
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  123 (  123),  selected  121 , name T0382TS393_2
# Molecule2: number of CA atoms  121 (  929),  selected  121 , name T0382.pdb
# PARAMETERS: T0382TS393_2.T0382.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    33        54 - 86          4.93    17.27
  LONGEST_CONTINUOUS_SEGMENT:    33        55 - 87          4.93    17.37
  LCS_AVERAGE:     21.98

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    22        32 - 53          1.94    26.88
  LCS_AVERAGE:     11.39

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20        33 - 52          0.34    26.65
  LCS_AVERAGE:      8.74

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  121
LCS_GDT     K       3     K       3      3    7   17     3    3    3    5    7   10   11   13   13   14   17   21   24   30   35   40   45   51   54   59 
LCS_GDT     L       4     L       4      4    7   17     4    4    5    6    7   10   11   13   13   14   18   25   29   32   41   45   51   52   56   59 
LCS_GDT     D       5     D       5      4    7   24     4    4    5    6   10   14   19   21   22   25   31   36   40   46   49   51   54   57   57   59 
LCS_GDT     L       6     L       6      4    7   24     4    4    5    6    7   10   11   13   22   28   32   39   43   47   50   53   54   57   57   59 
LCS_GDT     H       7     H       7      4    7   24     4    4    7    9   14   15   17   21   27   32   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     Q       8     Q       8      4    7   24     4    4    5    6   14   15   17   21   27   32   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     M       9     M       9      4   13   24     4    4    4   10   11   15   18   22   27   32   35   39   43   47   50   53   54   57   57   58 
LCS_GDT     T      10     T      10     12   13   24    12   12   12   12   12   15   19   22   27   31   35   39   41   47   50   53   54   57   57   58 
LCS_GDT     T      11     T      11     12   13   24    12   12   12   12   12   13   19   22   27   32   35   39   43   47   50   53   54   57   57   58 
LCS_GDT     Q      12     Q      12     12   13   24    12   12   12   12   12   13   13   22   27   31   35   39   43   47   50   53   54   57   57   58 
LCS_GDT     D      13     D      13     12   13   24    12   12   12   12   12   13   16   22   27   31   35   39   43   47   50   53   54   57   57   58 
LCS_GDT     L      14     L      14     12   13   24    12   12   12   12   12   13   17   22   27   32   35   39   43   47   50   53   54   57   57   58 
LCS_GDT     V      15     V      15     12   13   24    12   12   12   12   12   13   16   22   27   31   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     A      16     A      16     12   13   24    12   12   12   12   12   13   13   16   26   31   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     L      17     L      17     12   13   24    12   12   12   12   12   13   16   22   27   32   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     F      18     F      18     12   13   24    12   12   12   12   12   13   14   22   27   32   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     A      19     A      19     12   13   24    12   12   12   12   12   13   13   16   19   22   32   39   43   47   50   53   54   57   57   59 
LCS_GDT     K      20     K      20     12   13   24    12   12   12   12   12   13   13   16   27   31   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     V      21     V      21     12   13   24    12   12   12   12   12   13   14   20   27   32   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     T      22     T      22      3   13   24     3    3    3    5    5   13   13   15   17   19   23   28   31   38   44   53   54   57   57   58 
LCS_GDT     V      23     V      23     10   10   24    10   10   10   10   10   10   11   13   17   20   23   29   33   47   48   53   54   57   57   58 
LCS_GDT     E      24     E      24     10   10   24    10   10   10   10   10   13   17   22   27   32   35   39   43   47   50   53   54   57   57   58 
LCS_GDT     Q      25     Q      25     10   10   24    10   10   10   10   10   12   15   22   27   31   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     D      26     D      26     10   10   24    10   10   10   10   10   10   11   15   22   24   31   37   43   47   50   53   54   57   57   59 
LCS_GDT     D      27     D      27     10   10   28    10   10   10   10   12   15   19   21   23   28   34   39   43   47   50   53   54   57   57   59 
