
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  123 (  123),  selected  121 , name T0382TS393_3
# Molecule2: number of CA atoms  121 (  929),  selected  121 , name T0382.pdb
# PARAMETERS: T0382TS393_3.T0382.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    33        54 - 86          4.97    19.14
  LCS_AVERAGE:     22.53

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    22        32 - 53          1.96    25.38
  LCS_AVERAGE:     11.59

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    20        33 - 52          0.34    25.12
  LCS_AVERAGE:      8.93

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  121
LCS_GDT     K       3     K       3      5    6   16     0    4    4    5    5    7    9    9   10   12   14   14   26   29   31   34   36   38   46   53 
LCS_GDT     L       4     L       4      5    7   17     3    4    4    5    7    8    9    9   10   16   21   24   27   35   39   42   44   53   58   65 
LCS_GDT     D       5     D       5      5    7   24     3    4    6    8   10   12   14   15   19   23   30   36   41   44   48   51   54   55   59   66 
LCS_GDT     L       6     L       6      5    7   24     4    4    4    5    7    8   10   19   25   33   39   43   47   47   50   52   54   55   59   66 
LCS_GDT     H       7     H       7      5    7   24     4    6    8   11   17   19   21   25   28   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     Q       8     Q       8      4    7   24     4    4    4   11   17   19   21   24   28   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     M       9     M       9      4   13   24     4    4    4    7   10   17   21   25   28   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     T      10     T      10     12   13   24    12   12   12   12   19   23   23   25   27   34   37   41   47   47   50   52   53   55   56   59 
LCS_GDT     T      11     T      11     12   13   24    12   12   12   12   19   23   23   25   28   35   40   43   47   47   50   52   54   55   58   66 
LCS_GDT     Q      12     Q      12     12   13   24    12   12   12   12   19   23   23   25   28   34   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     D      13     D      13     12   13   24    12   12   12   12   18   23   23   25   28   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     L      14     L      14     12   13   24    12   12   12   12   19   23   23   25   28   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     V      15     V      15     12   13   24    12   12   12   12   12   23   23   25   28   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     A      16     A      16     12   13   24    12   12   12   12   12   13   18   25   28   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     L      17     L      17     12   13   24    12   12   12   12   19   23   23   25   28   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     F      18     F      18     12   13   24    12   12   12   12   19   23   23   25   28   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     A      19     A      19     12   13   24    12   12   12   12   12   13   14   20   28   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     K      20     K      20     12   13   24    12   12   12   12   12   13   18   25   28   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     V      21     V      21     12   13   24    12   12   12   12   19   23   23   25   28   35   40   43   47   47   50   52   54   55   58   66 
LCS_GDT     T      22     T      22      3   13   24     3    3    3    4    5   13   13   15   18   23   26   40   43   44   50   52   54   55   56   58 
LCS_GDT     V      23     V      23     10   11   24    10   10   10   10   10   10   10   15   18   24   27   40   43   44   50   52   54   55   56   58 
LCS_GDT     E      24     E      24     10   11   24    10   10   10   10   10   10   10   14   28   35   40   43   47   47   50   52   54   55   56   65 
LCS_GDT     Q      25     Q      25     10   11   24    10   10   10   10   10   11   13   20   28   34   40   43   47   47   50   52   54   55   58   66 
LCS_GDT     D      26     D      26     10   11   24    10   10   10   10   10   10   10   18   24   25   27   39   44   47   50   52   54   55   59   66 
LCS_GDT     D      27     D      27     10   11   28    10   10   10   10   13   17   20   23   27   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     A      28     A      28     10   11   28    10   10   10   10   12   16   20   23   26   33   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     L      29     L      29     10   11   28    10   10   10   10   10   10   11   15   19   21   23   28   36   43   46   51   54   55   59   66 
