   37   38   40   42   43   45 
LCS_GDT     Q      25     Q      25     10   10   23    10   10   10   13   15   16   17   19   22   26   28   31   34   37   37   38   40   42   43   45 
LCS_GDT     D      26     D      26     10   10   23    10   10   10   10   10   15   17   19   22   26   28   31   34   37   37   39   43   45   46   48 
LCS_GDT     D      27     D      27     10   10   28    10   10   10   10   10   10   11   18   20   24   28   30   34   37   37   39   43   44   46   48 
LCS_GDT     A      28     A      28     10   10   28    10   10   10   10   10   12   13   14   15   19   24   26   28   32   36   39   43   45   46   48 
LCS_GDT     L      29     L      29     10   10   28    10   10   10   10   10   10   10   10   14   20   23   25   28   31   36   39   43   45   46   48 
LCS_GDT     L      30     L      30     10   10   28    10   10   10   10   10   11   15   21   23   24   24   26   28   31   36   39   43   45   46   48 
LCS_GDT     G      31     G      31     10   10   28    10   10   10   10   10   11   12   13   20   24   24   26   28   31   36   39   43   45   46   48 
LCS_GDT     N      32     N      32     10   22   28    10   10   10   10   10   14   15   21   23   24   24   26   28   31   36   39   43   45   46   48 
LCS_GDT     Q      33     Q      33     20   22   28    11   20   20   20   20   20   20   21   23   24   24   26   28   30   32   33   42   45   46   47 
LCS_GDT     I      34     I      34     20   22   28    19   20   20   20   20   20   20   21   23   24   24   26   28   30   32   37   43   45   46   48 
LCS_GDT     S      35     S      35     20   22   28    19   20   20   20   20   20   20   21   23   24   24   26   28   30   36   39   43   45   46   48 
LCS_GDT     R      36     R      36     20   22   28    19   20   20   20   20   20   20   21   23   24   24   26   28   30   36   39   43   45   46   48 
LCS_GDT     F      37     F      37     20   22   28    19   20   20   20   20   20   20   21   23   24   24   26   28   30   35   39   43   45   46   48 
LCS_GDT     N      38     N      38     20   22   28    19   20   20   20   20   20   20   21   23   24   24   26   28   31   36   39   43   45   46   48 
LCS_GDT     R      39     R      39     20   22   28    19   20   20   20   20   20   20   21   23   24   24   26   28   31   36   39   43   45   46   48 
LCS_GDT     L      40     L      40     20   22   28    19   20   20   20   20   20   20   21   23   24   24   26   28   31   36   39   43   45   46   48 
LCS_GDT     F      41     F      41     20   22   28    19   20   20   20   20   20   20   21   23   24   24   26   28   33   37   39   43   45   46   48 
LCS_GDT     G      42     G      42     20   22   28    19   20   20   20   20   20   20   21   23   24   24   26   28   31   36   39   43   45   46   48 
LCS_GDT     V      43     V      43     20   22   28    19   20   20   20   20   20   20   21   23   24   24   26   28   31   36   39   43   45   46   48 
LCS_GDT     M      44     M      44     20   22   28    19   20   20   20   20   20   20   21   23   24   29   33   34   36   40   42   44   45   46   48 
LCS_GDT     A      45     A      45     20   22   28    19   20   20   20   20   20   20   21   23   24   28   29   33   36   40   42   44   45   46   48 
LCS_GDT     E      46     E      46     20   22   28    19   20   20   20   20   20   20   21   23   24   24   26   28   31   36   39   43   45   46   48 
LCS_GDT     I      47     I      47     20   22   28    19   20   20   20   20   20   20   21   23   24   24   26   30   33   39   41   44   45   46   48 
LCS_GDT     A      48     A      48     20   22   28    19   20   20   20   20   20   20   21   23   26   30   31   33   36   40   42   44   45   46   48 
LCS_GDT     D      49     D      49     20   22   28    19   20   20   20   20   20   20   21   23   24   24   26   28   31   36   39   43   45   46   48 
LCS_GDT     E      50     E      50     20   22   28    19   20   20   20   20   20   20   21   23   24   24   26   28   31   36   39   43   45   46   48 