LCS_GDT     A      28     A      28     10   10   28    10   10   10   10   10   10   10   17   22   26   33   38   43   47   50   53   54   57   57   59 
LCS_GDT     L      29     L      29     10   10   28    10   10   10   10   10   10   13   15   22   24   27   33   37   45   48   50   54   57   57   59 
LCS_GDT     L      30     L      30     10   10   28    10   10   10   10   10   11   15   19   23   24   24   24   29   32   35   41   45   49   54   59 
LCS_GDT     G      31     G      31     10   10   28    10   10   10   10   10   10   10   11   19   24   24   24   25   32   35   38   45   48   54   59 
LCS_GDT     N      32     N      32     10   22   28    10   10   10   10   10   10   14   22   23   24   24   24   29   32   35   41   45   48   54   59 
LCS_GDT     Q      33     Q      33     20   22   28    12   20   20   20   20   20   20   22   23   24   24   24   29   32   35   41   45   48   54   59 
LCS_GDT     I      34     I      34     20   22   28    19   20   20   20   20   20   20   22   23   24   24   24   25   26   26   27   29   30   38   44 
LCS_GDT     S      35     S      35     20   22   28    19   20   20   20   20   20   20   22   23   24   24   24   25   26   26   27   30   33   39   49 
LCS_GDT     R      36     R      36     20   22   28    19   20   20   20   20   20   20   22   23   24   24   24   29   32   35   41   45   48   54   59 
LCS_GDT     F      37     F      37     20   22   28    19   20   20   20   20   20   20   22   23   24   24   24   29   32   35   41   45   48   54   59 
LCS_GDT     N      38     N      38     20   22   28    19   20   20   20   20   20   20   22   23   24   24   24   25   26   26   27   35   44   50   55 
LCS_GDT     R      39     R      39     20   22   28    19   20   20   20   20   20   20   22   23   24   24   24   25   32   35   41   45   48   53   59 
LCS_GDT     L      40     L      40     20   22   28    19   20   20   20   20   20   20   22   23   24   24   24   29   32   35   41   45   48   54   59 
LCS_GDT     F      41     F      41     20   22   28    19   20   20   20   20   20   20   22   23   24   24   24   29   32   35   41   45   48   54   59 
LCS_GDT     G      42     G      42     20   22   28    19   20   20   20   20   20   20   22   23   24   24   24   29   32   35   41   45   48   54   59 
LCS_GDT     V      43     V      43     20   22   28    19   20   20   20   20   20   20   22   23   24   24   24   29   32   35   41   45   49   54   59 
LCS_GDT     M      44     M      44     20   22   28    19   20   20   20   20   20   20   22   23   24   25   28   29   32   35   41   45   48   54   59 
LCS_GDT     A      45     A      45     20   22   28    19   20   20   20   20   20   20   22   23   24   25   28   29   32   35   41   45   48   54   59 
LCS_GDT     E      46     E      46     20   22   28    19   20   20   20   20   20   20   22   23   24   24   24   29   32   35   41   45   49   54   59 
LCS_GDT     I      47     I      47     20   22   28    19   20   20   20   20   20   20   22   23   24   24   24   25   27   31   37   41   48   54   59 
LCS_GDT     A      48     A      48     20   22   28    19   20   20   20   20   20   20   22   23   24   24   24   25   27   30   37   41   48   54   59 
LCS_GDT     D      49     D      49     20   22   28    19   20   20   20   20   20   20   22   23   24   24   24   29   32   35   41   45   49   54   59 
LCS_GDT     E      50     E      50     20   22   28    19   20   20   20   20   20   20   22   23   24   24   24   25   27   29   36   41   48   54   59 
LCS_GDT     L      51     L      51     20   22   28    19   20   20   20   20   20   20   22   23   24   24   24   25   26   26   27   28   30   32   39 
LCS_GDT     K      52     K      52     20   22   28    19   20   20   20   20   20   20   22   23   24   24   24   25   26   26   32   40   48   54   59 
LCS_GDT     A      53     A      53      3   22   31     3    3    4    5    5   10   15   22   23   24   24   27   29   33   38   43   49   52   54   59 
LCS_GDT     R      54     R      54      3    5   33     3    3    4    7    9   11   13   15   19   22   27   29   36   40   46   50   53   54   57   59 
LCS_GDT     D      55     D      55      3    5   33     3    3    4    7    9   14   19   21   22   26   30   35   40   46   49   51   54   57   57   59 
LCS_GDT     G      56     G      56      3   12   33     3    3    6    9   10   14   19   21   22   27   33   39   43   47   50   51   54   57   57   59 
LCS_GDT     D      57     D      57      6   12   33     3    4    7    8   10   13   19   21   22   27   33   39   43   47   50   53   54   57   57   59 
