
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  123 (  123),  selected  121 , name T0382TS599_3
# Molecule2: number of CA atoms  121 (  929),  selected  121 , name T0382.pdb
# PARAMETERS: T0382TS599_3.T0382.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    63        12 - 74          4.95    18.15
  LONGEST_CONTINUOUS_SEGMENT:    63        13 - 75          4.99    17.97
  LCS_AVERAGE:     48.43

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    40        21 - 60          1.99    14.41
  LONGEST_CONTINUOUS_SEGMENT:    40        22 - 61          1.97    14.63
  LONGEST_CONTINUOUS_SEGMENT:    40        23 - 62          1.98    14.97
  LCS_AVERAGE:     22.57

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    32        25 - 56          0.93    14.37
  LCS_AVERAGE:     15.61

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  121
LCS_GDT     K       3     K       3      4    6   57     0    4    4    6   10   17   22   24   29   31   37   44   46   54   63   68   70   71   73   82 
LCS_GDT     L       4     L       4      4   29   59     3    4    4    6    8   10   27   29   32   35   40   43   44   54   63   68   71   76   77   82 
LCS_GDT     D       5     D       5      4   29   59     3    4   15   23   26   29   30   32   34   38   40   43   48   54   63   68   71   76   77   82 
LCS_GDT     L       6     L       6     21   29   60     5   12   15   22   26   28   30   31   34   36   40   43   44   54   63   68   71   76   77   82 
LCS_GDT     H       7     H       7     21   29   60     5    6   17   23   26   29   30   32   34   38   40   43   44   47   63   68   71   76   77   82 
LCS_GDT     Q       8     Q       8     22   29   60     8   17   20   24   26   29   30   33   36   38   46   53   56   60   63   68   70   71   73   82 
LCS_GDT     M       9     M       9     22   29   60     7   17   20   24   26   29   30   34   36   45   48   53   56   60   63   68   70   71   73   82 
LCS_GDT     T      10     T      10     22   29   60     8   17   21   24   26   29   30   34   36   38   47   53   56   60   63   68   70   71   73   80 
LCS_GDT     T      11     T      11     22   29   60     8   17   21   24   26   29   30   34   36   38   40   42   48   54   60   62   70   71   73   80 
LCS_GDT     Q      12     Q      12     22   29   63     8   17   21   24   26   29   31   34   36   38   40   45   53   57   60   62   64   71   73   82 
LCS_GDT     D      13     D      13     22   29   63     9   17   21   24   26   29   31   34   41   46   50   53   56   60   62   68   70   75   83   87 
LCS_GDT     L      14     L      14     22   29   63     8   17   21   24   26   29   31   34   36   38   48   53   56   60   63   68   71   81   89   91 
LCS_GDT     V      15     V      15     22   29   63     8   17   21   24   26   29   31   34   36   38   40   49   55   57   60   62   70   81   89   92 
LCS_GDT     A      16     A      16     22   29   63     9   17   21   24   26   29   31   34   44   46   50   53   56   60   62   68   74   82   89   92 
LCS_GDT     L      17     L      17     22   29   63     9   17   21   24   26   29   33   41   44   46   50   53   56   62   68   77   82   86   89   92 
LCS_GDT     F      18     F      18     22   29   63     9   17   21   24   26   29   31   34   41   46   50   53   61   68   76   82   86   89   89   92 
LCS_GDT     A      19     A      19     22   38   63     9   17   21   24   26   29   31   35   44   46   50   53   58   63   74   82   86   89   89   92 
LCS_GDT     K      20     K      20     22   39   63     9   17   21   24   26   37   38   41   44   46   50   53   58   68   75   82   86   89   89   92 
LCS_GDT     V      21     V      21     22   40   63     9   17   21   24   26   36   38   41   44   46   55   63   70   76   82   83   86   89   89   92 
LCS_GDT     T      22     T      22     22   40   63     9   17   21   24   26   29   31   41   44   51   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     V      23     V      23     22   40   63     9   17   21   24   26   37   38   41   44   47   55   64   70   76   82   83   86   89   89   92 
LCS_GDT     E      24     E      24     31   40   63     8   17   24   34   35   37   38   41   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     Q      25     Q      25     32   40   63    10   16   21   34   35   37   38   41   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     D      26     D      26     32   40   63     8   17   30   34   34   37   38   41   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     D      27     D      27     32   40   63     7   16   31   34   35   37   38   41   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     A      28     A      28     32   40   63     7   27   31   34   35   37   38   41   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     L      29     L      29     32   40   63     7   27   31   34   35   37   38   41   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     L      30     L      30     32   40   63    14   27   31   34   35   37   38   41   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     G      31     G      31     32   40   63    11   27   31   34   35   37   38   41   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     N      32     N      32     32   40   63    18   27   31   34   35   37   38   41   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     Q      33     Q      33     32   40   63    11   27   31   34   35   37   38   41   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     I      34     I      34     32   40   63     7   27   31   34   35   37   38   41   44   46   50   53   59   68   82   83   86   89   89   92 
