
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  123 (  123),  selected  121 , name T0382TS599_2
# Molecule2: number of CA atoms  121 (  929),  selected  121 , name T0382.pdb
# PARAMETERS: T0382TS599_2.T0382.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    57        48 - 104         4.97    22.19
  LONGEST_CONTINUOUS_SEGMENT:    57        49 - 105         4.94    22.45
  LCS_AVERAGE:     43.09

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    36        21 - 56          1.89    19.18
  LCS_AVERAGE:     19.73

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26        31 - 56          0.90    21.22
  LCS_AVERAGE:     13.20

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  121
LCS_GDT     K       3     K       3      5   27   50     2    4    5    7   12   21   22   26   29   32   36   38   40   43   48   52   54   61   63   65 
LCS_GDT     L       4     L       4      5   29   50     3    4    5    7   16   21   26   29   29   32   36   38   41   43   48   52   58   61   63   65 
LCS_GDT     D       5     D       5      5   29   50     3    4   14   20   24   25   27   29   29   32   36   38   41   43   48   52   58   61   63   65 
LCS_GDT     L       6     L       6     16   29   50     5    9   13   18   22   25   26   29   29   32   35   38   41   43   48   54   58   61   63   65 
LCS_GDT     H       7     H       7     20   29   50     5    5   13   19   22   25   27   29   29   32   36   38   41   43   48   52   54   57   62   65 
LCS_GDT     Q       8     Q       8     20   29   53     5   16   19   23   25   26   27   29   32   34   36   38   41   48   53   55   58   61   63   65 
LCS_GDT     M       9     M       9     20   29   53     7   17   21   23   25   26   27   30   32   34   36   40   45   49   53   55   58   61   63   65 
LCS_GDT     T      10     T      10     21   29   54     7   17   21   23   25   26   27   30   32   34   36   38   41   43   49   54   58   61   63   65 
LCS_GDT     T      11     T      11     21   29   54     7   17   21   23   25   26   27   30   32   34   36   38   40   42   44   47   54   57   60   62 
LCS_GDT     Q      12     Q      12     21   29   56     8   17   21   23   25   26   27   30   32   34   36   38   40   42   44   47   53   57   63   65 
LCS_GDT     D      13     D      13     21   29   56     8   17   21   23   25   26   27   30   32   34   36   38   43   48   53   55   58   61   63   65 
LCS_GDT     L      14     L      14     21   29   56     8   17   21   23   25   26   27   30   32   34   36   38   43   48   53   55   58   61   63   65 
LCS_GDT     V      15     V      15     21   29   56     9   17   21   23   25   26   27   30   32   34   36   38   40   43   49   54   58   61   63   65 
LCS_GDT     A      16     A      16     21   29   56     9   17   21   23   25   26   28   30   32   35   39   40   44   48   53   55   58   61   63   65 
LCS_GDT     L      17     L      17     21   29   56     9   17   21   23   25   26   28   30   34   39   42   46   48   50   53   55   58   61   63   65 
LCS_GDT     F      18     F      18     21   29   56     8   17   21   23   25   26   28   30   32   35   39   44   48   50   53   55   58   61   63   65 
LCS_GDT     A      19     A      19     21   29   56     9   17   21   23   25   26   28   30   33   37   41   44   48   50   53   55   58   61   63   65 
LCS_GDT     K      20     K      20     21   31   56     9   17   21   23   25   29   34   36   40   41   44   47   48   50   53   55   58   61   63   65 
LCS_GDT     V      21     V      21     21   36   56     9   17   21   23   25   32   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     T      22     T      22     21   36   56     9   17   21   23   25   26   30   36   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     V      23     V      23     21   36   56     9   17   21   23   28   32   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     E      24     E      24     21   36   56     6   17   25   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     Q      25     Q      25     21   36   56     6   15   21   28   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     D      26     D      26     21   36   56     9   17   25   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     D      27     D      27     21   36   56     9   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     A      28     A      28     21   36   56     8   21   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     L      