LCS_GDT     Q      58     Q      58      6   12   33     3    4   16   16   18   18   20   21   27   32   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     R      59     R      59      6   12   33     3    5    8    9   10   12   20   21   22   26   33   37   43   47   50   53   54   57   57   59 
LCS_GDT     T      60     T      60      6   12   33     4    5    8    9   10   13   19   21   24   28   33   39   43   47   50   53   54   57   57   59 
LCS_GDT     A      61     A      61      6   12   33     4    5    8   10   14   15   19   22   27   32   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     L      62     L      62      6   12   33     4    5    8   10   14   15   19   21   27   32   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     L      63     L      63      6   12   33     4    5    8   10   14   15   19   21   27   32   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     S      64     S      64      6   12   33     4    5    8   10   14   15   19   22   27   32   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     L      65     L      65      6   12   33     4    5    8   10   14   15   19   22   27   32   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     F      66     F      66      6   12   33     4    5    8   10   14   15   19   22   27   32   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     E      67     E      67      4   12   33     3    3    6    9   14   15   19   22   27   32   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     Y      68     Y      68      3    5   33     3    3    5    5    6   12   14   19   24   32   35   37   41   46   50   53   54   57   57   59 
LCS_GDT     P      69     P      69      3    5   33     1    3    4    7    9   12   16   20   25   32   35   37   41   46   50   53   54   57   57   59 
LCS_GDT     N      70     N      70      3   14   33     3    4    5    7   11   14   17   21   27   32   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     M      71     M      71     13   16   33    10   12   12   14   15   15   19   22   27   32   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     Q      72     Q      72     13   16   33    10   12   12   14   15   15   17   21   25   32   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     V      73     V      73     13   16   33    10   12   12   14   15   15   16   17   24   28   33   37   41   46   50   53   54   57   57   59 
LCS_GDT     R      74     R      74     13   16   33    10   12   12   14   15   15   17   21   27   32   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     L      75     L      75     13   16   33    10   12   12   14   15   15   19   22   27   32   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     Q      76     Q      76     13   16   33    10   12   12   14   15   15   17   21   25   32   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     A      77     A      77     13   16   33    10   12   12   14   15   15   17   20   25   31   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     A      78     A      78     13   16   33    10   12   12   14   15   15   19   22   27   32   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     K      79     K      79     13   16   33    10   12   12   14   15   15   19   22   27   32   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     L      80     L      80     13   16   33    10   12   12   14   15   15   17   21   25   32   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     T      81     T      81     13   16   33     8   12   12   14   15   15   17   22   27   32   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     L      82     L      82     13   16   33     7   12   12   14   15   15   19   22   27   32   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     A      83     A      83     13   16   33     4    5    8   14   15   17   19   21   27   32   35   39   43   47   50   53   54   57   57   59 
LCS_GDT     V      84     V      84      5   18   33     4    5   11   14   15   15   18   21   24   29   33   37   41   42   48   53   54   57   57   58 
LCS_GDT     A      85     A      85     16   18   33     5   15   16   16   18   18   20   21   24   29   33   37   41   44   48   53   54   57   57   59 
LCS_GDT     P      86     P      86     16   18   33    14   15   16   16   18   18   20   21   25   32   35   39   43   46   50   53   54   57   57   59 
LCS_GDT     V      87     V      87     16   18   33    14   15   16   16   18   18   20   21   22   24   30   34   37   38   45   51   52   52   56   59 