LCS_GDT     S      35     S      35     32   40   63    14   27   31   34   35   37   38   41   44   46   50   53   56   65   73   82   86   89   89   92 
LCS_GDT     R      36     R      36     32   40   63    18   27   31   34   35   37   38   41   44   51   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     F      37     F      37     32   40   63    18   27   31   34   35   37   38   41   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     N      38     N      38     32   40   63    18   27   31   34   35   37   38   41   44   46   50   53   59   67   82   83   86   89   89   92 
LCS_GDT     R      39     R      39     32   40   63    18   27   31   34   35   37   38   41   44   46   51   56   70   76   82   83   86   89   89   92 
LCS_GDT     L      40     L      40     32   40   63    18   27   31   34   35   37   38   41   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     F      41     F      41     32   40   63    18   27   31   34   35   37   38   41   44   46   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     G      42     G      42     32   40   63    18   27   31   34   35   37   38   41   44   46   50   53   57   76   82   83   86   89   89   92 
LCS_GDT     V      43     V      43     32   40   63    18   27   31   34   35   37   38   41   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     M      44     M      44     32   40   63    18   27   31   34   35   37   38   41   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     A      45     A      45     32   40   63    18   27   31   34   35   37   38   41   44   46   50   53   57   76   82   83   86   89   89   92 
LCS_GDT     E      46     E      46     32   40   63    18   27   31   34   35   37   38   41   44   46   57   63   70   76   82   83   86   89   89   92 
LCS_GDT     I      47     I      47     32   40   63    18   27   31   34   35   37   38   41   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     A      48     A      48     32   40   63    18   27   31   34   35   37   38   41   44   46   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     D      49     D      49     32   40   63    18   27   31   34   35   37   38   41   44   46   50   53   65   76   82   83   86   89   89   92 
LCS_GDT     E      50     E      50     32   40   63    18   27   31   34   35   37   38   41   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     L      51     L      51     32   40   63    18   27   31   34   35   37   38   41   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     K      52     K      52     32   40   63    18   27   31   34   35   37   38   41   44   46   50   59   68   76   82   83   86   89   89   92 
LCS_GDT     A      53     A      53     32   40   63    12   27   31   34   35   37   38   41   44   46   57   63   70   76   82   83   86   89   89   92 
LCS_GDT     R      54     R      54     32   40   63    12   27   31   34   35   37   38   41   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     D      55     D      55     32   40   63     6   22   31   34   35   37   38   41   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     G      56     G      56     32   40   63    11   27   31   34   35   37   38   41   44   46   51   59   68   72   82   83   86   89   89   92 
LCS_GDT     D      57     D      57      4   40   63     3    4    5   13   21   32   38   41   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     Q      58     Q      58      5   40   63     3    5   31   34   35   37   38   41   44   51   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     R      59     R      59      5   40   63     4    5    8   10   15   19   36   40   43   46   50   53   62   68   75   80   84   87   89   92 
LCS_GDT     T      60     T      60      5   40   63     4    5   24   30   35   36   38   40   44   46   50   53   56   60   72   77   84   86   89   91 
LCS_GDT     A      61     A      61      6   40   63     5   20   26   30   35   36   38   40   44   46   50   53   56   60   72   77   84   86   89   91 
LCS_GDT     L      62     L      62     11   40   63     4    5   11   13   24   34   37   40   42   44   48   53   56   60   64   77   84   86   89   91 
LCS_GDT     L      63     L      63     11   17   63     4    6   11   13   15   18   33   38   42   43   48   53   56   60   63   68   70   71   73   74 
LCS_GDT     S      64     S      64     11   17   63     3    9   11   13   18   28   33   38   42   43   46   53   56   60   63   68   70   71   73   74 
LCS_GDT     L      65     L      65     11   17   63     3    9   11   13   15   22   34   39   42   43   48   53   56   60   63   68   70   71   73   74 
LCS_GDT     F      66     F      66     11   17   63     4    9   11   13   15   18   22   25   29   31   38   45   50   54   63   68   70   71   73   74 
LCS_GDT     E      67     E      67     11   17   63     5    9   11   13   15   18   22   24   25   30   38   44   49   54   63   65   70   71   71   74 
LCS_GDT     Y      68     Y      68     11   17   63     5    9   11   13   15   18   30   34   37   40   45   47   56   58   63   68   70   71   73   74 
LCS_GDT     P      69     P      69     11   17   63     5    9   11   13   15   18   22   27   30   35   38   46   49   54   63   67   70   71   72   74 