LCS_GDT     L      51     L      51     20   22   28    19   20   20   20   20   20   20   21   23   24   24   28   31   33   35   37   42   45   46   48 
LCS_GDT     K      52     K      52     20   22   35    19   20   20   20   20   20   20   21   23   24   24   26   28   30   32   33   42   44   45   47 
LCS_GDT     A      53     A      53      4   22   36     3    3    4    4    6   12   19   21   23   24   24   26   28   31   36   39   43   45   46   48 
LCS_GDT     R      54     R      54      4    5   36     3    3    4    4    6    8   11   18   21   26   30   30   32   33   36   39   43   45   46   48 
LCS_GDT     D      55     D      55      4    5   36     3    3    4    4    9   15   20   25   27   29   30   31   33   37   37   39   43   45   46   48 
LCS_GDT     G      56     G      56      4   10   36     3    5    6    8   10   12   19   22   23   27   30   31   34   37   37   39   43   45   46   48 
LCS_GDT     D      57     D      57      4   10   36     3    3    4    7    8   11   19   25   27   29   30   32   34   37   40   42   44   45   46   48 
LCS_GDT     Q      58     Q      58      6   10   36     3    4    6    8   19   20   21   25   27   29   30   32   34   37   40   42   44   45   46   48 
LCS_GDT     R      59     R      59      6   10   36     3    5    8   11   15   20   21   22   25   28   30   32   34   37   40   42   44   45   46   48 
LCS_GDT     T      60     T      60      6   11   36     4    5    8    8   10   13   20   25   27   29   30   31   32   35   36   39   43   45   46   48 
LCS_GDT     A      61     A      61      6   11   36     4    5    8   11   15   18   21   25   27   29   30   31   32   36   37   39   43   45   46   48 
LCS_GDT     L      62     L      62      6   11   36     4    5    8    9   11   15   20   25   27   29   30   31   32   36   37   39   43   45   46   48 
LCS_GDT     L      63     L      63      6   11   36     4    5    8    9   11   15   20   25   27   29   30   31   32   33   36   39   43   45   46   48 
LCS_GDT     S      64     S      64      6   11   36     4    5    8   12   16   18   22   25   27   29   30   31   32   33   36   39   43   45   46   48 
LCS_GDT     L      65     L      65      6   11   36     4    5    8   12   16   18   22   25   27   29   30   31   32   33   36   39   43   45   46   48 
LCS_GDT     F      66     F      66      6   11   36     4    5    8   12   16   18   22   25   27   29   30   31   32   33   36   39   43   45   46   48 
LCS_GDT     E      67     E      67      6   11   36     4    4    8   12   16   18   22   25   27   29   30   31   32   33   36   39   43   45   46   48 
LCS_GDT     Y      68     Y      68      6   11   36     4    4    8   12   16   18   22   25   27   29   30   31   32   33   36   39   43   45   46   48 
LCS_GDT     P      69     P      69      6   11   36     3    3    6   10   16   18   22   25   27   29   30   31   32   33   36   39   43   45   46   48 
LCS_GDT     N      70     N      70      6   14   36     3    4    7   10   16   17   22   25   27   29   30   31   32   33   36   39   43   45   46   48 
LCS_GDT     M      71     M      71     13   16   36    10   12   12   14   15   18   22   25   27   29   30   31   32   33   34   35   41   45   46   48 
LCS_GDT     Q      72     Q      72     13   16   36    10   12   12   14   16   18   22   25   27   29   30   31   32   33   34   34   35   36   37   41 
LCS_GDT     V      73     V      73     13   16   36    10   12   12   14   15   16   22   24   27   29   30   31   32   33   34   34   35   36   40   47 
LCS_GDT     R      74     R      74     13   16   36    10   12   12   14   15   15   22   25   27   29   30   31   32   33   34   38   43   45   46   48 
LCS_GDT     L      75     L      75     13   16   36    10   12   12   14   16   18   22   25   27   29   30   31   32   33   34   34   36   42   46   48 
LCS_GDT     Q      76     Q      76     13   16   36    10   12   12   14   16   18   22   25   27   29   30   31   32   33   34   34   35   36   42   44 
LCS_GDT     A      77     A      77     13   16   36    10   12   12   14   16   18   22   25   27   29   30   31   32   33   34   34   35   38   46   48 