LCS_GDT     L      30     L      30     10   11   28    10   10   10   10   10   11   15   19   23   24   24   28   32   36   38   44   48   53   59   66 
LCS_GDT     G      31     G      31     10   11   28    10   10   10   10   10   10   10   11   20   24   24   28   32   36   38   44   48   53   59   65 
LCS_GDT     N      32     N      32     10   22   28    10   10   10   10   10   10   12   21   23   24   24   28   32   36   38   44   48   53   59   65 
LCS_GDT     Q      33     Q      33     20   22   28    12   20   20   20   20   20   20   21   23   24   24   25   32   36   38   44   48   53   57   65 
LCS_GDT     I      34     I      34     20   22   28    19   20   20   20   20   20   20   21   23   24   24   24   25   26   33   36   38   45   53   58 
LCS_GDT     S      35     S      35     20   22   28    19   20   20   20   20   20   20   21   23   24   24   24   25   26   33   38   44   51   58   63 
LCS_GDT     R      36     R      36     20   22   28    19   20   20   20   20   20   20   21   23   24   24   28   32   36   38   44   49   53   59   66 
LCS_GDT     F      37     F      37     20   22   28    19   20   20   20   20   20   20   21   23   24   24   25   32   36   38   44   48   53   59   65 
LCS_GDT     N      38     N      38     20   22   28    19   20   20   20   20   20   20   21   23   24   24   24   25   31   37   44   47   51   59   64 
LCS_GDT     R      39     R      39     20   22   28    19   20   20   20   20   20   20   21   23   24   24   28   32   36   38   44   49   53   59   66 
LCS_GDT     L      40     L      40     20   22   28    19   20   20   20   20   20   20   21   23   24   24   28   32   36   38   44   49   53   59   66 
LCS_GDT     F      41     F      41     20   22   28    19   20   20   20   20   20   20   21   23   24   24   28   32   36   38   44   48   53   59   66 
LCS_GDT     G      42     G      42     20   22   28    19   20   20   20   20   20   20   21   23   24   24   28   32   36   38   44   49   53   59   66 
LCS_GDT     V      43     V      43     20   22   28    19   20   20   20   20   20   20   21   23   24   24   28   32   36   38   44   49   53   59   66 
LCS_GDT     M      44     M      44     20   22   28    19   20   20   20   20   20   20   21   23   24   25   27   33   37   38   42   48   53   59   66 
LCS_GDT     A      45     A      45     20   22   28    19   20   20   20   20   20   20   21   23   24   25   28   32   37   38   44   49   53   59   66 
LCS_GDT     E      46     E      46     20   22   28    19   20   20   20   20   20   20   21   23   24   24   28   32   36   38   44   48   53   59   66 
LCS_GDT     I      47     I      47     20   22   28    19   20   20   20   20   20   20   21   23   24   24   24   27   32   38   41   45   51   57   61 
LCS_GDT     A      48     A      48     20   22   28    19   20   20   20   20   20   20   21   23   24   24   25   28   30   38   41   45   51   57   65 
LCS_GDT     D      49     D      49     20   22   28    19   20   20   20   20   20   20   21   23   24   24   28   32   36   38   44   48   53   59   66 
LCS_GDT     E      50     E      50     20   22   28    19   20   20   20   20   20   20   21   23   24   24   24   25   28   38   41   45   51   57   59 
LCS_GDT     L      51     L      51     20   22   28    19   20   20   20   20   20   20   21   23   24   24   24   25   26   26   29   32   39   47   51 
LCS_GDT     K      52     K      52     20   22   28    19   20   20   20   20   20   20   21   23   24   24   24   25   26   27   36   44   51   56   59 
LCS_GDT     A      53     A      53      3   22   31     3    3    3    5    5   10   15   21   23   24   24   28   32   36   38   44   50   53   59   66 
LCS_GDT     R      54     R      54      3    5   33     3    3    4    5    8   12   14   19   22   26   27   29   36   46   47   51   54   55   59   66 
LCS_GDT     D      55     D      55      3    5   33     3    3    4    4   11   15   17   20   22   26   27   34   43   46   50   52   54   55   59   66 