LCS_GDT     K      88     K      88     16   18   29    14   15   16   16   18   18   20   21   22   24   25   28   29   32   34   35   40   43   47   53 
LCS_GDT     A      89     A      89     16   18   29    14   15   16   16   18   18   20   21   22   24   25   28   29   32   34   37   41   48   54   59 
LCS_GDT     R      90     R      90     16   18   28    14   15   16   16   18   18   20   21   22   24   25   28   29   32   34   37   41   48   54   59 
LCS_GDT     E      91     E      91     16   18   28    14   15   16   16   18   18   20   21   22   24   25   28   29   32   34   35   37   40   42   47 
LCS_GDT     Q      92     Q      92     16   18   28    14   15   16   16   18   18   20   21   22   24   25   28   29   32   34   35   37   40   42   45 
LCS_GDT     L      93     L      93     16   18   28    14   15   16   16   18   18   20   21   22   24   25   28   29   32   34   35   37   40   42   45 
LCS_GDT     E      94     E      94     16   18   28    14   15   16   16   18   18   20   21   22   24   25   28   29   32   34   35   37   40   42   45 
LCS_GDT     A      95     A      95     16   18   28    14   15   16   16   18   18   20   21   22   24   25   28   29   32   34   35   37   40   42   45 
LCS_GDT     I      96     I      96     16   18   28    14   15   16   16   18   18   20   21   22   24   25   28   29   32   34   35   37   40   42   45 
LCS_GDT     V      97     V      97     16   18   28    14   15   16   16   18   18   20   21   22   24   25   28   29   32   34   35   37   40   42   45 
LCS_GDT     S      98     S      98     16   18   28    14   15   16   16   18   18   20   21   22   24   25   28   29   32   34   35   37   40   42   45 
LCS_GDT     S      99     S      99     16   18   28    14   15   16   16   18   18   20   21   22   24   25   28   29   32   34   35   37   40   42   45 
LCS_GDT     K     100     K     100     16   18   28     4   11   16   16   18   18   20   21   22   24   25   28   29   32   34   35   37   40   42   45 
LCS_GDT     W     101     W     101      3   18   28     3    4   11   14   18   18   20   21   22   24   25   28   29   32   34   35   37   40   42   45 
LCS_GDT     F     102     F     102      3   18   28     3    3    4    5    9   13   18   19   22   24   24   28   29   32   34   35   37   40   42   45 
LCS_GDT     P     103     P     103      3   13   28     3    3    4   10   14   17   20   21   22   24   24   25   27   32   34   35   37   40   42   45 
LCS_GDT     Q     104     Q     104      0    3   28     0    1    3    3    3    4    4   10   14   24   24   25   25   28   31   35   37   39   42   45 
LCS_GDT     A     105     A     105      0    4   28     0    0    5    5    5    5    7   13   15   17   17   19   22   25   31   35   37   40   42   45 
LCS_GDT     G     106     G     106      3    4   28     0    3    5    5    5    6    9   13   15   17   17   19   26   31   33   35   37   40   42   45 
LCS_GDT     D     107     D     107      3    4   28     0    3    5    5    5    5    7   13   15   17   17   19   23   28   31   35   37   40   42   45 
LCS_GDT     A     108     A     108      3    9   28     0    3    4    4    8    9    9    9   12   14   15   19   22   22   24   31   35   39   42   45 
LCS_GDT     G     109     G     109      7    9   14     7    7    7    7    8    9   10   11   13   15   18   20   21   23   23   24   34   40   42   45 
LCS_GDT     M     110     M     110      7    9   14     7    7    7    7    8    9    9   13   16   17   17   20   21   23   23   26   34   40   42   45 
LCS_GDT     C     111     C     111      7    9   14     7    7    7    7    8    9    9   12   13   15   16   20   26   32   34   35   37   40   44   56 
LCS_GDT     L     112     L     112      7    9   14     7    7    7    7    8    9   10   12   13   16   18   20   26   32   34   35   39   43   48   56 
LCS_GDT     D     113     D     113      7    9   14     7    7    7    7    8    9   10   11   12   14   16   18   21   23   26   29   34   40   48   56 
LCS_GDT     L     114     L     114      7    9   14     7    7    7    7    8    9    9   10   12   14   15   17   21   22   25   29   34   38   42   45 
LCS_GDT     L     115     L     115      7    9   14     7    7    7    7    8    9   10   11   13   17   17   20   21   26   34   36   43   45   49   53 
LCS_GDT     D     116     D     116      3    9   14     0    3    3    5    7    9   10   11   13   15   15   18   19   20   23   27   29   33   47   52 
LCS_GDT     D     117     D     117      3    4   14     0    2    3    5    6    7    7    9   13   15   15   18   19   20   23   27   29   33   47   52 