LCS_GDT     A      78     A      78     13   16   36    10   12   12   14   16   18   22   25   27   29   30   31   32   33   34   36   38   42   46   48 
LCS_GDT     K      79     K      79     13   16   36    10   12   12   14   16   18   22   25   27   29   30   31   34   37   37   38   40   42   43   45 
LCS_GDT     L      80     L      80     13   16   38    10   12   12   14   16   18   22   25   27   29   30   31   34   37   37   38   40   42   43   45 
LCS_GDT     T      81     T      81     13   16   38     8   12   12   14   16   18   22   25   27   29   30   33   34   37   39   42   44   44   44   46 
LCS_GDT     L      82     L      82     13   16   38     7   12   12   15   16   18   22   25   27   29   30   33   34   37   40   42   44   44   45   46 
LCS_GDT     A      83     A      83     13   16   38     4    5    8   14   15   18   22   24   26   29   29   33   34   37   40   42   44   44   45   46 
LCS_GDT     V      84     V      84      5   18   38     4    5   11   14   15   18   22   24   26   28   30   33   34   37   40   42   44   44   45   46 
LCS_GDT     A      85     A      85     16   19   38    11   15   16   16   19   20   22   24   26   29   30   33   34   37   40   42   44   44   45   46 
LCS_GDT     P      86     P      86     16   19   38    14   15   16   16   19   20   22   24   27   29   30   33   34   37   40   42   44   44   45   46 
LCS_GDT     V      87     V      87     16   19   38    14   15   16   16   19   20   21   23   25   28   30   33   34   37   40   42   44   44   45   46 
LCS_GDT     K      88     K      88     16   19   38    14   15   16   16   19   20   21   23   25   28   30   33   34   37   40   42   44   44   45   46 
LCS_GDT     A      89     A      89     16   19   38    14   15   16   16   19   20   21   23   25   28   30   33   34   37   40   42   44   44   45   46 
LCS_GDT     R      90     R      90     16   19   38    14   15   16   16   19   20   21   23   25   28   30   33   34   37   40   42   44   44   45   46 
LCS_GDT     E      91     E      91     16   19   38    14   15   16   16   19   20   21   23   25   28   30   33   34   37   40   42   44   44   45   46 
LCS_GDT     Q      92     Q      92     16   19   38    14   15   16   16   19   20   21   23   25   28   30   33   34   36   40   42   44   44   45   46 
LCS_GDT     L      93     L      93     16   19   38    14   15   16   16   19   20   21   23   25   28   30   33   34   36   40   42   44   44   45   46 
LCS_GDT     E      94     E      94     16   19   38    14   15   16   16   19   20   21   23   25   28   30   33   34   36   40   42   44   44   45   46 
LCS_GDT     A      95     A      95     16   19   38    14   15   16   16   19   20   21   23   25   28   30   33   34   36   40   42   44   44   45   46 
LCS_GDT     I      96     I      96     16   19   38    14   15   16   16   19   20   21   23   25   28   30   33   34   36   40   42   44   44   45   46 
LCS_GDT     V      97     V      97     16   19   38    14   15   16   16   19   20   21   22   25   28   30   33   34   36   40   42   44   44   45   46 
LCS_GDT     S      98     S      98     16   19   38    14   15   16   16   19   20   21   23   25   28   30   33   34   36   40   42   44   44   45   46 
LCS_GDT     S      99     S      99     16   19   38    14   15   16   16   19   20   21   23   25   28   30   33   34   36   40   42   44   44   45   46 
LCS_GDT     K     100     K     100     16   19   38     3    5   14   16   19   20   21   23   25   28   30   33   34   36   40   42   44   44   45   46 
LCS_GDT     W     101     W     101      3   19   38     3    5   14   16   19   20   21   23   25   28   30   33   34   36   40   42   44   44   45   46 
LCS_GDT     F     102     F     102      3   19   38     3    3    4    6    9   12   21   23   25   28   30   33   34   36   40   42   44   44   45   46 
LCS_GDT     P     103     P     103      3   19   38     3    4   10   16   19   20   21   23   25   28   30   33   34   36   40   42   44   44   45   46 
