
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  123 (  123),  selected  121 , name T0382TS599_1
# Molecule2: number of CA atoms  121 (  929),  selected  121 , name T0382.pdb
# PARAMETERS: T0382TS599_1.T0382.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    57        48 - 104         4.96    22.19
  LONGEST_CONTINUOUS_SEGMENT:    57        49 - 105         4.94    22.46
  LCS_AVERAGE:     43.09

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    36        21 - 56          1.89    19.19
  LCS_AVERAGE:     19.75

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26        31 - 56          0.90    21.23
  LCS_AVERAGE:     13.22

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  121
LCS_GDT     K       3     K       3      5   27   50     2    4    5    7   12   16   23   27   29   32   36   38   40   43   48   52   55   60   63   66 
LCS_GDT     L       4     L       4      5   29   50     3    4    5    7   16   20   26   29   29   32   36   38   41   43   48   52   58   61   63   66 
LCS_GDT     D       5     D       5      5   29   50     3    4   14   20   24   25   27   29   29   32   36   38   41   43   48   55   58   61   63   66 
LCS_GDT     L       6     L       6     17   29   50     5    9   13   18   22   25   26   29   29   32   36   38   41   43   48   55   58   61   63   66 
LCS_GDT     H       7     H       7     20   29   50     5    5   13   19   22   25   27   29   29   32   36   38   41   43   48   52   55   57   62   66 
LCS_GDT     Q       8     Q       8     20   29   53     5   16   19   23   25   26   27   29   32   34   36   38   41   48   52   55   58   61   63   66 
LCS_GDT     M       9     M       9     20   29   53     7   17   21   23   25   26   27   30   32   34   36   40   46   49   53   55   58   61   63   66 
LCS_GDT     T      10     T      10     21   29   54     7   17   21   23   25   26   27   30   32   34   36   38   41   43   49   54   58   61   63   66 
LCS_GDT     T      11     T      11     21   29   54     7   17   21   23   25   26   27   30   32   34   36   38   40   42   44   47   55   57   60   62 
LCS_GDT     Q      12     Q      12     21   29   56     8   17   21   23   25   26   27   30   32   34   36   38   40   42   44   47   53   57   63   66 
LCS_GDT     D      13     D      13     21   29   56     8   17   21   23   25   26   27   30   32   34   36   38   43   48   53   55   58   61   63   66 
LCS_GDT     L      14     L      14     21   29   56     8   17   21   23   25   26   27   30   32   34   36   38   43   48   53   55   58   61   63   66 
LCS_GDT     V      15     V      15     21   29   56     9   17   21   23   25   26   27   30   32   34   36   38   40   43   49   54   58   61   63   66 
LCS_GDT     A      16     A      16     21   29   56     9   17   21   23   25   26   27   30   32   35   37   40   44   48   53   55   58   61   63   66 
LCS_GDT     L      17     L      17     21   29   56     9   17   21   23   25   26   27   30   35   39   42   46   48   50   53   55   58   61   63   66 
LCS_GDT     F      18     F      18     21   29   56     8   17   21   23   25   26   27   30   32   35   40   44   48   50   53   55   58   61   63   66 
LCS_GDT     A      19     A      19     21   29   56     9   17   21   23   25   26   27   30   33   37   41   44   48   50   53   55   58   61   63   66 
LCS_GDT     K      20     K      20     21   29   56     9   17   21   23   25   29   34   36   40   41   44   47   48   50   53   55   58   61   63   66 
LCS_GDT     V      21     V      21     21   36   56     9   17   21   23   25   32   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     T      22     T      22     21   36   56     9   17   21   23   25   26   28   36   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     V      23     V      23     21   36   56     9   17   21   23   28   32   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     E      24     E      24     21   36   56     7   17   25   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     Q      25     Q      25     21   36   56     6   16   21   27   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     D      26     D      26     21   36   56     9   17   25   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     D      27     D      27     21   36   56    10   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     A      28     A      28     21   36   56     8   21   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     