29     L      29     21   36   56     8   15   21   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     L      30     L      30     21   36   56     8   15   23   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     G      31     G      31     26   36   56     8   15   25   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     N      32     N      32     26   36   56     8   13   19   28   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     Q      33     Q      33     26   36   56     5   21   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     I      34     I      34     26   36   56    15   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     S      35     S      35     26   36   56    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     R      36     R      36     26   36   56    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     F      37     F      37     26   36   56    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     N      38     N      38     26   36   56    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     R      39     R      39     26   36   56    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     L      40     L      40     26   36   56    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     F      41     F      41     26   36   56    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     G      42     G      42     26   36   56    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     V      43     V      43     26   36   56    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     M      44     M      44     26   36   56    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     A      45     A      45     26   36   56    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     E      46     E      46     26   36   56    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     I      47     I      47     26   36   56    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     A      48     A      48     26   36   57    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     D      49     D      49     26   36   57    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     E      50     E      50     26   36   57    19   23   26   29   33   34   36   38   40   41   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     L      51     L      51     26   36   57    19   23   26   29   33   34   36   38   40   41   45   47   50   51   53   55   58   61   63   65 
LCS_GDT     K      52     K      52     26   36   57    19   23   26   29   33   34   36   38   40   42   46   49   51   52   53   55   58   61   63   65 
LCS_GDT     A      53     A      53     26   36   57    19   23   26   29   33   34   36   38   40   42   47   50   51   52   53   55   58   61   63   65 
LCS_GDT     R      54     R      54     26   36   57    19   23   26   29   33   34   36   38   40   43   47   50   51   52   53   55   58   61   63   65 
LCS_GDT     D      55     D      55     26   36   57    11   23   26   29   33   34   36   38   40   43   47   50   51   52   53   55   58   61   63   65 
LCS_GDT     G      56     G      56     26   36   57    11   23   26   29   33   34   36   38   40   41   45   48   51   52   53   55   58   61   63   65 
LCS_GDT     D      57     D      57      4   35   57     3    4    4    7    8    8   11   19   26   35   45   47   48   50   53   55   58   61   63   65 
LCS_GDT     Q      58     Q      58      5   35   57     3    4    6   14   18   26   30   35   40   43   47   50   51   52   53   55   58   61   63   65 
LCS_GDT     R      59     R      59      5   13   57     4    5    6   16   19   26   31   38   40   43   47   50   51   52   53   55   58   61   63   65 
LCS_GDT     T      60     T      60      5   13   57     4    5    6   12   30   34   36   38   40   43   47   50   51   52   53   55   58   61   63   65 
LCS_GDT     A      61     A      61      6   13   57     4    5    6   14   18   26   30   35   40   43   47   50   51   52   53   55   58   61   63   65 
LCS_GDT     L      62     L      62      6   13   57     4    6   12   16   20   26   31   35   40   43   47   50   51   52   53   55   58   61   63   65 
LCS_GDT     L      63     L      63      8   13   57     4    5   13   17   23   34   35   38   40   43   47   50   51   52   53   55   58   61   63   65 
LCS_GDT     S      64     S      64      8   13   57     3    7   13   17   21   26   31   35   40   43   47   50   51   52   53   55   58   61   63   65 