LCS_GDT     G      56     G      56      3   11   33     3    3    5   10   17   19   21   24   28   34   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     D      57     D      57      5   11   33     3    4    7   10   17   19   21   24   28   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     Q      58     Q      58      6   11   33     4   12   16   17   18   19   21   24   28   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     R      59     R      59      6   11   33     3    5    8   10   13   19   20   23   28   34   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     T      60     T      60      6   11   33     4    5    8   11   17   19   21   24   28   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     A      61     A      61      6   11   33     4    5    8   11   17   19   21   25   28   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     L      62     L      62      6   11   33     4    5    8   11   17   19   21   25   28   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     L      63     L      63      6   11   33     4    7    8   11   17   19   21   25   28   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     S      64     S      64      6   11   33     4    7    8   11   17   19   21   25   28   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     L      65     L      65      6   11   33     4    7    8   11   19   23   23   25   28   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     F      66     F      66      6   11   33     4    7    8   11   19   23   23   25   28   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     E      67     E      67      4   11   33     3    4    6    9   19   23   23   25   27   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     Y      68     Y      68      3    5   33     3    4    5    5    5   13   18   23   25   27   29   32   34   37   40   42   49   54   59   66 
LCS_GDT     P      69     P      69      4    5   33     3    4    5    8   10   14   18   23   25   27   29   32   34   37   40   41   49   51   57   62 
LCS_GDT     N      70     N      70      4   14   33     3    4    5    8   10   14   18   23   25   27   29   32   34   37   42   44   49   52   58   65 
LCS_GDT     M      71     M      71     13   16   33    10   12   12   14   19   23   23   25   27   30   36   41   47   47   50   52   54   55   59   66 
LCS_GDT     Q      72     Q      72     13   16   33    10   12   12   14   15   15   21   25   26   30   36   39   45   46   50   52   54   55   59   66 
LCS_GDT     V      73     V      73     13   16   33    10   12   12   14   15   19   21   25   28   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     R      74     R      74     13   16   33    10   12   12   14   19   23   23   25   28   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     L      75     L      75     13   16   33    10   12   12   14   19   23   23   25   28   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     Q      76     Q      76     13   16   33    10   12   12   14   17   23   23   25   28   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     A      77     A      77     13   16   33    10   12   12   14   19   23   23   25   28   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     A      78     A      78     13   16   33    10   12   12   14   19   23   23   25   28   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     K      79     K      79     13   16   33    10   12   12   14   19   23   23   25   28   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     L      80     L      80     13   16   33    10   12   12   14   19   23   23   25   28   35   40   43   47   47   50   52   54   55   58   66 
LCS_GDT     T      81     T      81     13   16   33     8   12   12   14   19   23   23   25   27   30   35   43   47   47   50   52   54   55   58   66 
LCS_GDT     L      82     L      82     13   16   33     7   12   12   14   19   23   23   25   27   32   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     A      83     A      83     13   16   33     4    5    8   14   15   23   23   25   27   30   32   33   34   43   47   50   52   54   56   58 
LCS_GDT     V      84     V      84      5   18   33     4    5   11   14   15   15   18   23   25   27   29   31   34   37   39   42   45   48   54   55 
LCS_GDT     A      85     A      85     16   19   33     6   15   16   17   18   19   20   23   25   27   29   32   34   37   38   42   45   48   54   57 
LCS_GDT     P      86     P      86     16   19   33    14   15   16   17   18   19   20   23   25   27   29   31   33   37   38   41   45   48   51   55 
LCS_GDT     V      87     V      87     16   19   32    14   15   16   17   18   19   20   21   24   25   26   28   33   37   38   41   43   45   49   50 
LCS_GDT     K      88     K      88     16   19   31    14   15   16   17   18   19   20   21   24   25   26   28   33   37   38   41   43   45   49   50 