L      29     L      29     21   36   56     8   15   21   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     L      30     L      30     21   36   56     8   15   23   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     G      31     G      31     26   36   56     8   15   25   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     N      32     N      32     26   36   56     8   13   18   28   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     Q      33     Q      33     26   36   56     5   21   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     I      34     I      34     26   36   56    10   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     S      35     S      35     26   36   56    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     R      36     R      36     26   36   56    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     F      37     F      37     26   36   56    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     N      38     N      38     26   36   56    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     R      39     R      39     26   36   56    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     L      40     L      40     26   36   56    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     F      41     F      41     26   36   56    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     G      42     G      42     26   36   56    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     V      43     V      43     26   36   56    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     M      44     M      44     26   36   56    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     A      45     A      45     26   36   56    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     E      46     E      46     26   36   56    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     I      47     I      47     26   36   56    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     A      48     A      48     26   36   57    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     D      49     D      49     26   36   57    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     E      50     E      50     26   36   57    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     L      51     L      51     26   36   57    19   23   26   29   33   34   36   38   40   41   45   48   50   51   53   55   58   61   63   66 
LCS_GDT     K      52     K      52     26   36   57    19   23   26   29   33   34   36   38   40   42   47   49   51   52   53   55   58   61   63   66 
LCS_GDT     A      53     A      53     26   36   57    19   23   26   29   33   34   36   38   40   43   47   50   51   52   53   55   58   61   63   66 
LCS_GDT     R      54     R      54     26   36   57    19   23   26   29   33   34   36   38   40   43   47   50   51   52   53   55   58   61   63   66 
LCS_GDT     D      55     D      55     26   36   57    11   23   26   29   33   34   36   38   40   43   47   50   51   52   53   55   58   61   63   66 
LCS_GDT     G      56     G      56     26   36   57    11   23   26   29   33   34   36   38   40   41   45   48   51   52   53   55   58   61   63   66 
LCS_GDT     D      57     D      57      4   35   57     3    4    4    7    8    8   11   19   26   35   45   47   48   50   53   55   58   61   63   66 
LCS_GDT     Q      58     Q      58      5   34   57     3    4    6   13   18   27   30   35   40   43   47   50   51   52   53   55   58   61   63   66 
LCS_GDT     R      59     R      59      5   13   57     4    5    7   16   19   27   31   38   40   43   47   50   51   52   53   55   58   61   63   66 
LCS_GDT     T      60     T      60      5   13   57     4    5    6   12   31   34   36   38   40   43   47   50   51   52   53   55   58   61   63   66 
LCS_GDT     A      61     A      61      6   13   57     4    5    6   13   18   27   30   35   40   43   47   50   51   52   53   55   58   61   63   66 
LCS_GDT     L      62     L      62      8   13   57     4    6   12   16   20   27   30   35   40   43   47   50   51   52   53   55   58   61   63   66 
LCS_GDT     L      63     L      63      8   13   57     4    6   13   16   24   34   35   38   40   43   47   50   51   52   53   55   58   61   63   66 
LCS_GDT     S      64     S      64      8   13   57     3    8   13   18   21   27   30   35   40   43   47   50   51   52   53   55   58   61   63   66 