LCS_GDT     L      65     L      65      8   13   57     6    7   13   17   21   26   31   35   40   43   47   50   51   52   53   55   57   61   63   65 
LCS_GDT     F      66     F      66      8   13   57     6   15   17   18   21   26   31   35   40   43   47   50   51   52   53   55   58   61   63   65 
LCS_GDT     E      67     E      67      8   13   57     6   10   16   17   19   24   31   35   40   43   47   50   51   52   53   55   58   61   63   65 
LCS_GDT     Y      68     Y      68      8   13   57     6    7   10   14   20   26   31   35   40   43   47   50   51   52   53   53   55   58   63   64 
LCS_GDT     P      69     P      69      8   13   57     6    7   10   13   17   22   26   34   37   42   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     N      70     N      70      8   13   57     6    7   10   14   18   26   31   35   40   43   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     M      71     M      71      3   10   57     3    3    5    5    5   11   16   25   38   42   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     Q      72     Q      72      3   10   57     3    3    6   11   14   18   23   34   38   42   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     V      73     V      73      3   10   57     3    3   10   14   19   26   31   35   40   43   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     R      74     R      74      9   10   57     4    9   11   13   13   19   25   35   40   43   47   50   51   52   53   53   55   56   57   59 
LCS_GDT     L      75     L      75      9   10   57    10   13   13   15   19   26   31   35   40   43   47   50   51   52   53   53   55   56   57   59 
LCS_GDT     Q      76     Q      76      9   10   57     8    9   11   13   19   23   29   35   40   43   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     A      77     A      77      9   10   57     8    9    9   13   13   15   23   35   39   43   47   50   51   52   53   53   55   56   57   59 
LCS_GDT     A      78     A      78      9   10   57     8    9   12   13   19   26   30   35   40   43   47   50   51   52   53   53   55   56   57   59 
LCS_GDT     K      79     K      79      9   10   57     8    9   12   16   20   26   31   35   40   43   47   50   51   52   53   53   55   56   57   59 
LCS_GDT     L      80     L      80      9   10   57     8    9   11   13   19   26   31   35   40   43   47   50   51   52   53   53   55   56   57   59 
LCS_GDT     T      81     T      81      9   10   57     8    9   11   14   19   26   30   35   40   43   47   50   51   52   53   53   55   60   63   65 
LCS_GDT     L      82     L      82      9   10   57     8    9   11   14   19   26   30   35   40   43   47   50   51   52   53   53   55   56   57   61 
LCS_GDT     A      83     A      83      9   20   57     3    3    4    9   16   22   29   35   40   43   47   50   51   52   53   53   55   56   63   65 
LCS_GDT     V      84     V      84     17   20   57     3    3    7   10   21   24   31   35   40   43   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     A      85     A      85     17   20   57    14   16   17   18   21   24   31   35   40   43   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     P      86     P      86     17   20   57    14   16   17   18   21   24   28   35   40   43   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     V      87     V      87     17   20   57    14   16   17   18   21   24   31   35   40   43   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     K      88     K      88     17   20   57    14   16   17   18   21   26   31   35   40   43   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     A      89     A      89     17   20   57    14   16   17   18   21   24   31   35   40   43   47   50   51   52   53   53   55   56   57   59 
LCS_GDT     R      90     R      90     17   20   57    14   16   17   18   21   24   31   35   40   43   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     E      91     E      91     17   20   57    14   16   17   18   21   26   31   35   40   43   47   50   51   52   53   53   55   56   57   59 
LCS_GDT     Q      92     Q      92     17   20   57    14   16   17   18   21   26   31   35   40   43   47   50   51   52   53   53   55   56   59   65 
LCS_GDT     L      93     L      93     17   20   57    14   16   17   18   21   26   31   35   40   43   47   50   51   52   53   53   55   56   57   59 