LCS_GDT     N      70     N      70     11   17   63     5    9   11   13   15   22   33   37   39   43   48   53   56   60   63   68   70   71   73   74 
LCS_GDT     M      71     M      71     11   17   63     5    9   11   13   15   18   22   25   29   36   45   48   56   58   63   68   70   71   73   74 
LCS_GDT     Q      72     Q      72     11   17   63     4    9   11   13   15   18   22   30   39   42   48   53   56   60   63   71   79   84   89   91 
LCS_GDT     V      73     V      73     10   17   63     4    8   11   16   32   36   38   40   44   46   50   53   57   63   72   78   84   87   89   92 
LCS_GDT     R      74     R      74      9   11   63     9    9    9    9   10   14   31   36   41   46   50   53   56   62   72   77   84   87   89   92 
LCS_GDT     L      75     L      75      9   11   63     9    9    9   12   18   24   32   38   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     Q      76     Q      76      9   11   62     9   15   21   24   26   29   30   36   41   46   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     A      77     A      77      9   11   62     9    9   15   20   26   37   38   41   44   46   50   53   57   67   75   80   84   87   89   92 
LCS_GDT     A      78     A      78      9   11   60     9    9    9    9   15   23   36   38   42   45   51   59   68   76   82   83   86   89   89   92 
LCS_GDT     K      79     K      79      9   11   52     9    9   10   13   19   26   31   40   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     L      80     L      80      9   11   52     9    9   21   24   26   29   31   36   41   51   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     T      81     T      81      9   11   52     9   11   15   19   25   32   38   41   44   46   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     L      82     L      82      9   11   52     9    9    9    9   16   19   29   40   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     A      83     A      83      4   20   52     3    3    9   16   18   25   31   40   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     V      84     V      84      3   20   52     3    3    3    7   13   20   25   31   37   44   55   63   68   75   82   83   86   89   89   92 
LCS_GDT     A      85     A      85     17   20   52    14   16   17   18   20   25   31   36   40   51   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     P      86     P      86     17   20   52    14   16   17   18   20   25   31   36   42   47   56   64   70   76   82   83   86   89   89   92 
LCS_GDT     V      87     V      87     17   20   52    14   16   17   18   23   27   31   37   43   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     K      88     K      88     17   20   52    14   16   17   18   20   25   31   37   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     A      89     A      89     17   20   52    14   16   17   18   20   27   31   37   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     R      90     R      90     17   20   52    14   16   17   20   26   31   34   37   43   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     E      91     E      91     17   20   52    14   16   17   20   26   31   34   40   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     Q      92     Q      92     17   20   52    14   16   17   19   24   31   34   40   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     L      93     L      93     17   20   52    14   16   17   20   26   31   34   40   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     E      94     E      94     17   20   52    14   16   17   18   24   31   34   40   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     A      95     A      95     17   20   52    14   16   17   18   21   28   34   40   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     I      96     I      96     17   20   52    14   16   17   18   21   28   34   40   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     V      97     V      97     17   20   52    14   16   17   18   20   25   31   40   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     S      98     S      98     17   20   52    14   16   17   18   20   25   31   40   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     S      99     S      99     17   20   52    14   16   17   18   20   26   31   40   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     K     100     K     100     17   20   52     4   16   17   18   20   25   30   33   42   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     W     101     W     101     17   20   52     3    8   17   18   20   26   31   40   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     F     102     F     102      5   20   52     3    4   10   13   19   26   31   40   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     P     103     P     103      5   20   52     3    4    5    6    9   16   26   31   43   50   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     Q     104     Q     104     15   20   52     6   12   16   20   26   31   34   40   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     A     105     A     105     16   20   52     3   10   16   20   26   29   33   37   43   51   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     G     106     G     106     16   20   52     3    9   16   20   26   31   34   37   43   51   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     D     107     