LCS_GDT     L      65     L      65      8   13   57     5    8   13   18   21   27   30   35   40   43   47   50   51   52   53   55   57   61   63   66 
LCS_GDT     F      66     F      66      8   13   57     5   15   17   18   21   27   30   35   40   43   47   50   51   52   53   55   57   61   63   66 
LCS_GDT     E      67     E      67      8   13   57     6   10   15   18   20   24   30   35   40   43   47   50   51   52   53   55   58   61   63   66 
LCS_GDT     Y      68     Y      68      8   13   57     5    7   10   19   20   27   30   35   40   43   47   50   51   52   53   53   55   56   63   64 
LCS_GDT     P      69     P      69      8   13   57     4    7   10   13   16   22   26   34   37   42   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     N      70     N      70      8   13   57     5    7   10   13   19   27   30   35   40   43   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     M      71     M      71      3   10   57     3    3    4    5    5   11   15   25   38   42   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     Q      72     Q      72      3   10   57     3    3    6   11   14   19   21   34   38   42   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     V      73     V      73      3   10   57     3    3   10   15   20   27   30   35   40   43   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     R      74     R      74      9   10   57     4    9   11   13   13   19   25   34   40   43   47   50   51   52   53   53   55   56   57   59 
LCS_GDT     L      75     L      75      9   10   57    10   13   14   15   20   27   30   35   40   43   47   50   51   52   53   53   55   56   57   59 
LCS_GDT     Q      76     Q      76      9   10   57     8    9   11   13   19   23   29   35   40   43   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     A      77     A      77      9   10   57     8    9    9   13   13   16   23   34   39   43   47   50   51   52   53   53   55   56   57   59 
LCS_GDT     A      78     A      78      9   10   57     8    9   12   15   20   27   30   35   40   43   47   50   51   52   53   53   55   56   59   60 
LCS_GDT     K      79     K      79      9   10   57     8    9   12   16   21   27   30   35   40   43   47   50   51   52   53   53   55   56   57   59 
LCS_GDT     L      80     L      80      9   10   57     8    9   11   13   20   27   30   35   40   43   47   50   51   52   53   53   55   56   57   59 
LCS_GDT     T      81     T      81      9   10   57     8    9   11   14   20   27   30   35   40   43   47   50   51   52   53   53   55   60   63   66 
LCS_GDT     L      82     L      82      9   10   57     8    9   11   15   19   27   30   35   40   43   47   50   51   52   53   53   55   56   59   62 
LCS_GDT     A      83     A      83      9   20   57     3    3    4    9   16   22   29   35   40   43   47   50   51   52   53   53   55   56   63   66 
LCS_GDT     V      84     V      84     17   20   57     3    3    7    9   21   24   30   35   40   43   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     A      85     A      85     17   20   57    13   16   17   19   21   24   30   35   40   43   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     P      86     P      86     17   20   57    13   16   17   19   21   24   28   35   40   43   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     V      87     V      87     17   20   57    13   16   17   19   21   24   30   35   40   43   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     K      88     K      88     17   20   57    13   16   17   19   21   27   30   35   40   43   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     A      89     A      89     17   20   57    13   16   17   19   21   24   30   35   40   43   47   50   51   52   53   53   55   56   59   59 
LCS_GDT     R      90     R      90     17   20   57    13   16   17   19   21   24   30   35   40   43   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     E      91     E      91     17   20   57    13   16   17   19   21   27   30   35   40   43   47   50   51   52   53   53   55   56   59   59 
LCS_GDT     Q      92     Q      92     17   20   57    13   16   17   19   21   27   30   35   40   43   47   50   51   52   53   53   55   56   59   65 
LCS_GDT     L      93     L      93     17   20   57    13   16   17   19   21   27   30   35   40   43   47   50   51   52   53   53   55   56   59   59 