LCS_GDT     E      94     E      94     17   20   57    14   16   17   18   21   26   31   35   40   43   47   50   51   52   53   53   55   56   57   59 
LCS_GDT     A      95     A      95     17   20   57    14   16   17   18   21   26   31   35   40   43   47   50   51   52   53   53   55   56   57   59 
LCS_GDT     I      96     I      96     17   20   57    14   16   17   18   21   26   31   35   40   43   47   50   51   52   53   53   55   56   57   59 
LCS_GDT     V      97     V      97     17   20   57    14   16   17   18   21   26   31   35   40   43   47   50   51   52   53   53   55   56   57   59 
LCS_GDT     S      98     S      98     17   20   57    14   16   17   18   21   26   31   35   40   43   47   50   51   52   53   53   55   56   57   59 
LCS_GDT     S      99     S      99     17   20   57    12   16   17   18   21   26   31   35   40   43   47   50   51   52   53   53   55   56   57   59 
LCS_GDT     K     100     K     100     17   20   57     9   16   17   18   21   26   31   35   40   43   47   50   51   52   53   53   55   56   57   59 
LCS_GDT     W     101     W     101     17   20   57     3    4   15   18   19   23   28   35   40   43   47   50   51   52   53   53   55   56   57   59 
LCS_GDT     F     102     F     102      3   20   57     3    8   17   18   21   24   31   35   40   43   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     P     103     P     103      3   20   57     3    4    4    5   11   19   22   30   38   42   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     Q     104     Q     104      4    5   57     3    4    7   10   13   17   25   33   38   42   47   50   51   52   53   53   55   56   57   58 
LCS_GDT     A     105     A     105      4    5   57     3    4    5    5    9   11   12   13   16   23   26   35   41   45   50   53   55   56   57   58 
LCS_GDT     G     106     G     106      4    5   56     3    4    5    5    7   11   13   14   16   18   23   26   29   38   43   47   52   55   57   58 
LCS_GDT     D     107     D     107     14   17   56    10   13   13   14   16   18   19   19   19   24   32   36   42   46   51   53   55   56   57   58 
LCS_GDT     A     108     A     108     14   17   51    10   13   13   15   17   18   19   19   19   20   21   26   34   38   45   50   55   56   57   58 
LCS_GDT     G     109     G     109     14   17   24    10   13   13   15   17   18   19   19   19   20   21   24   25   28   30   33   36   43   48   52 
LCS_GDT     M     110     M     110     14   17   24    10   13   13   15   17   18   19   19   19   20   21   24   26   28   33   38   42   47   52   55 
LCS_GDT     C     111     C     111     14   17   24    10   13   13   15   17   18   19   19   19   20   21   24   26   29   34   38   45   48   52   55 
LCS_GDT     L     112     L     112     14   17   24    10   13   13   15   17   18   19   19   19   20   21   24   25   28   30   33   35   40   48   49 
LCS_GDT     D     113     D     113     14   17   24    10   13   13   15   17   18   19   19   19   20   21   24   25   28   30   31   33   36   40   45 
LCS_GDT     L     114     L     114     14   17   24    10   13   13   15   17   18   19   19   19   20   21   24   25   28   30   31   34   38   42   48 
LCS_GDT     L     115     L     115     14   17   24    10   13   13   15   17   18   19   19   19   20   21   25   25   28   30   35   39   43   46   50 
LCS_GDT     D     116     D     116     14   17   24    10   13   13   15   17   18   19   19   19   20   21   25   25   28   30   34   39   43   43   50 
LCS_GDT     D     117     D     117     14   17   24    10   13   13   15   17   18   19   19   19   20   21   24   25   28   30   31   34   43   43   50 
LCS_GDT     G     118     G     118     14   17   24     7   13   13   15   17   18   19   19   19   20   21   23   25   28   30   34   39   43   47   50 
LCS_GDT     T     119     T     119     14   17   24     3    6   10   15   17   18   19   19   19   20   21   23   24   26   28   31   34   38   42   46 
LCS_GDT     F     120     F     120     14   17   24     3    7   13   15   17   18   19   19   19   20   21   23   24   26   28   31   33   38   42   46 
LCS_GDT     K     121     K     121      4   17   24     3    4    4    5   17   18   19   19   20   21   22   24   25   27   28   31   33   36   39   44 
LCS_GDT     P     122     P     122      4   17   24     1    4    8   12   17   18   19   19   21   22   23   24   25   27   28   30   33   33   39   43 