D     107     16   20   52     5   13   17   20   26   31   34   40   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     A     108     A     108     16   20   52     9   13   17   20   26   31   34   40   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     G     109     G     109     16   20   52    10   13   17   20   26   31   34   40   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     M     110     M     110     16   20   52    10   13   17   20   26   31   34   40   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     C     111     C     111     16   20   52    10   13   17   20   26   31   34   40   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     L     112     L     112     16   20   52    10   13   17   20   26   31   34   40   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     D     113     D     113     16   20   52    10   13   17   20   26   31   34   40   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     L     114     L     114     16   20   52    10   13   17   20   26   31   34   40   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     L     115     L     115     16   20   52    10   13   17   20   26   31   34   40   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     D     116     D     116     16   20   52    10   13   17   20   26   31   34   40   45   52   57   64   70   76   82   83   86   89   89   92 
LCS_GDT     D     117     D     117     16   20   52    10   13   17   20   26   31   34   40   45   52   57   63   70   76   82   83   86   89   89   92 
LCS_GDT     G     118     G     118     16   20   52     9   13   17   20   26   31   34   40   43   52   56   63   70   76   82   83   86   89   89   92 
LCS_GDT     T     119     T     119     16   20   52     3    5    7   17   26   31   34   39   43   48   56   62   70   74   82   83   86   89   89   92 
LCS_GDT     F     120     F     120     16   20   52     6   13   16   20   26   31   34   39   43   47   55   60   66   73   78   83   85   89   89   92 
LCS_GDT     K     121     K     121      4   20   52     3    4    5   19   26   31   34   39   43   48   55   61   70   74   82   83   86   89   89   92 
LCS_GDT     P     122     P     122      4   20   52     3    4    4    5   22   31   34   39   43   48   56   62   70   76   82   83   86   89   89   92 
LCS_GDT     K     123     K     123      3   20   52     1    7   17   20   26   31   34   39   43   47   55   60   66   71   77   82   85   89   89   92 
LCS_AVERAGE  LCS_A:  28.87  (  15.61   22.57   48.43 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     18     27     31     34     35     37     38     41     45     52     57     64     70     76     82     83     86     89     89     92 
GDT PERCENT_CA  14.88  22.31  25.62  28.10  28.93  30.58  31.40  33.88  37.19  42.98  47.11  52.89  57.85  62.81  67.77  68.60  71.07  73.55  73.55  76.03
GDT RMS_LOCAL    0.26   0.58   0.78   1.03   1.25   1.50   1.64   2.08   3.29   3.55   3.80   4.10   4.34   4.62   4.87   4.92   5.11   5.29   5.29   5.55
GDT RMS_ALL_CA  15.78  14.96  14.58  14.33  15.25  14.22  14.31  13.57  10.19  10.15  10.18   9.96  10.07  10.08  10.09  10.10  10.05  10.06  10.06  10.03

#      Molecule1      Molecule2       DISTANCE
LGA    K       3      K       3         14.832
LGA    L       4      L       4         14.216
LGA    D       5      D       5         13.987
LGA    L       6      L       6         13.212
LGA    H       7      H       7         14.468
LGA    Q       8      Q       8         13.227
LGA    M       9      M       9         11.121
LGA    T      10      T      10         10.974
LGA    T      11      T      11         11.878
LGA    Q      12      Q      12          9.455
LGA    D      13      D      13          7.273
LGA    L      14      L      14          8.522
LGA    V      15      V      15          8.070
LGA    A      16      A      16          5.680
LGA    L      17      L      17          5.142
LGA    F      18      F      18          5.826
LGA    A      19      A      19          4.805
LGA    K      20      K      20          3.219
LGA    V      21      V      21          3.737
LGA    T      22      T      22          3.945
LGA    V      23      V      23          2.492
LGA    E      24      E      24          1.660
LGA    Q      25      Q      25          1.745
LGA    D      26      D      26          0.985
LGA    D      27      D      27          0.612
LGA    A      28      A      28          0.738
LGA    L      29      L      29          0.993
LGA    L      30      L      30          0.824
LGA    G      31      G      31          0.626
LGA    N      32      N      32          0.675
LGA    Q      33      Q      33          0.838
LGA    I      34      I      34          1.476
LGA    S      35      S      35          0.884
LGA    R      36      R      36          0.078
LGA    F      37      F      37          0.920
LGA    N      38      N      38          1.112
LGA    R      39      R      39          0.522
LGA    L      40      L      40          1.129
LGA    F      41      F      41          1.792
LGA    G      42      G      42          1.745
LGA    V      43      V      43          1.524
LGA    M      44      M      44          2.409
LGA    A      45      A      45          2.884
LGA    E      46      E      46          2.531
LGA    I      47      I      47          2.717
LGA    A      48      A      48          3.220
LGA    D      49      D      49          3.218