LCS_GDT     Q     104     Q     104      3    4   38     3    3    3    4    4    6    7    9   11   24   26   32   33   36   40   42   44   44   45   46 
LCS_GDT     A     105     A     105      3    4   38     3    3    3    5    5    6    8   10   11   21   23   28   33   36   40   42   44   44   45   46 
LCS_GDT     G     106     G     106      3    4   38     3    3    3    5    5    7    8   10   11   15   23   30   33   36   40   42   44   44   44   46 
LCS_GDT     D     107     D     107      3    4   38     3    3    3    5    6    6   16   22   25   28   30   33   34   36   40   42   44   44   45   46 
LCS_GDT     A     108     A     108      3    9   38     0    0    4    5    6    8    9   16   24   27   30   33   34   36   40   42   44   44   45   46 
LCS_GDT     G     109     G     109      8    9   38     7    7    8    8    8    8   10   13   14   21   23   32   34   36   40   42   44   44   44   46 
LCS_GDT     M     110     M     110      8    9   38     7    7    8    8    8    8    9   13   14   15   26   32   34   36   40   42   44   44   44   46 
LCS_GDT     C     111     C     111      8    9   38     7    7    8    8    9   16   21   23   25   28   30   33   34   36   40   42   44   44   45   46 
LCS_GDT     L     112     L     112      8    9   38     7    7    8    9   11   16   21   23   25   28   30   33   34   36   40   42   44   44   45   46 
LCS_GDT     D     113     D     113      8    9   38     7    7    8    8    8   11   18   22   24   27   30   33   34   36   40   42   44   44   44   46 
LCS_GDT     L     114     L     114      8    9   38     7    7    8    8   10   16   21   23   25   28   30   33   34   36   40   42   44   44   45   46 
LCS_GDT     L     115     L     115      8    9   38     7    7    9   13   16   20   21   23   25   28   30   33   34   36   40   42   44   44   45   46 
LCS_GDT     D     116     D     116      8    9   38     1    3    8   10   12   17   21   23   25   28   30   33   34   36   40   42   44   44   45   46 
LCS_GDT     D     117     D     117      4    5   38     3    4    5    5   10   16   20   22   25   28   30   33   33   36   40   42   44   44   45   46 
LCS_GDT     G     118     G     118      4    5   38     3    4    5    7   10   11   15   16   18   24   28   29   32   36   37   39   41   43   45   46 
LCS_GDT     T     119     T     119      4    5   17     3    4    5    7   10   11   11   14   15   19   25   27   32   36   37   39   41   43   45   46 
LCS_GDT     F     120     F     120      4    5   17     3    4    5    5    7   10   11   14   15   18   25   27   32   36   37   39   41   42   45   46 
LCS_GDT     K     121     K     121      4    5   17     3    4    4    5    5    7    8   11   12   15   18   21   24   27   29   31   34   36   38   42 
LCS_GDT     P     122     P     122      4    5   17     3    4    4    5    6    7    8   11   12   15   18   21   24   27   29   31   34   36   38   40 
LCS_GDT     K     123     K     123      3    5   17     3    3    4    5    6    6    8   11   12   15   18   21   24   27   29   31   34   36   38   40 
LCS_AVERAGE  LCS_A:  15.57  (   9.00   11.67   26.04 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     19     20     20     20     20     20     22     25     27     29     30     33     34     37     40     42     44     45     46     48 
GDT PERCENT_CA  15.70  16.53  16.53  16.53  16.53  16.53  18.18  20.66  22.31  23.97  24.79  27.27  28.10  30.58  33.06  34.71  36.36  37.19  38.02  39.67
GDT RMS_LOCAL    0.26   0.34   0.34   0.34   0.34   0.34   2.43   3.00   3.14   3.31   3.27   3.85   4.01   4.52   4.61   4.84   5.06   6.71   6.75   7.24
GDT RMS_ALL_CA  25.37  25.35  25.35  25.35  25.35  25.35  25.83  24.54  24.64  24.91  21.31  21.73  22.27  20.38  22.12  22.12  22.20  22.27  22.30  22.36

#      Molecule1      Molecule2       DISTANCE
LGA    K       3      K       3         47.221
LGA    L       4      L       4         41.601
LGA    D       5      D       5         36.255
LGA    L       6      L       6         32.839
LGA    H       7      H       7         28.317