LCS_GDT     A      89     A      89     16   19   29    14   15   16   17   18   19   20   21   24   25   26   28   33   37   38   41   43   45   49   50 
LCS_GDT     R      90     R      90     16   19   29    14   15   16   17   18   19   20   21   24   25   26   28   33   37   38   41   43   45   49   50 
LCS_GDT     E      91     E      91     16   19   29    14   15   16   17   18   19   20   21   24   25   26   28   33   37   38   41   43   45   49   50 
LCS_GDT     Q      92     Q      92     16   19   29    14   15   16   17   18   19   20   21   24   25   26   28   33   37   38   41   43   45   49   50 
LCS_GDT     L      93     L      93     16   19   29    14   15   16   17   18   19   20   21   24   25   26   28   33   37   38   41   43   45   49   50 
LCS_GDT     E      94     E      94     16   19   29    14   15   16   17   18   19   20   21   24   25   26   28   33   37   38   41   43   45   49   50 
LCS_GDT     A      95     A      95     16   19   29    14   15   16   17   18   19   20   21   24   25   26   28   33   37   38   41   43   45   49   50 
LCS_GDT     I      96     I      96     16   19   29    14   15   16   17   18   19   20   21   24   25   26   28   33   37   38   41   43   45   49   50 
LCS_GDT     V      97     V      97     16   19   29    14   15   16   17   18   19   20   21   24   25   26   27   32   37   38   41   43   45   49   50 
LCS_GDT     S      98     S      98     16   19   29    14   15   16   17   18   19   20   21   24   25   26   27   32   36   38   40   43   45   48   50 
LCS_GDT     S      99     S      99     16   19   29    14   15   16   17   18   19   20   21   24   25   26   27   33   37   38   40   43   45   49   50 
LCS_GDT     K     100     K     100     16   19   29     3    4   12   17   18   19   20   21   24   25   26   27   32   37   38   41   43   45   49   50 
LCS_GDT     W     101     W     101      3   19   29     0    5    9   15   18   19   20   21   24   25   26   28   33   37   38   41   43   45   49   50 
LCS_GDT     F     102     F     102      3   19   29     0    3    4    6    8   10   16   20   24   25   26   28   33   37   38   41   43   45   49   50 
LCS_GDT     P     103     P     103      3   19   29     1    5   10   15   18   19   20   21   24   25   26   27   32   37   38   41   43   45   49   50 
LCS_GDT     Q     104     Q     104      3    4   29     0    3    3    3    4    8   19   21   24   25   26   27   31   34   37   38   43   45   49   50 
LCS_GDT     A     105     A     105      3    4   29     0    3    3    3    5   10   12   13   15   17   19   24   27   30   37   41   43   45   49   50 
LCS_GDT     G     106     G     106      3    4   29     1    3    3    6    8   11   12   13   15   17   25   28   33   37   38   41   43   45   49   50 
LCS_GDT     D     107     D     107      3    4   29     1    3    3    6    8   11   12   15   18   24   26   28   33   37   38   41   43   45   49   50 
LCS_GDT     A     108     A     108      0    9   29     0    0    3    5    7   11   12   13   15   21   25   28   33   37   38   41   43   45   49   50 
LCS_GDT     G     109     G     109      8    9   29     7    7    8    8    8    9   11   11   14   16   21   24   26   33   38   40   43   45   49   50 
LCS_GDT     M     110     M     110      8    9   16     7    7    8    8    8    9   11   12   14   15   21   24   26   29   31   35   39   41   50   56 
LCS_GDT     C     111     C     111      8    9   16     7    7    8    8    8    9   11   11   14   17   21   27   33   36   38   41   49   53   59   66 
LCS_GDT     L     112     L     112      8    9   16     7    7    8    8    8    9   11   12   15   20   24   28   33   40   41   47   49   53   59   66 
LCS_GDT     D     113     D     113      8    9   16     7    7    8    8    8    9   11   12   14   17   21   24   27   29   31   35   39   50   55   62 
LCS_GDT     L     114     L     114      8    9   16     7    7    8    8    8    9   11   12   14   17   21   24   27   29   33   41   45   53   59   64 
LCS_GDT     L     115     L     115      8    9   16     7    7    8    8    8    9   11   13   18   22   30   40   47   47   50   52   54   55   59   66 
LCS_GDT     D     116     D     116      8    9   16     1    4    8    8    8    9   11   13   17   28   31   40   47   47   50   52   54   55   59   66 
LCS_GDT     D     117     D     117      3    5   16     3    3    3    4    9   14   16   17   26   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     G     118     G     118      3    6   15     3    7    8   11   17   19   21   24   28   35   40   43   47   47   50   52   54   55   59   66 