LCS_GDT     E      94     E      94     17   20   57    13   16   17   19   21   27   30   35   40   43   47   50   51   52   53   53   55   56   59   59 
LCS_GDT     A      95     A      95     17   20   57    13   16   17   19   21   27   30   35   40   43   47   50   51   52   53   53   55   56   59   60 
LCS_GDT     I      96     I      96     17   20   57    13   16   17   19   21   27   30   35   40   43   47   50   51   52   53   53   55   56   59   59 
LCS_GDT     V      97     V      97     17   20   57    13   16   17   19   21   27   30   35   40   43   47   50   51   52   53   53   55   56   57   59 
LCS_GDT     S      98     S      98     17   20   57    13   16   17   19   21   27   30   35   40   43   47   50   51   52   53   53   55   56   59   59 
LCS_GDT     S      99     S      99     17   20   57    12   16   17   19   21   27   30   35   40   43   47   50   51   52   53   53   55   56   57   59 
LCS_GDT     K     100     K     100     17   20   57     9   16   17   19   21   27   30   35   40   43   47   50   51   52   53   53   55   56   57   59 
LCS_GDT     W     101     W     101     17   20   57     3    4   14   18   19   23   28   34   40   43   47   50   51   52   53   53   55   56   57   59 
LCS_GDT     F     102     F     102      3   20   57     3    8   17   19   21   24   30   35   40   43   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     P     103     P     103      3   20   57     3    3    4    5   11   19   22   30   38   42   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     Q     104     Q     104      4    5   57     3    4    7   10   13   17   25   33   38   42   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     A     105     A     105      4    5   57     3    4    5    5    8   11   12   13   16   22   26   35   41   45   50   52   55   56   57   58 
LCS_GDT     G     106     G     106      4   12   56     3    4    5    5    7   10   13   15   16   18   23   26   29   39   43   47   52   55   57   58 
LCS_GDT     D     107     D     107     14   17   56    10   13   13   15   16   18   19   19   19   24   32   36   42   47   51   53   55   56   57   58 
LCS_GDT     A     108     A     108     14   17   51    10   13   14   15   17   18   19   19   19   20   21   27   34   39   45   50   55   56   57   58 
LCS_GDT     G     109     G     109     14   17   24    10   13   14   15   17   18   19   19   19   20   20   24   25   27   28   33   36   43   47   52 
LCS_GDT     M     110     M     110     14   17   24    10   13   14   15   17   18   19   19   19   20   20   24   26   28   33   38   42   47   52   55 
LCS_GDT     C     111     C     111     14   17   24    10   13   14   15   17   18   19   19   19   20   20   24   26   29   35   38   45   49   52   56 
LCS_GDT     L     112     L     112     14   17   24    10   13   14   15   17   18   19   19   19   20   20   24   25   27   28   33   36   40   47   49 
LCS_GDT     D     113     D     113     14   17   24    10   13   14   15   17   18   19   19   19   20   20   24   25   27   28   31   32   36   41   45 
LCS_GDT     L     114     L     114     14   17   24    10   13   14   15   17   18   19   19   19   20   20   24   25   27   28   31   34   39   42   49 
LCS_GDT     L     115     L     115     14   17   24    10   13   14   15   17   18   19   19   19   20   20   24   25   27   31   35   37   43   46   50 
LCS_GDT     D     116     D     116     14   17   24    10   13   14   15   17   18   19   19   19   20   20   24   25   27   27   30   35   39   40   47 
LCS_GDT     D     117     D     117     14   17   24    10   13   14   15   17   18   19   19   19   20   20   24   25   27   28   30   35   39   40   47 
LCS_GDT     G     118     G     118     14   17   24     7   13   14   15   17   18   19   19   19   20   20   22   24   26   31   35   37   43   47   50 
LCS_GDT     T     119     T     119     14   17   24     3    6   10   15   17   18   19   19   19   20   20   22   24   26   28   31   34   39   40   47 
LCS_GDT     F     120     F     120     14   17   24     3    8   14   15   17   18   19   19   19   20   20   22   24   26   28   31   34   39   40   45 
LCS_GDT     K     121     K     121      4   17   24     3    4    4    5   17   18   19   19   19   20   22   23   25   26   28   31   33   35   38   44 
LCS_GDT     P     122     P     122      4   17   24     1    4   10   15   17   18   19   19   20   22   23   23   25   26   28   30   33   34   38   44 