LGA    Q       8      Q       8         29.931
LGA    M       9      M       9         30.775
LGA    T      10      T      10         25.471
LGA    T      11      T      11         20.498
LGA    Q      12      Q      12         23.718
LGA    D      13      D      13         27.882
LGA    L      14      L      14         24.113
LGA    V      15      V      15         21.737
LGA    A      16      A      16         27.433
LGA    L      17      L      17         28.495
LGA    F      18      F      18         23.558
LGA    A      19      A      19         25.500
LGA    K      20      K      20         30.758
LGA    V      21      V      21         28.824
LGA    T      22      T      22         27.171
LGA    V      23      V      23         28.261
LGA    E      24      E      24         32.841
LGA    Q      25      Q      25         27.596
LGA    D      26      D      26         23.474
LGA    D      27      D      27         29.698
LGA    A      28      A      28         31.103
LGA    L      29      L      29         25.067
LGA    L      30      L      30         27.329
LGA    G      31      G      31         34.028
LGA    N      32      N      32         31.770
LGA    Q      33      Q      33         30.233
LGA    I      34      I      34         32.039
LGA    S      35      S      35         33.991
LGA    R      36      R      36         29.235
LGA    F      37      F      37         26.288
LGA    N      38      N      38         29.409
LGA    R      39      R      39         28.411
LGA    L      40      L      40         23.411
LGA    F      41      F      41         23.686
LGA    G      42      G      42         25.644
LGA    V      43      V      43         22.493
LGA    M      44      M      44         19.113
LGA    A      45      A      45         21.164
LGA    E      46      E      46         21.018
LGA    I      47      I      47         17.261
LGA    A      48      A      48         16.715
LGA    D      49      D      49         18.417
LGA    E      50      E      50         16.586
LGA    L      51      L      51         14.505
LGA    K      52      K      52         16.002
LGA    A      53      A      53         13.258
LGA    R      54      R      54          8.571
LGA    D      55      D      55          3.026
LGA    G      56      G      56          5.185
LGA    D      57      D      57          3.963
LGA    Q      58      Q      58          3.376
LGA    R      59      R      59          5.944
LGA    T      60      T      60          3.538
LGA    A      61      A      61          2.179
LGA    L      62      L      62          3.821
LGA    L      63      L      63          2.461
LGA    S      64      S      64          1.922
LGA    L      65      L      65          2.600
LGA    F      66      F      66          2.310
LGA    E      67      E      67          3.539
LGA    Y      68      Y      68          2.960
LGA    P      69      P      69          3.690
LGA    N      70      N      70          3.529
LGA    M      71      M      71          3.333
LGA    Q      72      Q      72          1.821
LGA    V      73      V      73          4.039
LGA    R      74      R      74          3.908
LGA    L      75      L      75          1.712
LGA    Q      76      Q      76          2.893
LGA    A      77      A      77          3.946
LGA    A      78      A      78          2.158
LGA    K      79      K      79          1.976
LGA    L      80      L      80          3.990
LGA    T      81      T      81          3.327
LGA    L      82      L      82          1.357
LGA    A      83      A      83          6.065
LGA    V      84      V      84          8.046
LGA    A      85      A      85          6.591
LGA    P      86      P      86          5.647
LGA    V      87      V      87         12.866
LGA    K      88      K      88         15.375
LGA    A      89      A      89         13.331
LGA    R      90      R      90         14.707
LGA    E      91      E      91         21.296
LGA    Q      92      Q      92         23.279
LGA    L      93      L      93         22.910
LGA    E      94      E      94         25.961
LGA    A      95      A      95         31.711