LCS_GDT     T     119     T     119      4    6   15     3    4    4    5    5    6   14   19   28   32   37   40   43   46   50   51   53   54   58   64 
LCS_GDT     F     120     F     120      4    6   15     3    4    4    5    5    6   11   19   19   20   21   25   28   34   40   43   47   53   58   63 
LCS_GDT     K     121     K     121      4    6   15     3    4    4    5    5    6    7    9   10   11   14   16   18   19   37   41   44   46   48   54 
LCS_GDT     P     122     P     122      4    6   15     3    4    4    5    5    6    6    8   10   11   14   16   18   19   19   21   23   26   31   38 
LCS_GDT     K     123     K     123      4    6   15     0    3    4    5    5    6    7    8   10   12   14   16   18   19   19   21   23   26   34   41 
LCS_AVERAGE  LCS_A:  14.35  (   8.93   11.59   22.53 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     19     20     20     20     20     23     23     25     28     35     40     43     47     47     50     52     54     55     59     66 
GDT PERCENT_CA  15.70  16.53  16.53  16.53  16.53  19.01  19.01  20.66  23.14  28.93  33.06  35.54  38.84  38.84  41.32  42.98  44.63  45.45  48.76  54.55
GDT RMS_LOCAL    0.26   0.34   0.34   0.34   0.34   2.11   2.11   2.30   3.10   3.63   3.90   4.10   4.35   4.35   4.60   4.82   5.20   5.26   6.93   7.16
GDT RMS_ALL_CA  25.08  25.12  25.12  25.12  25.12  19.68  19.68  19.66  18.02  18.00  17.99  17.77  17.71  17.71  17.85  17.85  17.53  17.59  16.13  16.27

#      Molecule1      Molecule2       DISTANCE
LGA    K       3      K       3         31.269
LGA    L       4      L       4         24.013
LGA    D       5      D       5         20.286
LGA    L       6      L       6         13.927
LGA    H       7      H       7         11.683
LGA    Q       8      Q       8         12.148
LGA    M       9      M       9          6.906
LGA    T      10      T      10          2.296
LGA    T      11      T      11          1.701
LGA    Q      12      Q      12          2.136
LGA    D      13      D      13          2.403
LGA    L      14      L      14          0.770
LGA    V      15      V      15          2.722
LGA    A      16      A      16          3.832
LGA    L      17      L      17          2.199
LGA    F      18      F      18          2.194
LGA    A      19      A      19          4.736
LGA    K      20      K      20          4.243
LGA    V      21      V      21          1.588
LGA    T      22      T      22          6.822
LGA    V      23      V      23         10.536
LGA    E      24      E      24          8.447
LGA    Q      25      Q      25          9.836
LGA    D      26      D      26         12.387
LGA    D      27      D      27         10.793
LGA    A      28      A      28         12.731
LGA    L      29      L      29         16.868
LGA    L      30      L      30         18.595
LGA    G      31      G      31         20.005
LGA    N      32      N      32         22.788
LGA    Q      33      Q      33         22.311
LGA    I      34      I      34         21.384
LGA    S      35      S      35         22.033
LGA    R      36      R      36         22.199
LGA    F      37      F      37         21.577
LGA    N      38      N      38         21.731
LGA    R      39      R      39         22.389
LGA    L      40      L      40         21.992
LGA    F      41      F      41         21.649
LGA    G      42      G      42         22.412
LGA    V      43      V      43         22.616
LGA    M      44      M      44         21.804
LGA    A      45      A      45         22.163
LGA    E      46      E      46         23.142
LGA    I      47      I      47         22.415
LGA    A      48      A      48         21.835
LGA    D      49      D      49         23.307
LGA    E      50      E      50         23.639
LGA    L      51      L      51         22.283
LGA    K      52      K      52         22.963
LGA    A      53      A      53         22.936
LGA    R      54      R      54         19.233
LGA    D      55      D      55         18.263
LGA    G      56      G      56         14.980
LGA    D      57      D      57         12.685
LGA    Q      58      Q      58          8.735
LGA    R      59      R      59         10.822
LGA    T      60      T      60          9.517
LGA    A      61      A      61          6.350
LGA    L      62      L      62          5.903
LGA    L      63      L      63          6.104
LGA    S      64      S      64          4.656
LGA    L      65      L      65          2.315