LCS_GDT     K     123     K     123      3   17   24     2    6   14   15   17   18   19   19   23   26   29   31   32   35   37   41   43   43   43   47 
LCS_AVERAGE  LCS_A:  25.36  (  13.22   19.75   43.09 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     19     23     26     29     33     34     36     38     40     43     47     50     51     52     53     55     58     61     63     66 
GDT PERCENT_CA  15.70  19.01  21.49  23.97  27.27  28.10  29.75  31.40  33.06  35.54  38.84  41.32  42.15  42.98  43.80  45.45  47.93  50.41  52.07  54.55
GDT RMS_LOCAL    0.27   0.48   0.78   1.10   1.43   1.56   1.81   2.09   2.32   3.14   3.49   3.70   3.79   3.89   4.01   4.71   5.22   5.49   5.76   6.04
GDT RMS_ALL_CA  20.99  21.18  20.50  20.34  19.69  19.53  19.28  18.85  18.68  22.24  22.52  22.66  22.60  22.63  22.56  18.14  18.48  18.10  17.95  17.84

#      Molecule1      Molecule2       DISTANCE
LGA    K       3      K       3         14.963
LGA    L       4      L       4         14.720
LGA    D       5      D       5         15.087
LGA    L       6      L       6         13.984
LGA    H       7      H       7         16.900
LGA    Q       8      Q       8         15.136
LGA    M       9      M       9         12.872
LGA    T      10      T      10         14.846
LGA    T      11      T      11         16.120
LGA    Q      12      Q      12         14.766
LGA    D      13      D      13         11.218
LGA    L      14      L      14         11.232
LGA    V      15      V      15         11.719
LGA    A      16      A      16          9.750
LGA    L      17      L      17          7.150
LGA    F      18      F      18          7.865
LGA    A      19      A      19          7.447
LGA    K      20      K      20          5.138
LGA    V      21      V      21          3.663
LGA    T      22      T      22          4.685
LGA    V      23      V      23          3.967
LGA    E      24      E      24          1.834
LGA    Q      25      Q      25          1.363
LGA    D      26      D      26          1.171
LGA    D      27      D      27          1.908
LGA    A      28      A      28          1.062
LGA    L      29      L      29          1.666
LGA    L      30      L      30          2.589
LGA    G      31      G      31          3.205
LGA    N      32      N      32          3.102
LGA    Q      33      Q      33          2.858
LGA    I      34      I      34          3.661
LGA    S      35      S      35          2.507
LGA    R      36      R      36          2.201
LGA    F      37      F      37          2.765
LGA    N      38      N      38          2.506
LGA    R      39      R      39          1.669
LGA    L      40      L      40          1.839
LGA    F      41      F      41          2.056
LGA    G      42      G      42          1.690
LGA    V      43      V      43          1.231
LGA    M      44      M      44          1.723
LGA    A      45      A      45          1.911
LGA    E      46      E      46          1.205
LGA    I      47      I      47          1.558
LGA    A      48      A      48          2.156
LGA    D      49      D      49          1.512
LGA    E      50      E      50          1.542
LGA    L      51      L      51          2.472
LGA    K      52      K      52          2.391
LGA    A      53      A      53          1.909
LGA    R      54      R      54          2.736
LGA    D      55      D      55          2.844
LGA    G      56      G      56          3.147
LGA    D      57      D      57          5.424
LGA    Q      58      Q      58          4.525
LGA    R      59      R      59          3.903
LGA    T      60      T      60          2.683
LGA    A      61      A      61          6.012
LGA    L      62      L      62          6.261
LGA    L      63      L      63          2.886
LGA    S      64      S      64          6.220
LGA    L      65      L      65          9.039
LGA    F      66      F      66          6.841
LGA    E      67      E      67          6.256
LGA    Y      68      Y      68         11.366
LGA    P      69      P      69         13.498
LGA    N      70      N      70         18.492
LGA    M      71      M      71         23.085
LGA    Q      72      Q      72         25.741
LGA    V      73      V      73         19.432
LGA    R      74      R      74         18.836
LGA    L      75      L      75         21.079
LGA    Q      76      Q      76         20.528
LGA    A      77      A      77         16.099
LGA    A      78      A      78         15.292
LGA    K      79      K      79         18.266
LGA    L      80      L      80         16.212