LGA    I      96      I      96         32.869
LGA    V      97      V      97         33.148
LGA    S      98      S      98         37.877
LGA    S      99      S      99         42.244
LGA    K     100      K     100         45.346
LGA    W     101      W     101         45.414
LGA    F     102      F     102         42.606
LGA    P     103      P     103         43.873
LGA    Q     104      Q     104         43.360
LGA    A     105      A     105         40.798
LGA    G     106      G     106         41.883
LGA    D     107      D     107         36.048
LGA    A     108      A     108         29.164
LGA    G     109      G     109         27.219
LGA    M     110      M     110         24.365
LGA    C     111      C     111         18.716
LGA    L     112      L     112         19.756
LGA    D     113      D     113         21.967
LGA    L     114      L     114         17.933
LGA    L     115      L     115         13.946
LGA    D     116      D     116         15.429
LGA    D     117      D     117         18.275
LGA    G     118      G     118         18.802
LGA    T     119      T     119         25.810
LGA    F     120      F     120         28.120
LGA    K     121      K     121         29.294
LGA    P     122      P     122         32.463
LGA    K     123      K     123         32.002

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  123  121    4.0     25    3.00    22.107    18.878     0.806

LGA_LOCAL      RMSD =  3.002  Number of atoms =   25  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 24.335  Number of atoms =  121 
Std_ALL_ATOMS  RMSD = 16.905  (standard rmsd on all 121 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.592017 * X  +   0.581397 * Y  +   0.558116 * Z  + -20.577112
  Y_new =   0.706675 * X  +  -0.041549 * Y  +  -0.706317 * Z  +  58.857914
  Z_new =  -0.387461 * X  +   0.812559 * Y  +  -0.435456 * Z  +  -4.247442 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.062755   -1.078837  [ DEG:   118.1872    -61.8128 ]
  Theta =   0.397876    2.743716  [ DEG:    22.7966    157.2034 ]
  Phi   =   0.873457   -2.268136  [ DEG:    50.0454   -129.9546 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0382TS393_1                                  
REMARK     2: T0382.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0382TS393_1.T0382.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  123  121   4.0   25   3.00  18.878    16.91
REMARK  ---------------------------------------------------------- 
MOLECULE T0382TS393_1
PFRMAT TS
TARGET T0382
MODEL 1
PARENT N/A
ATOM      1  CA  MET     1     -38.481  66.136 -16.280  1.00 25.00           C
ATOM      2  CA  SER     2     -40.277  63.941 -18.831  1.00 25.00           C
ATOM      3  CA  LYS     3     -38.709  60.669 -17.686  1.00 25.00           C
ATOM      4  CA  LEU     4     -36.837  57.661 -16.468  1.00 25.00           C
ATOM      5  CA  ASP     5     -33.348  56.521 -15.544  1.00 25.00           C
ATOM      6  CA  LEU     6     -35.287  54.112 -13.284  1.00 25.00           C
ATOM      7  CA  HIS     7     -31.997  52.728 -11.895  1.00 25.00           C
ATOM      8  CA  GLN     8     -30.762  56.287 -11.209  1.00 25.00           C
ATOM      9  CA  MET     9     -34.041  57.105  -9.408  1.00 25.00           C
ATOM     10  CA  THR    10     -33.699  53.932  -7.291  1.00 25.00           C
ATOM     11  CA  THR    11     -30.099  54.886  -6.399  1.00 25.00           C
ATOM     12  CA  GLN    12     -31.251  58.398  -5.397  1.00 25.00           C
ATOM     13  CA  ASP    13     -34.012  56.894  -3.208  1.00 25.00           C
ATOM     14  CA  LEU    14     -31.460  54.575  -1.542  1.00 25.00           C
ATOM     15  CA  VAL    15     -29.147  57.554  -0.881  1.00 25.00           C
ATOM     16  CA  ALA    16     -32.063  59.508   0.651  1.00 25.00           C
ATOM     17  CA  LEU    17     -32.924  56.521   2.886  1.00 25.00           C
ATOM     18  CA  PHE    18     -29.271  56.274   4.007  1.00 25.00           C
ATOM     19  CA  ALA    19     -29.238  60.018   4.811  1.00 25.00           C