LCS_GDT     K     123     K     123      3   17   24     2    5   10   15   17   18   19   20   23   28   30   31   33   35   38   41   43   43   45   47 
LCS_AVERAGE  LCS_A:  25.34  (  13.20   19.73   43.09 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     19     23     26     29     33     34     36     38     40     43     47     50     51     52     53     55     58     61     63     65 
GDT PERCENT_CA  15.70  19.01  21.49  23.97  27.27  28.10  29.75  31.40  33.06  35.54  38.84  41.32  42.15  42.98  43.80  45.45  47.93  50.41  52.07  53.72
GDT RMS_LOCAL    0.27   0.49   0.78   1.10   1.43   1.56   1.80   2.09   2.32   3.16   3.51   3.71   3.80   3.90   4.02   4.71   5.23   5.49   5.76   6.00
GDT RMS_ALL_CA  20.97  21.16  20.49  20.33  19.68  19.52  19.27  18.84  18.67  22.44  22.53  22.66  22.60  22.62  22.55  18.13  18.47  18.23  17.94  17.73

#      Molecule1      Molecule2       DISTANCE
LGA    K       3      K       3         14.990
LGA    L       4      L       4         14.738
LGA    D       5      D       5         15.114
LGA    L       6      L       6         13.996
LGA    H       7      H       7         16.913
LGA    Q       8      Q       8         15.160
LGA    M       9      M       9         12.884
LGA    T      10      T      10         14.882
LGA    T      11      T      11         16.146
LGA    Q      12      Q      12         14.785
LGA    D      13      D      13         11.223
LGA    L      14      L      14         11.253
LGA    V      15      V      15         11.721
LGA    A      16      A      16          9.743
LGA    L      17      L      17          7.165
LGA    F      18      F      18          7.853
LGA    A      19      A      19          7.451
LGA    K      20      K      20          5.130
LGA    V      21      V      21          3.668
LGA    T      22      T      22          4.701
LGA    V      23      V      23          3.961
LGA    E      24      E      24          1.838
LGA    Q      25      Q      25          1.356
LGA    D      26      D      26          1.187
LGA    D      27      D      27          1.917
LGA    A      28      A      28          1.076
LGA    L      29      L      29          1.656
LGA    L      30      L      30          2.586
LGA    G      31      G      31          3.225
LGA    N      32      N      32          3.082
LGA    Q      33      Q      33          2.874
LGA    I      34      I      34          3.670
LGA    S      35      S      35          2.512
LGA    R      36      R      36          2.213
LGA    F      37      F      37          2.767
LGA    N      38      N      38          2.511
LGA    R      39      R      39          1.671
LGA    L      40      L      40          1.835
LGA    F      41      F      41          2.065
LGA    G      42      G      42          1.690
LGA    V      43      V      43          1.231
LGA    M      44      M      44          1.722
LGA    A      45      A      45          1.903
LGA    E      46      E      46          1.208
LGA    I      47      I      47          1.558
LGA    A      48      A      48          2.160
LGA    D      49      D      49          1.513
LGA    E      50      E      50          1.553
LGA    L      51      L      51          2.475
LGA    K      52      K      52          2.387
LGA    A      53      A      53          1.917
LGA    R      54      R      54          2.739
LGA    D      55      D      55          2.858
LGA    G      56      G      56          3.134
LGA    D      57      D      57          5.426
LGA    Q      58      Q      58          4.522
LGA    R      59      R      59          3.912
LGA    T      60      T      60          2.703
LGA    A      61      A      61          6.035
LGA    L      62      L      62          6.279
LGA    L      63      L      63          2.886
LGA    S      64      S      64          6.251
LGA    L      65      L      65          9.102
LGA    F      66      F      66          6.883
LGA    E      67      E      67          6.264
LGA    Y      68      Y      68         11.244
LGA    P      69      P      69         13.492
LGA    N      70      N      70         18.481
LGA    M      71      M      71         23.025
LGA    Q      72      Q      72         25.652
LGA    V      73      V      73         19.339
LGA    R      74      R      74         18.761
LGA    L      75      L      75         21.006
LGA    Q      76      Q      76         20.515
LGA    A      77      A      77         16.092
LGA    A      78      A      78         15.297
LGA    K      79      K      79         18.257