LCS_GDT     G     118     G     118      3    4   14     0    0    3    5    6    7   10   11   13   15   16   19   28   33   36   38   42   45   48   57 
LCS_GDT     T     119     T     119      3    5   13     0    3    4    5    6    7    7   11   13   21   24   27   30   37   43   44   49   50   54   59 
LCS_GDT     F     120     F     120      3    5    8     3    3    4    4    5    5    6    8    8   13   17   27   28   37   43   44   49   50   54   59 
LCS_GDT     K     121     K     121      3    5    8     3    3    4    4    5    5    6   13   13   14   15   15   16   18   18   19   28   37   37   45 
LCS_GDT     P     122     P     122      3    5    8     3    3    4    4    6   10   11   13   13   14   15   15   16   18   18   19   22   23   24   26 
LCS_GDT     K     123     K     123      3    5    8     2    3    3    4    6   10   11   13   13   14   15   15   16   18   18   19   22   24   26   38 
LCS_AVERAGE  LCS_A:  14.04  (   8.74   11.39   21.98 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     19     20     20     20     20     20     20     22     27     32     35     39     43     47     50     53     54     57     57     59 
GDT PERCENT_CA  15.70  16.53  16.53  16.53  16.53  16.53  16.53  18.18  22.31  26.45  28.93  32.23  35.54  38.84  41.32  43.80  44.63  47.11  47.11  48.76
GDT RMS_LOCAL    0.26   0.34   0.34   0.34   0.34   0.34   0.34   1.94   3.13   3.72   3.72   4.04   4.46   4.74   4.95   5.18   5.27   5.62   5.62   7.05
GDT RMS_ALL_CA  26.62  26.65  26.65  26.65  26.65  26.65  26.65  26.88  18.71  18.03  18.66  18.38  18.08  18.27  17.82  18.15  18.07  17.85  17.85  16.94

#      Molecule1      Molecule2       DISTANCE
LGA    K       3      K       3         27.924
LGA    L       4      L       4         25.292
LGA    D       5      D       5         23.234
LGA    L       6      L       6         19.904
LGA    H       7      H       7         20.443
LGA    Q       8      Q       8         23.628
LGA    M       9      M       9         22.849
LGA    T      10      T      10         22.310
LGA    T      11      T      11         21.028
LGA    Q      12      Q      12         22.176
LGA    D      13      D      13         22.549
LGA    L      14      L      14         21.055
LGA    V      15      V      15         20.961
LGA    A      16      A      16         22.334
LGA    L      17      L      17         21.809
LGA    F      18      F      18         20.730
LGA    A      19      A      19         21.265
LGA    K      20      K      20         22.258
LGA    V      21      V      21         21.134
LGA    T      22      T      22         23.011
LGA    V      23      V      23         24.506
LGA    E      24      E      24         22.070
LGA    Q      25      Q      25         19.112
LGA    D      26      D      26         15.614
LGA    D      27      D      27         13.842
LGA    A      28      A      28         10.774
LGA    L      29      L      29          8.285
LGA    L      30      L      30          4.972
LGA    G      31      G      31          6.607
LGA    N      32      N      32          3.860
LGA    Q      33      Q      33          2.937
LGA    I      34      I      34          3.769
LGA    S      35      S      35          3.413
LGA    R      36      R      36          2.388
LGA    F      37      F      37          2.856
LGA    N      38      N      38          2.902
LGA    R      39      R      39          1.983
LGA    L      40      L      40          1.741
LGA    F      41      F      41          2.257
LGA    G      42      G      42          1.393
LGA    V      43      V      43          0.536
LGA    M      44      M      44          1.626
LGA    A      45      A      45          1.295
LGA    E      46      E      46          0.740
LGA    I      47      I      47          1.931
LGA    A      48      A      48          2.421
LGA    D      49      D      49          1.991
LGA    E      50      E      50          2.647
LGA    L      51      L      51          3.414
LGA    K      52      K      52          3.630
LGA    A      53      A      53          3.899
LGA    R      54      R      54          9.997
LGA    D      55      D      55         15.566
LGA    G      56      G      56         17.705
LGA    D      57      D      57         15.024
LGA    Q      58      Q      58         17.402
LGA    R      59      R      59         16.736
LGA    T      60      T      60         20.198
LGA    A      61      A      61         21.522
LGA    L      62      L      62         20.989
LGA    L      63      L      63         24.642