LGA    T      81      T      81         12.636
LGA    L      82      L      82         15.001
LGA    A      83      A      83         12.859
LGA    V      84      V      84         14.723
LGA    A      85      A      85         15.119
LGA    P      86      P      86         18.807
LGA    V      87      V      87         18.093
LGA    K      88      K      88         12.667
LGA    A      89      A      89         13.790
LGA    R      90      R      90         18.032
LGA    E      91      E      91         14.793
LGA    Q      92      Q      92         12.554
LGA    L      93      L      93         17.893
LGA    E      94      E      94         19.590
LGA    A      95      A      95         15.867
LGA    I      96      I      96         19.091
LGA    V      97      V      97         24.122
LGA    S      98      S      98         22.470
LGA    S      99      S      99         21.796
LGA    K     100      K     100         28.056
LGA    W     101      W     101         26.255
LGA    F     102      F     102         31.919
LGA    P     103      P     103         31.915
LGA    Q     104      Q     104         31.457
LGA    A     105      A     105         34.194
LGA    G     106      G     106         37.270
LGA    D     107      D     107         36.030
LGA    A     108      A     108         31.523
LGA    G     109      G     109         37.362
LGA    M     110      M     110         38.928
LGA    C     111      C     111         31.952
LGA    L     112      L     112         31.172
LGA    D     113      D     113         37.485
LGA    L     114      L     114         35.544
LGA    L     115      L     115         28.806
LGA    D     116      D     116         32.104
LGA    D     117      D     117         36.596
LGA    G     118      G     118         31.760
LGA    T     119      T     119         36.167
LGA    F     120      F     120         32.532
LGA    K     121      K     121         30.162
LGA    P     122      P     122         26.491
LGA    K     123      K     123         24.537

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  123  121    4.0     38    2.09    29.959    28.213     1.732

LGA_LOCAL      RMSD =  2.094  Number of atoms =   38  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 18.036  Number of atoms =  121 
Std_ALL_ATOMS  RMSD = 13.366  (standard rmsd on all 121 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.688728 * X  +  -0.441414 * Y  +  -0.575158 * Z  + -19.606773
  Y_new =  -0.208172 * X  +   0.639499 * Y  +  -0.740071 * Z  +  39.872551
  Z_new =   0.694491 * X  +   0.629440 * Y  +   0.348551 * Z  +  -3.802431 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.065080   -2.076512  [ DEG:    61.0246   -118.9754 ]
  Theta =  -0.767712   -2.373880  [ DEG:   -43.9867   -136.0133 ]
  Phi   =  -0.293525    2.848068  [ DEG:   -16.8177    163.1823 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0382TS599_1                                  
REMARK     2: T0382.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0382TS599_1.T0382.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  123  121   4.0   38   2.09  28.213    13.37
REMARK  ---------------------------------------------------------- 
MOLECULE T0382TS599_1
PFRMAT TS                                                                       
TARGET T0382                                                                    
MODEL  1                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1     -13.686  38.034  -8.582  1.00  0.00              
ATOM      2  CA  SER     2     -10.652  35.415  -9.881  1.00  0.00              
ATOM      3  CA  LYS     3     -11.378  31.447 -11.050  1.00  0.00              
ATOM      4  CA  LEU     4     -15.242  30.636 -10.363  1.00  0.00              
ATOM      5  CA  ASP     5     -16.921  31.204 -13.691  1.00  0.00              
ATOM      6  CA  LEU     6     -20.089  33.309 -13.134  1.00  0.00              
ATOM      7  CA  HIS     7     -22.191  31.718 -15.896  1.00  0.00              
ATOM      8  CA  GLN     8     -21.810  28.241 -14.318  1.00  0.00              
ATOM      9  CA  MET     9     -22.380  29.120 -10.705  1.00  0.00              
ATOM     10  CA  THR    10     -25.423  27.759  -8.996  1.00  0.00              
ATOM     11  CA  THR    11     -26.959  29.724  -6.041  1.00  0.00              
ATOM     12  CA  GLN    12     -25.991  26.993  -3.664  1.00  0.00              
ATOM     13  CA  ASP    13     -22.398  27.041  -4.764  1.00  0.00              