LGA    L      80      L      80         16.228
LGA    T      81      T      81         12.615
LGA    L      82      L      82         14.980
LGA    A      83      A      83         12.847
LGA    V      84      V      84         14.730
LGA    A      85      A      85         15.127
LGA    P      86      P      86         18.821
LGA    V      87      V      87         18.107
LGA    K      88      K      88         12.677
LGA    A      89      A      89         13.768
LGA    R      90      R      90         18.048
LGA    E      91      E      91         14.744
LGA    Q      92      Q      92         12.517
LGA    L      93      L      93         17.856
LGA    E      94      E      94         19.533
LGA    A      95      A      95         15.835
LGA    I      96      I      96         19.038
LGA    V      97      V      97         24.067
LGA    S      98      S      98         22.430
LGA    S      99      S      99         21.751
LGA    K     100      K     100         28.000
LGA    W     101      W     101         26.258
LGA    F     102      F     102         31.886
LGA    P     103      P     103         31.842
LGA    Q     104      Q     104         31.347
LGA    A     105      A     105         34.102
LGA    G     106      G     106         37.150
LGA    D     107      D     107         35.985
LGA    A     108      A     108         31.488
LGA    G     109      G     109         37.374
LGA    M     110      M     110         38.891
LGA    C     111      C     111         31.874
LGA    L     112      L     112         31.167
LGA    D     113      D     113         37.506
LGA    L     114      L     114         35.534
LGA    L     115      L     115         28.797
LGA    D     116      D     116         32.117
LGA    D     117      D     117         36.623
LGA    G     118      G     118         31.796
LGA    T     119      T     119         36.234
LGA    F     120      F     120         32.593
LGA    K     121      K     121         30.183
LGA    P     122      P     122         26.647
LGA    K     123      K     123         24.355

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  123  121    4.0     38    2.09    29.959    28.206     1.731

LGA_LOCAL      RMSD =  2.095  Number of atoms =   38  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 18.023  Number of atoms =  121 
Std_ALL_ATOMS  RMSD = 13.357  (standard rmsd on all 121 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.562964 * X  +  -0.413268 * Y  +  -0.715738 * Z  + -19.606672
  Y_new =   0.442377 * X  +   0.580834 * Y  +  -0.683326 * Z  +  39.874229
  Z_new =   0.698122 * X  +  -0.701314 * Y  +  -0.144168 * Z  +  -3.789446 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.773541    1.368052  [ DEG:  -101.6164     78.3836 ]
  Theta =  -0.772771   -2.368822  [ DEG:   -44.2765   -135.7235 ]
  Phi   =   2.475570   -0.666022  [ DEG:   141.8397    -38.1603 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0382TS599_2                                  
REMARK     2: T0382.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0382TS599_2.T0382.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  123  121   4.0   38   2.09  28.206    13.36
REMARK  ---------------------------------------------------------- 
MOLECULE T0382TS599_2
PFRMAT TS                                                                       
TARGET T0382                                                                    
MODEL  2                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1     -13.696  38.036  -8.545  1.00  0.00              
ATOM      2  CA  SER     2     -10.688  35.380  -9.818  1.00  0.00              
ATOM      3  CA  LYS     3     -11.418  31.415 -11.008  1.00  0.00              
ATOM      4  CA  LEU     4     -15.265  30.637 -10.354  1.00  0.00              
ATOM      5  CA  ASP     5     -16.956  31.210 -13.678  1.00  0.00              
ATOM      6  CA  LEU     6     -20.110  33.323 -13.116  1.00  0.00              
ATOM      7  CA  HIS     7     -22.217  31.733 -15.872  1.00  0.00              
ATOM      8  CA  GLN     8     -21.846  28.259 -14.297  1.00  0.00              
ATOM      9  CA  MET     9     -22.407  29.143 -10.691  1.00  0.00              
ATOM     10  CA  THR    10     -25.476  27.786  -8.940  1.00  0.00              
ATOM     11  CA  THR    11     -26.979  29.703  -6.047  1.00  0.00              
ATOM     12  CA  GLN    12     -25.999  26.991  -3.632  1.00  0.00              
ATOM     13  CA  ASP    13     -22.416  27.057  -4.743  1.00  0.00              