LGA    S      64      S      64         26.194
LGA    L      65      L      65         24.188
LGA    F      66      F      66         27.383
LGA    E      67      E      67         29.933
LGA    Y      68      Y      68         32.207
LGA    P      69      P      69         32.207
LGA    N      70      N      70         27.650
LGA    M      71      M      71         25.612
LGA    Q      72      Q      72         25.410
LGA    V      73      V      73         27.253
LGA    R      74      R      74         25.898
LGA    L      75      L      75         23.638
LGA    Q      76      Q      76         24.505
LGA    A      77      A      77         25.720
LGA    A      78      A      78         24.230
LGA    K      79      K      79         23.374
LGA    L      80      L      80         24.767
LGA    T      81      T      81         25.263
LGA    L      82      L      82         24.680
LGA    A      83      A      83         27.864
LGA    V      84      V      84         29.693
LGA    A      85      A      85         28.181
LGA    P      86      P      86         29.629
LGA    V      87      V      87         36.146
LGA    K      88      K      88         32.852
LGA    A      89      A      89         27.928
LGA    R      90      R      90         33.680
LGA    E      91      E      91         37.887
LGA    Q      92      Q      92         32.976
LGA    L      93      L      93         33.489
LGA    E      94      E      94         40.891
LGA    A      95      A      95         41.186
LGA    I      96      I      96         38.132
LGA    V      97      V      97         43.252
LGA    S      98      S      98         48.735
LGA    S      99      S      99         46.788
LGA    K     100      K     100         47.867
LGA    W     101      W     101         44.135
LGA    F     102      F     102         41.587
LGA    P     103      P     103         39.795
LGA    Q     104      Q     104         37.398
LGA    A     105      A     105         37.725
LGA    G     106      G     106         34.626
LGA    D     107      D     107         28.242
LGA    A     108      A     108         26.895
LGA    G     109      G     109         25.736
LGA    M     110      M     110         19.286
LGA    C     111      C     111         17.825
LGA    L     112      L     112         24.971
LGA    D     113      D     113         25.474
LGA    L     114      L     114         20.954
LGA    L     115      L     115         24.380
LGA    D     116      D     116         30.720
LGA    D     117      D     117         34.150
LGA    G     118      G     118         36.234
LGA    T     119      T     119         38.694
LGA    F     120      F     120         38.902
LGA    K     121      K     121         41.470
LGA    P     122      P     122         38.528
LGA    K     123      K     123         34.500

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  123  121    4.0     22    1.94    23.760    20.051     1.077

LGA_LOCAL      RMSD =  1.943  Number of atoms =   22  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 25.564  Number of atoms =  121 
Std_ALL_ATOMS  RMSD = 13.893  (standard rmsd on all 121 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.262301 * X  +  -0.847759 * Y  +   0.460981 * Z  +  -4.090430
  Y_new =   0.341794 * X  +   0.365119 * Y  +   0.865948 * Z  +  39.476044
  Z_new =  -0.902428 * X  +   0.384699 * Y  +   0.193988 * Z  +   4.043833 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.103748   -2.037845  [ DEG:    63.2401   -116.7599 ]
  Theta =   1.125371    2.016222  [ DEG:    64.4790    115.5210 ]
  Phi   =   2.225356   -0.916237  [ DEG:   127.5035    -52.4965 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0382TS393_2                                  
REMARK     2: T0382.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0382TS393_2.T0382.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  123  121   4.0   22   1.94  20.051    13.89
REMARK  ---------------------------------------------------------- 
MOLECULE T0382TS393_2
PFRMAT TS
TARGET T0382
MODEL 2
PARENT N/A
ATOM      1  CA  MET     1     -26.264  27.795   1.823  1.00 25.00           C
ATOM      2  CA  SER     2     -27.387  31.416   2.411  1.00 25.00           C
ATOM      3  CA  LYS     3     -26.601  34.924   1.357  1.00 25.00           C
ATOM      4  CA  LEU     4     -25.606  38.426   2.394  1.00 25.00           C
ATOM      5  CA  ASP     5     -21.984  39.604   2.805  1.00 25.00           C
ATOM      6  CA  LEU     6     -20.816  36.101   3.821  1.00 25.00           C
ATOM      7  CA  HIS     7     -17.178  37.299   3.861  1.00 25.00           C