LGA    F      66      F      66          2.503
LGA    E      67      E      67          2.476
LGA    Y      68      Y      68          9.077
LGA    P      69      P      69          9.650
LGA    N      70      N      70          8.607
LGA    M      71      M      71          2.286
LGA    Q      72      Q      72          4.688
LGA    V      73      V      73          3.826
LGA    R      74      R      74          0.690
LGA    L      75      L      75          2.539
LGA    Q      76      Q      76          2.930
LGA    A      77      A      77          1.809
LGA    A      78      A      78          1.371
LGA    K      79      K      79          1.939
LGA    L      80      L      80          1.280
LGA    T      81      T      81          1.788
LGA    L      82      L      82          1.862
LGA    A      83      A      83          2.995
LGA    V      84      V      84          5.754
LGA    A      85      A      85          6.286
LGA    P      86      P      86          7.493
LGA    V      87      V      87         14.851
LGA    K      88      K      88         16.474
LGA    A      89      A      89         15.393
LGA    R      90      R      90         18.360
LGA    E      91      E      91         24.303
LGA    Q      92      Q      92         25.533
LGA    L      93      L      93         26.359
LGA    E      94      E      94         30.428
LGA    A      95      A      95         34.964
LGA    I      96      I      96         36.080
LGA    V      97      V      97         37.854
LGA    S      98      S      98         42.635
LGA    S      99      S      99         45.842
LGA    K     100      K     100         47.312
LGA    W     101      W     101         45.425
LGA    F     102      F     102         42.549
LGA    P     103      P     103         43.524
LGA    Q     104      Q     104         38.777
LGA    A     105      A     105         35.690
LGA    G     106      G     106         33.218
LGA    D     107      D     107         28.342
LGA    A     108      A     108         23.275
LGA    G     109      G     109         23.060
LGA    M     110      M     110         22.287
LGA    C     111      C     111         15.612
LGA    L     112      L     112         13.573
LGA    D     113      D     113         16.900
LGA    L     114      L     114         15.227
LGA    L     115      L     115          8.262
LGA    D     116      D     116          7.412
LGA    D     117      D     117          8.894
LGA    G     118      G     118          8.614
LGA    T     119      T     119         13.421
LGA    F     120      F     120         16.922
LGA    K     121      K     121         20.416
LGA    P     122      P     122         23.946
LGA    K     123      K     123         25.548

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  123  121    4.0     25    2.30    24.174    21.032     1.040

LGA_LOCAL      RMSD =  2.304  Number of atoms =   25  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 19.656  Number of atoms =  121 
Std_ALL_ATOMS  RMSD = 14.407  (standard rmsd on all 121 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.727574 * X  +   0.102409 * Y  +  -0.678343 * Z  + -17.105650
  Y_new =   0.636130 * X  +   0.269505 * Y  +   0.722984 * Z  +  51.536362
  Z_new =   0.256857 * X  +  -0.957538 * Y  +   0.130940 * Z  +  -5.880073 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.434893    1.706699  [ DEG:   -82.2133     97.7867 ]
  Theta =  -0.259768   -2.881824  [ DEG:   -14.8836   -165.1164 ]
  Phi   =   0.718443   -2.423150  [ DEG:    41.1637   -138.8363 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0382TS393_3                                  
REMARK     2: T0382.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0382TS393_3.T0382.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  123  121   4.0   25   2.30  21.032    14.41
REMARK  ---------------------------------------------------------- 
MOLECULE T0382TS393_3
PFRMAT TS
TARGET T0382
MODEL 3
PARENT N/A
ATOM      1  CA  MET     1     -29.170  38.815 -24.702  1.00 25.00           C
ATOM      2  CA  SER     2     -27.031  35.831 -25.593  1.00 25.00           C
ATOM      3  CA  LYS     3     -23.328  36.143 -24.776  1.00 25.00           C
ATOM      4  CA  LEU     4     -20.041  36.893 -23.123  1.00 25.00           C
ATOM      5  CA  ASP     5     -20.463  40.050 -20.968  1.00 25.00           C
ATOM      6  CA  LEU     6     -16.783  40.484 -20.000  1.00 25.00           C
ATOM      7  CA  HIS     7     -17.784  42.866 -17.173  1.00 25.00           C