ATOM     14  CA  LEU    14     -22.153  30.791  -4.469  1.00  0.00              
ATOM     15  CA  VAL    15     -23.793  30.887  -1.093  1.00  0.00              
ATOM     16  CA  ALA    16     -21.545  28.234   0.374  1.00  0.00              
ATOM     17  CA  LEU    17     -18.416  29.954  -0.925  1.00  0.00              
ATOM     18  CA  PHE    18     -19.431  33.306   0.449  1.00  0.00              
ATOM     19  CA  ALA    19     -20.262  31.809   3.849  1.00  0.00              
ATOM     20  CA  LYS    20     -16.936  30.086   4.037  1.00  0.00              
ATOM     21  CA  VAL    21     -15.033  33.300   3.305  1.00  0.00              
ATOM     22  CA  THR    22     -16.962  35.237   5.964  1.00  0.00              
ATOM     23  CA  VAL    23     -16.307  32.465   8.456  1.00  0.00              
ATOM     24  CA  GLU    24     -12.577  32.182   7.801  1.00  0.00              
ATOM     25  CA  GLN    25     -11.912  35.874   8.219  1.00  0.00              
ATOM     26  CA  ASP    26     -13.777  36.207  11.445  1.00  0.00              
ATOM     27  CA  ASP    27     -12.268  33.229  13.202  1.00  0.00              
ATOM     28  CA  ALA    28      -8.669  33.926  12.324  1.00  0.00              
ATOM     29  CA  LEU    29      -8.726  37.520  13.404  1.00  0.00              
ATOM     30  CA  LEU    30     -10.363  36.737  16.788  1.00  0.00              
ATOM     31  CA  GLY    31      -7.795  34.081  17.654  1.00  0.00              
ATOM     32  CA  ASN    32      -4.837  36.252  16.680  1.00  0.00              
ATOM     33  CA  GLN    33      -2.940  33.762  14.610  1.00  0.00              
ATOM     34  CA  ILE    34       0.088  35.659  13.335  1.00  0.00              
ATOM     35  CA  SER    35       1.007  33.468  10.330  1.00  0.00              
ATOM     36  CA  ARG    36      -2.449  32.533   9.231  1.00  0.00              
ATOM     37  CA  PHE    37      -3.532  36.168   9.871  1.00  0.00              
ATOM     38  CA  ASN    38      -0.897  37.482   7.541  1.00  0.00              
ATOM     39  CA  ARG    39      -2.078  35.010   4.880  1.00  0.00              
ATOM     40  CA  LEU    40      -5.705  36.112   5.401  1.00  0.00              
ATOM     41  CA  PHE    41      -4.658  39.770   5.122  1.00  0.00              
ATOM     42  CA  GLY    42      -2.730  39.150   1.892  1.00  0.00              
ATOM     43  CA  VAL    43      -5.791  37.556   0.272  1.00  0.00              
ATOM     44  CA  MET    44      -7.994  40.475   1.390  1.00  0.00              
ATOM     45  CA  ALA    45      -5.392  42.937   0.076  1.00  0.00              
ATOM     46  CA  GLU    46      -5.355  41.218  -3.342  1.00  0.00              
ATOM     47  CA  ILE    47      -9.195  41.370  -3.455  1.00  0.00              
ATOM     48  CA  ALA    48      -9.154  45.073  -2.519  1.00  0.00              
ATOM     49  CA  ASP    49      -6.592  45.799  -5.215  1.00  0.00              
ATOM     50  CA  GLU    50      -8.763  44.026  -7.843  1.00  0.00              
ATOM     51  CA  LEU    51     -11.839  45.951  -6.773  1.00  0.00              
ATOM     52  CA  LYS    52      -9.915  49.263  -6.771  1.00  0.00              
ATOM     53  CA  ALA    53      -8.703  48.538 -10.306  1.00  0.00              
ATOM     54  CA  ARG    54     -12.232  48.065 -11.706  1.00  0.00              
ATOM     55  CA  ASP    55     -12.952  51.031 -13.907  1.00  0.00              
ATOM     56  CA  GLY    56     -14.713  53.800 -11.965  1.00  0.00              
ATOM     57  CA  ASP    57     -18.028  53.681 -13.588  1.00  0.00              
ATOM     58  CA  GLN    58     -18.432  49.874 -13.257  1.00  0.00              
ATOM     59  CA  ARG    59     -17.198  49.201  -9.780  1.00  0.00              
ATOM     60  CA  THR    60     -19.322  51.941  -8.307  1.00  0.00              
ATOM     61  CA  ALA    61     -22.444  50.596 -10.117  1.00  0.00              
ATOM     62  CA  LEU    62     -21.737  47.088  -8.859  1.00  0.00              
ATOM     63  CA  LEU    63     -21.274  48.215  -5.268  1.00  0.00              
ATOM     64  CA  SER    64     -24.499  50.112  -5.455  1.00  0.00              
ATOM     65  CA  LEU    65     -26.385  47.153  -6.808  1.00  0.00              
ATOM     66  CA  PHE    66     -25.204  44.907  -3.889  1.00  0.00              
ATOM     67  CA  GLU    67     -26.654  47.370  -1.393  1.00  0.00              
ATOM     68  CA  TYR    68     -30.055  47.260  -2.967  1.00  0.00              