ATOM      8  CA  GLN     8     -18.161  40.292   6.039  1.00 25.00           C
ATOM      9  CA  MET     9     -20.009  37.960   8.451  1.00 25.00           C
ATOM     10  CA  THR    10     -16.936  35.683   8.642  1.00 25.00           C
ATOM     11  CA  THR    11     -14.707  38.711   9.372  1.00 25.00           C
ATOM     12  CA  GLN    12     -17.106  39.842  12.134  1.00 25.00           C
ATOM     13  CA  ASP    13     -17.053  36.327  13.653  1.00 25.00           C
ATOM     14  CA  LEU    14     -13.224  36.323  13.571  1.00 25.00           C
ATOM     15  CA  VAL    15     -13.158  39.745  15.288  1.00 25.00           C
ATOM     16  CA  ALA    16     -15.561  38.467  17.983  1.00 25.00           C
ATOM     17  CA  LEU    17     -13.344  35.394  18.537  1.00 25.00           C
ATOM     18  CA  PHE    18     -10.262  37.645  18.858  1.00 25.00           C
ATOM     19  CA  ALA    19     -12.102  39.842  21.400  1.00 25.00           C
ATOM     20  CA  LYS    20     -13.096  36.734  23.404  1.00 25.00           C
ATOM     21  CA  VAL    21      -9.462  35.523  23.374  1.00 25.00           C
ATOM     22  CA  THR    22      -8.288  33.840  26.598  1.00 25.00           C
ATOM     23  CA  VAL    23      -6.473  31.016  28.506  1.00 25.00           C
ATOM     24  CA  GLU    24      -3.143  30.998  26.616  1.00 25.00           C
ATOM     25  CA  GLN    25      -4.547  28.457  24.117  1.00 25.00           C
ATOM     26  CA  ASP    26      -7.652  30.639  23.607  1.00 25.00           C
ATOM     27  CA  ASP    27      -5.432  33.704  23.014  1.00 25.00           C
ATOM     28  CA  ALA    28      -3.361  31.738  20.462  1.00 25.00           C
ATOM     29  CA  LEU    29      -6.562  30.639  18.672  1.00 25.00           C
ATOM     30  CA  LEU    30      -7.785  34.268  18.577  1.00 25.00           C
ATOM     31  CA  GLY    31      -4.420  35.388  17.131  1.00 25.00           C
ATOM     32  CA  ASN    32      -4.629  32.652  14.459  1.00 25.00           C
ATOM     33  CA  GLN    33      -8.183  33.763  13.564  1.00 25.00           C
ATOM     34  CA  ILE    34      -7.002  37.395  13.277  1.00 25.00           C
ATOM     35  CA  SER    35      -4.121  36.305  11.003  1.00 25.00           C
ATOM     36  CA  ARG    36      -6.564  34.333   8.811  1.00 25.00           C
ATOM     37  CA  PHE    37      -8.860  37.391   8.577  1.00 25.00           C
ATOM     38  CA  ASN    38      -5.881  39.581   7.582  1.00 25.00           C
ATOM     39  CA  ARG    39      -4.882  37.045   4.892  1.00 25.00           C
ATOM     40  CA  LEU    40      -8.470  37.016   3.553  1.00 25.00           C
ATOM     41  CA  PHE    41      -8.484  40.844   3.439  1.00 25.00           C
ATOM     42  CA  GLY    42      -5.154  40.825   1.548  1.00 25.00           C
ATOM     43  CA  VAL    43      -6.558  38.285  -0.950  1.00 25.00           C
ATOM     44  CA  MET    44      -9.663  40.468  -1.461  1.00 25.00           C
ATOM     45  CA  ALA    45      -7.443  43.531  -2.054  1.00 25.00           C
ATOM     46  CA  GLU    46      -5.372  41.567  -4.605  1.00 25.00           C
ATOM     47  CA  ILE    47      -8.574  40.467  -6.395  1.00 25.00           C
ATOM     48  CA  ALA    48      -9.796  44.096  -6.490  1.00 25.00           C
ATOM     49  CA  ASP    49      -6.431  45.216  -7.936  1.00 25.00           C
ATOM     50  CA  GLU    50      -6.640  42.480 -10.608  1.00 25.00           C
ATOM     51  CA  LEU    51     -10.194  43.591 -11.504  1.00 25.00           C
ATOM     52  CA  LYS    52      -9.013  47.223 -11.790  1.00 25.00           C
ATOM     53  CA  ALA    53      -9.568  49.171  -8.560  1.00 25.00           C
ATOM     54  CA  ARG    54      -8.745  51.143  -5.411  1.00 25.00           C
ATOM     55  CA  ASP    55      -6.878  52.961  -2.669  1.00 25.00           C
ATOM     56  CA  GLY    56      -7.092  52.453   1.109  1.00 25.00           C
ATOM     57  CA  ASP    57      -7.934  49.044   2.535  1.00 25.00           C
ATOM     58  CA  GLN    58      -5.710  46.251   3.896  1.00 25.00           C
ATOM     59  CA  ARG    59      -2.987  48.760   4.870  1.00 25.00           C
ATOM     60  CA  THR    60      -5.113  49.959   7.822  1.00 25.00           C
ATOM     61  CA  ALA    61      -5.636  46.337   8.949  1.00 25.00           C
ATOM     62  CA  LEU    62      -1.866  45.699   8.733  1.00 25.00           C
ATOM     63  CA  LEU    63      -1.191  48.847  10.807  1.00 25.00           C
ATOM     64  CA  SER    64      -3.734  47.695  13.429  1.00 25.00           C
ATOM     65  CA  LEU    65      -2.064  44.251  13.571  1.00 25.00           C