ATOM      8  CA  GLN     8     -20.373  40.337 -15.923  1.00 25.00           C
ATOM      9  CA  MET     9     -17.730  37.564 -15.985  1.00 25.00           C
ATOM     10  CA  THR    10     -15.316  39.788 -14.013  1.00 25.00           C
ATOM     11  CA  THR    11     -18.053  40.519 -11.437  1.00 25.00           C
ATOM     12  CA  GLN    12     -18.774  36.773 -11.105  1.00 25.00           C
ATOM     13  CA  ASP    13     -15.043  36.075 -10.597  1.00 25.00           C
ATOM     14  CA  LEU    14     -14.875  38.796  -7.906  1.00 25.00           C
ATOM     15  CA  VAL    15     -17.921  37.280  -6.149  1.00 25.00           C
ATOM     16  CA  ALA    16     -16.289  33.818  -6.250  1.00 25.00           C
ATOM     17  CA  LEU    17     -13.066  35.267  -4.773  1.00 25.00           C
ATOM     18  CA  PHE    18     -15.075  36.958  -1.986  1.00 25.00           C
ATOM     19  CA  ALA    19     -16.856  33.653  -1.231  1.00 25.00           C
ATOM     20  CA  LYS    20     -13.485  31.841  -1.082  1.00 25.00           C
ATOM     21  CA  VAL    21     -12.131  34.507   1.311  1.00 25.00           C
ATOM     22  CA  THR    22      -9.605  32.973   3.748  1.00 25.00           C
ATOM     23  CA  VAL    23      -6.162  32.390   5.362  1.00 25.00           C
ATOM     24  CA  GLU    24      -4.831  35.959   5.767  1.00 25.00           C
ATOM     25  CA  GLN    25      -3.581  35.929   2.148  1.00 25.00           C
ATOM     26  CA  ASP    26      -7.005  34.704   0.949  1.00 25.00           C
ATOM     27  CA  ASP    27      -8.725  37.490   2.934  1.00 25.00           C
ATOM     28  CA  ALA    28      -6.362  40.080   1.392  1.00 25.00           C
ATOM     29  CA  LEU    29      -7.123  38.726  -2.108  1.00 25.00           C
ATOM     30  CA  LEU    30     -10.880  38.938  -1.402  1.00 25.00           C
ATOM     31  CA  GLY    31     -10.475  42.551  -0.197  1.00 25.00           C
ATOM     32  CA  ASN    32      -8.517  43.415  -3.373  1.00 25.00           C
ATOM     33  CA  GLN    33     -11.262  41.834  -5.525  1.00 25.00           C
ATOM     34  CA  ILE    34     -13.926  43.851  -3.652  1.00 25.00           C
ATOM     35  CA  SER    35     -11.915  47.064  -4.202  1.00 25.00           C
ATOM     36  CA  ARG    36     -11.609  46.263  -7.935  1.00 25.00           C
ATOM     37  CA  PHE    37     -15.385  45.661  -8.139  1.00 25.00           C
ATOM     38  CA  ASN    38     -16.039  49.002  -6.386  1.00 25.00           C
ATOM     39  CA  ARG    39     -13.695  50.776  -8.840  1.00 25.00           C
ATOM     40  CA  LEU    40     -15.515  49.151 -11.792  1.00 25.00           C
ATOM     41  CA  PHE    41     -18.885  50.273 -10.363  1.00 25.00           C
ATOM     42  CA  GLY    42     -17.555  53.841  -9.959  1.00 25.00           C
ATOM     43  CA  VAL    43     -16.305  53.812 -13.579  1.00 25.00           C
ATOM     44  CA  MET    44     -19.730  52.586 -14.777  1.00 25.00           C
ATOM     45  CA  ALA    45     -21.449  55.373 -12.791  1.00 25.00           C
ATOM     46  CA  GLU    46     -19.086  57.963 -14.334  1.00 25.00           C
ATOM     47  CA  ILE    47     -19.847  56.608 -17.835  1.00 25.00           C
ATOM     48  CA  ALA    48     -23.605  56.821 -17.127  1.00 25.00           C
ATOM     49  CA  ASP    49     -23.199  60.434 -15.924  1.00 25.00           C
ATOM     50  CA  GLU    50     -21.241  61.298 -19.099  1.00 25.00           C
ATOM     51  CA  LEU    51     -23.986  59.717 -21.252  1.00 25.00           C
ATOM     52  CA  LYS    52     -26.649  61.734 -19.378  1.00 25.00           C
ATOM     53  CA  ALA    53     -28.018  59.321 -16.817  1.00 25.00           C
ATOM     54  CA  ARG    54     -27.959  57.230 -13.574  1.00 25.00           C
ATOM     55  CA  ASP    55     -28.782  57.132  -9.828  1.00 25.00           C
ATOM     56  CA  GLY    56     -29.311  53.714  -8.386  1.00 25.00           C
ATOM     57  CA  ASP    57     -26.356  51.251  -8.426  1.00 25.00           C
ATOM     58  CA  GLN    58     -23.232  50.295  -6.480  1.00 25.00           C
ATOM     59  CA  ARG    59     -25.035  52.033  -3.583  1.00 25.00           C
ATOM     60  CA  THR    60     -27.723  49.306  -3.587  1.00 25.00           C
ATOM     61  CA  ALA    61     -25.014  46.601  -3.528  1.00 25.00           C
ATOM     62  CA  LEU    62     -23.294  48.353  -0.589  1.00 25.00           C
ATOM     63  CA  LEU    63     -26.628  48.535   1.285  1.00 25.00           C
ATOM     64  CA  SER    64     -27.217  44.804   0.650  1.00 25.00           C
ATOM     65  CA  LEU    65     -23.705  44.004   1.950  1.00 25.00           C