ATOM     69  CA  PRO    69     -32.876  45.775  -0.966  1.00  0.00              
ATOM     70  CA  ASN    70     -34.269  43.641  -3.773  1.00  0.00              
ATOM     71  CA  MET    71     -35.478  46.112  -6.403  1.00  0.00              
ATOM     72  CA  GLN    72     -34.332  43.876  -9.345  1.00  0.00              
ATOM     73  CA  VAL    73     -31.886  41.441  -7.873  1.00  0.00              
ATOM     74  CA  ARG    74     -29.143  39.709  -9.694  1.00  0.00              
ATOM     75  CA  LEU    75     -27.262  36.884  -8.044  1.00  0.00              
ATOM     76  CA  GLN    76     -24.304  35.962 -10.298  1.00  0.00              
ATOM     77  CA  ALA    77     -23.192  39.469 -11.167  1.00  0.00              
ATOM     78  CA  ALA    78     -23.159  40.619  -7.554  1.00  0.00              
ATOM     79  CA  LYS    79     -21.100  37.543  -6.579  1.00  0.00              
ATOM     80  CA  LEU    80     -18.703  38.014  -9.475  1.00  0.00              
ATOM     81  CA  THR    81     -18.123  41.667  -8.741  1.00  0.00              
ATOM     82  CA  LEU    82     -17.352  41.240  -5.086  1.00  0.00              
ATOM     83  CA  ALA    83     -15.218  43.499  -2.802  1.00  0.00              
ATOM     84  CA  VAL    84     -13.840  41.777   0.230  1.00  0.00              
ATOM     85  CA  ALA    85     -14.199  43.434   3.670  1.00  0.00              
ATOM     86  CA  PRO    86     -15.048  40.920   6.408  1.00  0.00              
ATOM     87  CA  VAL    87     -17.994  42.741   7.951  1.00  0.00              
ATOM     88  CA  LYS    88     -19.664  43.679   4.664  1.00  0.00              
ATOM     89  CA  ALA    89     -19.155  40.241   3.244  1.00  0.00              
ATOM     90  CA  ARG    90     -20.833  38.616   6.293  1.00  0.00              
ATOM     91  CA  GLU    91     -23.781  40.957   6.053  1.00  0.00              
ATOM     92  CA  GLN    92     -24.326  40.271   2.298  1.00  0.00              
ATOM     93  CA  LEU    93     -24.145  36.531   2.756  1.00  0.00              
ATOM     94  CA  GLU    94     -26.668  36.702   5.564  1.00  0.00              
ATOM     95  CA  ALA    95     -29.031  38.787   3.551  1.00  0.00              
ATOM     96  CA  ILE    96     -28.863  36.384   0.601  1.00  0.00              
ATOM     97  CA  VAL    97     -29.481  33.424   2.779  1.00  0.00              
ATOM     98  CA  SER    98     -32.465  35.073   4.418  1.00  0.00              
ATOM     99  CA  SER    99     -34.148  36.224   1.268  1.00  0.00              
ATOM    100  CA  LYS   100     -34.376  32.694  -0.204  1.00  0.00              
ATOM    101  CA  TRP   101     -31.650  32.766  -2.630  1.00  0.00              
ATOM    102  CA  PHE   102     -33.629  33.027  -5.798  1.00  0.00              
ATOM    103  CA  PRO   103     -32.970  36.543  -6.960  1.00  0.00              
ATOM    104  CA  GLN   104     -32.417  36.234 -10.731  1.00  0.00              
ATOM    105  CA  ALA   105     -34.308  38.994 -12.488  1.00  0.00              
ATOM    106  CA  GLY   106     -31.754  40.809 -14.498  1.00  0.00              
ATOM    107  CA  ASP   107     -29.499  38.244 -16.038  1.00  0.00              
ATOM    108  CA  ALA   108     -25.882  38.996 -15.043  1.00  0.00              
ATOM    109  CA  GLY   109     -24.460  39.565 -18.590  1.00  0.00              
ATOM    110  CA  MET   110     -27.397  41.922 -19.252  1.00  0.00              
ATOM    111  CA  CYS   111     -26.870  43.921 -16.046  1.00  0.00              
ATOM    112  CA  LEU   112     -23.162  44.541 -16.535  1.00  0.00              
ATOM    113  CA  ASP   113     -23.843  45.719 -20.117  1.00  0.00              
ATOM    114  CA  LEU   114     -26.656  48.053 -18.982  1.00  0.00              
ATOM    115  CA  LEU   115     -24.611  49.634 -16.198  1.00  0.00              
ATOM    116  CA  ASP   116     -21.660  50.269 -18.513  1.00  0.00              
ATOM    117  CA  ASP   117     -23.895  51.757 -21.253  1.00  0.00              
ATOM    118  CA  GLY   118     -25.725  54.170 -18.992  1.00  0.00              
ATOM    119  CA  THR   119     -29.088  52.388 -19.236  1.00  0.00              
ATOM    120  CA  PHE   120     -29.646  50.455 -16.057  1.00  0.00              
ATOM    121  CA  LYS   121     -32.683  50.688 -14.158  1.00  0.00              
ATOM    122  CA  PRO   122     -32.144  47.828 -11.118  1.00  0.00              
ATOM    123  CA  LYS   123     -32.314  49.737  -7.792  1.00  0.00              
TER                                                                             
END