ATOM     14  CA  LEU    14     -22.129  30.792  -4.489  1.00  0.00              
ATOM     15  CA  VAL    15     -23.778  30.868  -1.114  1.00  0.00              
ATOM     16  CA  ALA    16     -21.537  28.210   0.352  1.00  0.00              
ATOM     17  CA  LEU    17     -18.405  29.960  -0.941  1.00  0.00              
ATOM     18  CA  PHE    18     -19.439  33.283   0.411  1.00  0.00              
ATOM     19  CA  ALA    19     -20.266  31.811   3.841  1.00  0.00              
ATOM     20  CA  LYS    20     -16.923  30.062   4.018  1.00  0.00              
ATOM     21  CA  VAL    21     -15.032  33.300   3.285  1.00  0.00              
ATOM     22  CA  THR    22     -16.937  35.228   5.950  1.00  0.00              
ATOM     23  CA  VAL    23     -16.306  32.441   8.427  1.00  0.00              
ATOM     24  CA  GLU    24     -12.580  32.185   7.802  1.00  0.00              
ATOM     25  CA  GLN    25     -11.923  35.875   8.194  1.00  0.00              
ATOM     26  CA  ASP    26     -13.791  36.215  11.430  1.00  0.00              
ATOM     27  CA  ASP    27     -12.275  33.234  13.198  1.00  0.00              
ATOM     28  CA  ALA    28      -8.682  33.920  12.317  1.00  0.00              
ATOM     29  CA  LEU    29      -8.731  37.540  13.393  1.00  0.00              
ATOM     30  CA  LEU    30     -10.372  36.751  16.781  1.00  0.00              
ATOM     31  CA  GLY    31      -7.827  34.087  17.647  1.00  0.00              
ATOM     32  CA  ASN    32      -4.844  36.284  16.675  1.00  0.00              
ATOM     33  CA  GLN    33      -2.960  33.766  14.612  1.00  0.00              
ATOM     34  CA  ILE    34       0.080  35.655  13.333  1.00  0.00              
ATOM     35  CA  SER    35       1.005  33.473  10.332  1.00  0.00              
ATOM     36  CA  ARG    36      -2.457  32.547   9.228  1.00  0.00              
ATOM     37  CA  PHE    37      -3.534  36.179   9.879  1.00  0.00              
ATOM     38  CA  ASN    38      -0.896  37.496   7.545  1.00  0.00              
ATOM     39  CA  ARG    39      -2.089  35.002   4.868  1.00  0.00              
ATOM     40  CA  LEU    40      -5.700  36.117   5.405  1.00  0.00              
ATOM     41  CA  PHE    41      -4.660  39.776   5.107  1.00  0.00              
ATOM     42  CA  GLY    42      -2.727  39.153   1.895  1.00  0.00              
ATOM     43  CA  VAL    43      -5.793  37.569   0.282  1.00  0.00              
ATOM     44  CA  MET    44      -7.982  40.475   1.383  1.00  0.00              
ATOM     45  CA  ALA    45      -5.388  42.934   0.084  1.00  0.00              
ATOM     46  CA  GLU    46      -5.356  41.218  -3.346  1.00  0.00              
ATOM     47  CA  ILE    47      -9.189  41.365  -3.456  1.00  0.00              
ATOM     48  CA  ALA    48      -9.151  45.076  -2.525  1.00  0.00              
ATOM     49  CA  ASP    49      -6.582  45.800  -5.222  1.00  0.00              
ATOM     50  CA  GLU    50      -8.745  44.021  -7.849  1.00  0.00              
ATOM     51  CA  LEU    51     -11.821  45.957  -6.778  1.00  0.00              
ATOM     52  CA  LYS    52      -9.899  49.268  -6.773  1.00  0.00              
ATOM     53  CA  ALA    53      -8.699  48.538 -10.313  1.00  0.00              
ATOM     54  CA  ARG    54     -12.234  48.070 -11.711  1.00  0.00              
ATOM     55  CA  ASP    55     -12.955  51.024 -13.919  1.00  0.00              
ATOM     56  CA  GLY    56     -14.726  53.801 -11.944  1.00  0.00              
ATOM     57  CA  ASP    57     -18.047  53.651 -13.584  1.00  0.00              
ATOM     58  CA  GLN    58     -18.440  49.891 -13.241  1.00  0.00              
ATOM     59  CA  ARG    59     -17.183  49.208  -9.776  1.00  0.00              
ATOM     60  CA  THR    60     -19.314  51.923  -8.302  1.00  0.00              
ATOM     61  CA  ALA    61     -22.445  50.589 -10.078  1.00  0.00              
ATOM     62  CA  LEU    62     -21.732  47.058  -8.850  1.00  0.00              
ATOM     63  CA  LEU    63     -21.248  48.220  -5.262  1.00  0.00              
ATOM     64  CA  SER    64     -24.482  50.107  -5.394  1.00  0.00              
ATOM     65  CA  LEU    65     -26.377  47.155  -6.732  1.00  0.00              
ATOM     66  CA  PHE    66     -25.142  44.919  -3.863  1.00  0.00              
ATOM     67  CA  GLU    67     -26.715  47.344  -1.400  1.00  0.00              
ATOM     68  CA  TYR    68     -30.073  47.317  -3.096  1.00  0.00              
ATOM     69  CA  PRO    69     -32.870  45.687  -1.057  1.00  0.00              