ATOM     66  CA  PHE    66     -24.362  46.098   5.089  1.00 25.00           C
ATOM     67  CA  GLU    67     -27.674  44.257   5.654  1.00 25.00           C
ATOM     68  CA  TYR    68     -29.007  47.751   6.349  1.00 25.00           C
ATOM     69  CA  PRO    69     -27.152  47.789   9.604  1.00 25.00           C
ATOM     70  CA  ASN    70     -23.495  47.312  10.460  1.00 25.00           C
ATOM     71  CA  MET    71     -21.647  43.966  10.199  1.00 25.00           C
ATOM     72  CA  GLN    72     -18.356  45.705  11.099  1.00 25.00           C
ATOM     73  CA  VAL    73     -16.545  43.757   8.345  1.00 25.00           C
ATOM     74  CA  ARG    74     -19.248  44.761   5.823  1.00 25.00           C
ATOM     75  CA  LEU    75     -18.903  48.427   6.876  1.00 25.00           C
ATOM     76  CA  GLN    76     -15.102  48.216   6.454  1.00 25.00           C
ATOM     77  CA  ALA    77     -15.550  46.689   2.970  1.00 25.00           C
ATOM     78  CA  ALA    78     -17.977  49.496   2.024  1.00 25.00           C
ATOM     79  CA  LYS    79     -15.469  52.114   3.258  1.00 25.00           C
ATOM     80  CA  LEU    80     -12.695  50.465   1.197  1.00 25.00           C
ATOM     81  CA  THR    81     -14.949  50.485  -1.899  1.00 25.00           C
ATOM     82  CA  LEU    82     -15.723  54.194  -1.340  1.00 25.00           C
ATOM     83  CA  ALA    83     -11.983  54.952  -1.017  1.00 25.00           C
ATOM     84  CA  VAL    84     -11.290  53.046  -4.265  1.00 25.00           C
ATOM     85  CA  ALA    85     -14.053  55.017  -6.039  1.00 25.00           C
ATOM     86  CA  PRO    86     -12.569  58.304  -4.752  1.00 25.00           C
ATOM     87  CA  VAL    87      -9.103  57.258  -6.003  1.00 25.00           C
ATOM     88  CA  LYS    88     -10.574  56.399  -9.433  1.00 25.00           C
ATOM     89  CA  ALA    89     -12.311  59.810  -9.569  1.00 25.00           C
ATOM     90  CA  ARG    90      -9.020  61.549  -8.669  1.00 25.00           C
ATOM     91  CA  GLU    91      -7.208  59.601 -11.424  1.00 25.00           C
ATOM     92  CA  GLN    92      -9.912  60.604 -13.945  1.00 25.00           C
ATOM     93  CA  LEU    93      -9.566  64.271 -12.893  1.00 25.00           C
ATOM     94  CA  GLU    94      -5.766  64.059 -13.315  1.00 25.00           C
ATOM     95  CA  ALA    95      -6.213  62.533 -16.799  1.00 25.00           C
ATOM     96  CA  ILE    96      -8.641  65.340 -17.745  1.00 25.00           C
ATOM     97  CA  VAL    97      -6.133  67.957 -16.510  1.00 25.00           C
ATOM     98  CA  SER    98      -3.359  66.308 -18.571  1.00 25.00           C
ATOM     99  CA  SER    99      -5.613  66.330 -21.668  1.00 25.00           C
ATOM    100  CA  LYS   100      -8.114  69.212 -21.472  1.00 25.00           C
ATOM    101  CA  TRP   101     -11.315  70.108 -19.507  1.00 25.00           C
ATOM    102  CA  PHE   102     -13.010  69.531 -16.142  1.00 25.00           C
ATOM    103  CA  PRO   103     -13.989  73.207 -16.033  1.00 25.00           C
ATOM    104  CA  GLN   104     -16.322  74.032 -13.173  1.00 25.00           C
ATOM    105  CA  ALA   105     -18.234  74.438  -9.892  1.00 25.00           C
ATOM    106  CA  GLY   106     -20.345  72.915  -7.139  1.00 25.00           C
ATOM    107  CA  ASP   107     -19.916  69.223  -6.252  1.00 25.00           C
ATOM    108  CA  ALA   108     -19.401  65.459  -6.888  1.00 25.00           C
ATOM    109  CA  GLY   109     -20.035  61.683  -7.171  1.00 25.00           C
ATOM    110  CA  MET   110     -20.947  58.049  -6.383  1.00 25.00           C
ATOM    111  CA  CYS   111     -17.580  57.559  -4.626  1.00 25.00           C
ATOM    112  CA  LEU   112     -18.158  60.740  -2.575  1.00 25.00           C
ATOM    113  CA  ASP   113     -21.647  59.502  -1.593  1.00 25.00           C
ATOM    114  CA  LEU   114     -20.178  56.127  -0.535  1.00 25.00           C
ATOM    115  CA  LEU   115     -17.522  57.914   1.566  1.00 25.00           C
ATOM    116  CA  ASP   116     -16.996  61.199   3.433  1.00 25.00           C
ATOM    117  CA  ASP   117     -17.562  64.472   5.364  1.00 25.00           C
ATOM    118  CA  GLY   118     -17.783  67.531   7.615  1.00 25.00           C
ATOM    119  CA  THR   119     -18.090  66.000  11.092  1.00 25.00           C
ATOM    120  CA  PHE   120     -21.445  65.471  12.738  1.00 25.00           C
ATOM    121  CA  LYS   121     -24.712  67.217  13.397  1.00 25.00           C
ATOM    122  CA  PRO   122     -27.946  65.241  13.461  1.00 25.00           C
ATOM    123  CA  LYS   123     -29.056  66.002   9.902  1.00 25.00           C
TER
END