ATOM     66  CA  PHE    66       1.361  45.902  14.026  1.00 25.00           C
ATOM     67  CA  GLU    67      -0.037  48.076  16.853  1.00 25.00           C
ATOM     68  CA  TYR    68       3.303  49.699  17.878  1.00 25.00           C
ATOM     69  CA  PRO    69       4.332  46.116  18.795  1.00 25.00           C
ATOM     70  CA  ASN    70       3.274  43.012  20.742  1.00 25.00           C
ATOM     71  CA  MET    71       2.798  39.273  21.492  1.00 25.00           C
ATOM     72  CA  GLN    72       6.267  38.908  19.908  1.00 25.00           C
ATOM     73  CA  VAL    73       5.281  35.495  18.476  1.00 25.00           C
ATOM     74  CA  ARG    74       2.065  37.000  17.038  1.00 25.00           C
ATOM     75  CA  LEU    75       4.079  39.844  15.449  1.00 25.00           C
ATOM     76  CA  GLN    76       6.505  37.306  13.921  1.00 25.00           C
ATOM     77  CA  ALA    77       3.561  35.298  12.520  1.00 25.00           C
ATOM     78  CA  ALA    78       2.067  38.487  11.016  1.00 25.00           C
ATOM     79  CA  LYS    79       5.442  39.342   9.418  1.00 25.00           C
ATOM     80  CA  LEU    80       5.673  35.810   7.958  1.00 25.00           C
ATOM     81  CA  THR    81       2.130  36.136   6.544  1.00 25.00           C
ATOM     82  CA  LEU    82       3.039  39.510   4.976  1.00 25.00           C
ATOM     83  CA  ALA    83       6.178  37.966   3.415  1.00 25.00           C
ATOM     84  CA  VAL    84       4.089  35.083   2.005  1.00 25.00           C
ATOM     85  CA  ALA    85       1.586  37.583   0.537  1.00 25.00           C
ATOM     86  CA  PRO    86       4.456  39.552  -1.063  1.00 25.00           C
ATOM     87  CA  VAL    87       5.872  36.324  -2.558  1.00 25.00           C
ATOM     88  CA  LYS    88       2.422  35.429  -3.959  1.00 25.00           C
ATOM     89  CA  ALA    89       2.114  38.924  -5.497  1.00 25.00           C
ATOM     90  CA  ARG    90       5.582  38.558  -7.081  1.00 25.00           C
ATOM     91  CA  GLU    91       4.595  35.145  -8.513  1.00 25.00           C
ATOM     92  CA  GLN    92       1.381  36.650  -9.951  1.00 25.00           C
ATOM     93  CA  LEU    93       3.394  39.494 -11.540  1.00 25.00           C
ATOM     94  CA  GLU    94       5.820  36.956 -13.069  1.00 25.00           C
ATOM     95  CA  ALA    95       2.875  34.948 -14.468  1.00 25.00           C
ATOM     96  CA  ILE    96       1.383  38.138 -15.973  1.00 25.00           C
ATOM     97  CA  VAL    97       4.757  38.992 -17.570  1.00 25.00           C
ATOM     98  CA  SER    98       4.988  35.460 -19.031  1.00 25.00           C
ATOM     99  CA  SER    99       1.444  35.787 -20.445  1.00 25.00           C
ATOM    100  CA  LYS   100       1.479  39.356 -21.760  1.00 25.00           C
ATOM    101  CA  TRP   101       2.172  42.745 -20.158  1.00 25.00           C
ATOM    102  CA  PHE   102       4.066  44.309 -17.290  1.00 25.00           C
ATOM    103  CA  PRO   103       6.146  47.395 -16.729  1.00 25.00           C
ATOM    104  CA  GLN   104       7.828  50.251 -14.893  1.00 25.00           C
ATOM    105  CA  ALA   105       8.262  52.508 -11.904  1.00 25.00           C
ATOM    106  CA  GLY   106       9.177  54.101  -8.527  1.00 25.00           C
ATOM    107  CA  ASP   107       8.830  53.898  -4.710  1.00 25.00           C
ATOM    108  CA  ALA   108       7.566  51.381  -2.153  1.00 25.00           C
ATOM    109  CA  GLY   109       5.354  49.216   0.106  1.00 25.00           C
ATOM    110  CA  MET   110       2.600  48.425   2.647  1.00 25.00           C
ATOM    111  CA  CYS   111       0.193  47.544  -0.197  1.00 25.00           C
ATOM    112  CA  LEU   112       2.835  45.249  -1.755  1.00 25.00           C
ATOM    113  CA  ASP   113       3.377  43.537   1.627  1.00 25.00           C
ATOM    114  CA  LEU   114      -0.400  43.035   2.006  1.00 25.00           C
ATOM    115  CA  LEU   115      -0.578  41.531  -1.511  1.00 25.00           C
ATOM    116  CA  ASP   116      -1.959  38.283  -2.947  1.00 25.00           C
ATOM    117  CA  ASP   117      -2.552  34.666  -3.852  1.00 25.00           C
ATOM    118  CA  GLY   118      -3.518  30.935  -3.792  1.00 25.00           C
ATOM    119  CA  THR   119      -3.678  27.556  -5.517  1.00 25.00           C
ATOM    120  CA  PHE   120      -4.274  23.913  -6.455  1.00 25.00           C
ATOM    121  CA  LYS   121      -4.687  20.223  -5.421  1.00 25.00           C
ATOM    122  CA  PRO   122      -8.291  19.508  -4.408  1.00 25.00           C
ATOM    123  CA  LYS   123     -10.251  22.246  -2.612  1.00 25.00           C
TER
END