ATOM     70  CA  ASN    70     -34.199  43.590  -3.880  1.00  0.00              
ATOM     71  CA  MET    71     -35.524  45.974  -6.474  1.00  0.00              
ATOM     72  CA  GLN    72     -34.389  43.858  -9.416  1.00  0.00              
ATOM     73  CA  VAL    73     -31.843  41.440  -8.053  1.00  0.00              
ATOM     74  CA  ARG    74     -29.137  39.663  -9.774  1.00  0.00              
ATOM     75  CA  LEU    75     -27.260  36.850  -8.123  1.00  0.00              
ATOM     76  CA  GLN    76     -24.252  35.914 -10.318  1.00  0.00              
ATOM     77  CA  ALA    77     -23.167  39.486 -11.197  1.00  0.00              
ATOM     78  CA  ALA    78     -23.153  40.617  -7.548  1.00  0.00              
ATOM     79  CA  LYS    79     -21.092  37.527  -6.580  1.00  0.00              
ATOM     80  CA  LEU    80     -18.641  38.016  -9.486  1.00  0.00              
ATOM     81  CA  THR    81     -18.091  41.654  -8.767  1.00  0.00              
ATOM     82  CA  LEU    82     -17.338  41.221  -5.100  1.00  0.00              
ATOM     83  CA  ALA    83     -15.219  43.486  -2.822  1.00  0.00              
ATOM     84  CA  VAL    84     -13.852  41.778   0.221  1.00  0.00              
ATOM     85  CA  ALA    85     -14.222  43.425   3.654  1.00  0.00              
ATOM     86  CA  PRO    86     -15.075  40.922   6.388  1.00  0.00              
ATOM     87  CA  VAL    87     -18.015  42.747   7.943  1.00  0.00              
ATOM     88  CA  LYS    88     -19.686  43.669   4.620  1.00  0.00              
ATOM     89  CA  ALA    89     -19.178  40.216   3.224  1.00  0.00              
ATOM     90  CA  ARG    90     -20.834  38.633   6.302  1.00  0.00              
ATOM     91  CA  GLU    91     -23.804  40.907   5.994  1.00  0.00              
ATOM     92  CA  GLN    92     -24.332  40.238   2.283  1.00  0.00              
ATOM     93  CA  LEU    93     -24.183  36.512   2.724  1.00  0.00              
ATOM     94  CA  GLU    94     -26.672  36.645   5.554  1.00  0.00              
ATOM     95  CA  ALA    95     -29.053  38.767   3.532  1.00  0.00              
ATOM     96  CA  ILE    96     -28.874  36.345   0.565  1.00  0.00              
ATOM     97  CA  VAL    97     -29.451  33.366   2.738  1.00  0.00              
ATOM     98  CA  SER    98     -32.495  35.042   4.408  1.00  0.00              
ATOM     99  CA  SER    99     -34.164  36.190   1.242  1.00  0.00              
ATOM    100  CA  LYS   100     -34.361  32.661  -0.269  1.00  0.00              
ATOM    101  CA  TRP   101     -31.625  32.796  -2.658  1.00  0.00              
ATOM    102  CA  PHE   102     -33.616  33.007  -5.840  1.00  0.00              
ATOM    103  CA  PRO   103     -32.972  36.513  -7.044  1.00  0.00              
ATOM    104  CA  GLN   104     -32.415  36.105 -10.820  1.00  0.00              
ATOM    105  CA  ALA   105     -34.289  38.888 -12.573  1.00  0.00              
ATOM    106  CA  GLY   106     -31.756  40.726 -14.613  1.00  0.00              
ATOM    107  CA  ASP   107     -29.410  38.154 -16.108  1.00  0.00              
ATOM    108  CA  ALA   108     -25.828  38.999 -15.106  1.00  0.00              
ATOM    109  CA  GLY   109     -24.418  39.584 -18.597  1.00  0.00              
ATOM    110  CA  MET   110     -27.356  41.895 -19.305  1.00  0.00              
ATOM    111  CA  CYS   111     -26.890  43.883 -16.113  1.00  0.00              
ATOM    112  CA  LEU   112     -23.204  44.543 -16.529  1.00  0.00              
ATOM    113  CA  ASP   113     -23.840  45.731 -20.099  1.00  0.00              
ATOM    114  CA  LEU   114     -26.675  48.033 -18.974  1.00  0.00              
ATOM    115  CA  LEU   115     -24.611  49.612 -16.198  1.00  0.00              
ATOM    116  CA  ASP   116     -21.662  50.273 -18.498  1.00  0.00              
ATOM    117  CA  ASP   117     -23.932  51.778 -21.214  1.00  0.00              
ATOM    118  CA  GLY   118     -25.734  54.176 -18.944  1.00  0.00              
ATOM    119  CA  THR   119     -29.103  52.432 -19.147  1.00  0.00              
ATOM    120  CA  PHE   120     -29.654  50.499 -15.977  1.00  0.00              
ATOM    121  CA  LYS   121     -32.723  50.801 -14.131  1.00  0.00              
ATOM    122  CA  PRO   122     -32.180  48.131 -10.932  1.00  0.00              
ATOM    123  CA  LYS   123     -32.751  50.366  -7.438  1.00  0.00              
TER                                                                             
END