ATOM     20  CA  LYS    20     -32.464  59.635   6.840  1.00 25.00           C
ATOM     21  CA  VAL    21     -30.936  56.694   8.760  1.00 25.00           C
ATOM     22  CA  THR    22     -31.077  57.741  12.442  1.00 25.00           C
ATOM     23  CA  VAL    23     -29.761  58.727  15.892  1.00 25.00           C
ATOM     24  CA  GLU    24     -28.069  61.929  14.647  1.00 25.00           C
ATOM     25  CA  GLN    25     -24.659  60.187  14.728  1.00 25.00           C
ATOM     26  CA  ASP    26     -26.092  57.236  12.753  1.00 25.00           C
ATOM     27  CA  ASP    27     -27.561  59.648  10.165  1.00 25.00           C
ATOM     28  CA  ALA    28     -24.174  61.407   9.847  1.00 25.00           C
ATOM     29  CA  LEU    29     -22.439  58.029   9.353  1.00 25.00           C
ATOM     30  CA  LEU    30     -24.984  57.089   6.651  1.00 25.00           C
ATOM     31  CA  GLY    31     -24.393  60.439   4.892  1.00 25.00           C
ATOM     32  CA  ASN    32     -20.609  59.862   5.012  1.00 25.00           C
ATOM     33  CA  GLN    33     -21.071  56.358   3.538  1.00 25.00           C
ATOM     34  CA  ILE    34     -23.251  57.796   0.737  1.00 25.00           C
ATOM     35  CA  SER    35     -20.588  60.446  -0.007  1.00 25.00           C
ATOM     36  CA  ARG    36     -17.889  57.732  -0.140  1.00 25.00           C
ATOM     37  CA  PHE    37     -20.046  55.670  -2.541  1.00 25.00           C
ATOM     38  CA  ASN    38     -20.552  58.745  -4.766  1.00 25.00           C
ATOM     39  CA  ARG    39     -16.776  59.384  -4.784  1.00 25.00           C
ATOM     40  CA  LEU    40     -16.138  55.732  -5.745  1.00 25.00           C
ATOM     41  CA  PHE    41     -18.692  56.007  -8.585  1.00 25.00           C
ATOM     42  CA  GLY    42     -17.000  59.209  -9.830  1.00 25.00           C
ATOM     43  CA  VAL    43     -13.590  57.468  -9.749  1.00 25.00           C
ATOM     44  CA  MET    44     -15.023  54.516 -11.723  1.00 25.00           C
ATOM     45  CA  ALA    45     -16.492  56.928 -14.311  1.00 25.00           C
ATOM     46  CA  GLU    46     -13.105  58.688 -14.629  1.00 25.00           C
ATOM     47  CA  ILE    47     -11.370  55.310 -15.124  1.00 25.00           C
ATOM     48  CA  ALA    48     -13.916  54.369 -17.825  1.00 25.00           C
ATOM     49  CA  ASP    49     -13.324  57.719 -19.585  1.00 25.00           C
ATOM     50  CA  GLU    50      -9.540  57.142 -19.463  1.00 25.00           C
ATOM     51  CA  LEU    51     -10.002  53.638 -20.938  1.00 25.00           C
ATOM     52  CA  LYS    52     -12.183  55.077 -23.739  1.00 25.00           C
ATOM     53  CA  ALA    53     -15.349  53.417 -22.282  1.00 25.00           C
ATOM     54  CA  ARG    54     -16.870  50.882 -19.876  1.00 25.00           C
ATOM     55  CA  ASP    55     -16.433  50.061 -16.185  1.00 25.00           C
ATOM     56  CA  GLY    56     -15.675  46.851 -14.333  1.00 25.00           C
ATOM     57  CA  ASP    57     -15.695  47.609 -10.591  1.00 25.00           C
ATOM     58  CA  GLN    58     -16.581  50.394  -8.179  1.00 25.00           C
ATOM     59  CA  ARG    59     -20.367  50.968  -8.091  1.00 25.00           C
ATOM     60  CA  THR    60     -20.970  47.200  -8.432  1.00 25.00           C
ATOM     61  CA  ALA    61     -18.518  46.524  -5.569  1.00 25.00           C
ATOM     62  CA  LEU    62     -20.310  49.114  -3.390  1.00 25.00           C
ATOM     63  CA  LEU    63     -23.683  47.479  -4.177  1.00 25.00           C
ATOM     64  CA  SER    64     -22.263  44.045  -3.251  1.00 25.00           C
ATOM     65  CA  LEU    65     -20.927  45.461   0.047  1.00 25.00           C
ATOM     66  CA  PHE    66     -24.354  46.992   0.807  1.00 25.00           C
ATOM     67  CA  GLU    67     -26.043  43.633   0.077  1.00 25.00           C
ATOM     68  CA  TYR    68     -23.503  40.922   0.972  1.00 25.00           C
ATOM     69  CA  PRO    69     -23.978  41.343   4.771  1.00 25.00           C
ATOM     70  CA  ASN    70     -22.550  42.468   8.152  1.00 25.00           C
ATOM     71  CA  MET    71     -19.803  39.822   8.108  1.00 25.00           C
ATOM     72  CA  GLN    72     -17.646  42.085  10.321  1.00 25.00           C
ATOM     73  CA  VAL    73     -14.680  41.625   7.942  1.00 25.00           C
ATOM     74  CA  ARG    74     -16.908  42.508   4.955  1.00 25.00           C
ATOM     75  CA  LEU    75     -18.141  45.647   6.771  1.00 25.00           C
ATOM     76  CA  GLN    76     -14.525  46.659   7.527  1.00 25.00           C
ATOM     77  CA  ALA    77     -13.588  46.155   3.848  1.00 25.00           C
ATOM     78  CA  ALA    78     -16.570  48.303   2.769  1.00 25.00           C
ATOM     79  CA  LYS    79     -15.511  51.047   5.223  1.00 25.00           C
ATOM     80  CA  LEU    80     -11.938  50.931   3.849  1.00 25.00           C
ATOM     81  CA  THR    81     -13.278  51.214   0.272  1.00 25.00           C
ATOM     82  CA  LEU    82     -15.425  54.217   1.287  1.00 25.00           C
ATOM     83  CA  ALA    83     -12.381  55.878   2.911  1.00 25.00           C
ATOM     84  CA  VAL    84     -10.331  55.283  -0.268  1.00 25.00           C
ATOM     85  CA  ALA    85     -13.128  56.815  -2.389  1.00 25.00           C
ATOM     86  CA  PRO    86     -13.247  59.863  -0.073  1.00 25.00           C
ATOM     87  CA  VAL    87      -9.448  60.259  -0.357  1.00 25.00           C
ATOM     88  CA  LYS    88      -9.689  60.058  -4.174  1.00 25.00           C
ATOM     89  CA  ALA    89     -12.444  62.719  -4.165  1.00 25.00           C
ATOM     90  CA  ARG    90     -10.287  64.980  -1.951  1.00 25.00           C
ATOM     91  CA  GLU    91      -7.321  64.521  -4.331  1.00 25.00           C
ATOM     92  CA  GLN    92      -9.548  65.404  -7.318  1.00 25.00           C
ATOM     93  CA  LEU    93     -10.782  68.542  -5.502  1.00 25.00           C
ATOM     94  CA  GLU    94      -7.166  69.555  -4.746  1.00 25.00           C
ATOM     95  CA  ALA    95      -6.229  69.051  -8.425  1.00 25.00           C
ATOM     96  CA  ILE    96      -9.210  71.199  -9.503  1.00 25.00           C
ATOM     97  CA  VAL    97      -8.152  73.942  -7.051  1.00 25.00           C
ATOM     98  CA  SER    98      -4.579  73.827  -8.425  1.00 25.00           C
ATOM     99  CA  SER    99      -5.919  74.109 -12.001  1.00 25.00           C
ATOM    100  CA  LYS   100      -8.012  75.949 -14.647  1.00 25.00           C
ATOM    101  CA  TRP   101      -9.234  73.027 -16.755  1.00 25.00           C
ATOM    102  CA  PHE   102     -11.854  70.770 -15.154  1.00 25.00           C
ATOM    103  CA  PRO   103     -14.429  73.171 -16.518  1.00 25.00           C
ATOM    104  CA  GLN   104     -16.859  75.638 -17.990  1.00 25.00           C
ATOM    105  CA  ALA   105     -19.893  73.452 -17.374  1.00 25.00           C
ATOM    106  CA  GLY   106     -23.207  71.870 -18.232  1.00 25.00           C
ATOM    107  CA  ASP   107     -22.779  70.120 -14.837  1.00 25.00           C
ATOM    108  CA  ALA   108     -21.342  68.203 -11.838  1.00 25.00           C
ATOM    109  CA  GLY   109     -20.393  64.778 -10.481  1.00 25.00           C
ATOM    110  CA  MET   110     -21.119  62.308  -7.647  1.00 25.00           C
ATOM    111  CA  CYS   111     -18.577  64.092  -5.406  1.00 25.00           C
ATOM    112  CA  LEU   112     -20.203  67.466  -6.207  1.00 25.00           C
ATOM    113  CA  ASP   113     -23.651  66.033  -5.356  1.00 25.00           C
ATOM    114  CA  LEU   114     -22.298  64.681  -2.038  1.00 25.00           C
ATOM    115  CA  LEU   115     -20.789  68.107  -1.228  1.00 25.00           C
ATOM    116  CA  ASP   116     -22.502  71.479  -0.617  1.00 25.00           C
ATOM    117  CA  ASP   117     -21.953  75.089   0.474  1.00 25.00           C
ATOM    118  CA  GLY   118     -22.792  78.183   2.471  1.00 25.00           C
ATOM    119  CA  THR   119     -25.707  80.311   1.119  1.00 25.00           C
ATOM    120  CA  PHE   120     -28.894  78.263   0.866  1.00 25.00           C
ATOM    121  CA  LYS   121     -30.281  80.824  -1.587  1.00 25.00           C
ATOM    122  CA  PRO   122     -33.802  79.628  -2.605  1.00 25.00           C
ATOM    123  CA  LYS   123     -34.828  76.061  -1.851  1.00 25.00           C
TER
END