LGA    E      50      E      50          3.032
LGA    L      51      L      51          3.434
LGA    K      52      K      52          3.726
LGA    A      53      A      53          3.127
LGA    R      54      R      54          2.804
LGA    D      55      D      55          2.338
LGA    G      56      G      56          3.317
LGA    D      57      D      57          3.321
LGA    Q      58      Q      58          2.633
LGA    R      59      R      59          6.402
LGA    T      60      T      60          6.604
LGA    A      61      A      61          6.554
LGA    L      62      L      62          8.295
LGA    L      63      L      63         12.116
LGA    S      64      S      64         12.993
LGA    L      65      L      65         10.908
LGA    F      66      F      66         14.601
LGA    E      67      E      67         17.999
LGA    Y      68      Y      68         15.012
LGA    P      69      P      69         17.584
LGA    N      70      N      70         12.335
LGA    M      71      M      71         12.948
LGA    Q      72      Q      72          8.414
LGA    V      73      V      73          5.606
LGA    R      74      R      74          4.910
LGA    L      75      L      75          6.121
LGA    Q      76      Q      76          6.486
LGA    A      77      A      77          2.533
LGA    A      78      A      78          5.453
LGA    K      79      K      79         10.061
LGA    L      80      L      80          8.784
LGA    T      81      T      81          3.727
LGA    L      82      L      82         10.409
LGA    A      83      A      83         13.667
LGA    V      84      V      84         14.517
LGA    A      85      A      85         14.993
LGA    P      86      P      86         19.219
LGA    V      87      V      87         20.953
LGA    K      88      K      88         17.461
LGA    A      89      A      89         16.217
LGA    R      90      R      90         20.706
LGA    E      91      E      91         21.268
LGA    Q      92      Q      92         17.572
LGA    L      93      L      93         18.676
LGA    E      94      E      94         22.918
LGA    A      95      A      95         21.576
LGA    I      96      I      96         18.751
LGA    V      97      V      97         22.155
LGA    S      98      S      98         24.912
LGA    S      99      S      99         22.674
LGA    K     100      K     100         22.422
LGA    W     101      W     101         17.051
LGA    F     102      F     102         16.391
LGA    P     103      P     103         16.705
LGA    Q     104      Q     104         11.697
LGA    A     105      A     105         11.342
LGA    G     106      G     106         12.500
LGA    D     107      D     107         14.669
LGA    A     108      A     108         16.101
LGA    G     109      G     109         17.512
LGA    M     110      M     110         18.332
LGA    C     111      C     111         18.795
LGA    L     112      L     112         21.055
LGA    D     113      D     113         22.769
LGA    L     114      L     114         22.994
LGA    L     115      L     115         23.926
LGA    D     116      D     116         26.441
LGA    D     117      D     117         27.417
LGA    G     118      G     118         27.140
LGA    T     119      T     119         26.542
LGA    F     120      F     120         25.377
LGA    K     121      K     121         22.257
LGA    P     122      P     122         18.222
LGA    K     123      K     123         19.831

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  123  121    4.0     41    2.08    38.223    34.056     1.881

LGA_LOCAL      RMSD =  2.080  Number of atoms =   41  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 13.264  Number of atoms =  121 
Std_ALL_ATOMS  RMSD =  9.634  (standard rmsd on all 121 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.023376 * X  +   0.851607 * Y  +   0.523660 * Z  + -18.777321
  Y_new =   0.627886 * X  +  -0.420112 * Y  +   0.655183 * Z  +  42.510418
  Z_new =   0.777954 * X  +   0.313483 * Y  +  -0.544532 * Z  +   0.440339 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.619238   -0.522354  [ DEG:   150.0713    -29.9287 ]
  Theta =  -0.891403   -2.250189  [ DEG:   -51.0737   -128.9263 ]
  Phi   =   1.533584   -1.608008  [ DEG:    87.8679    -92.1321 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0382TS599_3                                  
REMARK     2: T0382.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0382TS599_3.T0382.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  123  121   4.0   41   2.08  34.056     9.63
REMARK  ---------------------------------------------------------- 
MOLECULE T0382TS599_3
PFRMAT TS                                                                       
TARGET T0382                                                                    
MODEL  3                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1     -12.639  38.932  -6.269  1.00  0.00              
ATOM      2  CA  SER     2      -9.578  38.205  -8.970  1.00  0.00              
ATOM      3  CA  LYS     3     -13.036  36.313 -10.448  1.00  0.00              
ATOM      4  CA  LEU     4     -15.946  38.401 -10.242  1.00  0.00              
ATOM      5  CA  ASP     5     -16.521  40.381 -13.459  1.00  0.00              
ATOM      6  CA  LEU     6     -18.861  43.193 -12.372  1.00  0.00              
ATOM      7  CA  HIS     7     -20.931  43.411 -15.570  1.00  0.00              
ATOM      8  CA  GLN     8     -21.725  39.679 -15.564  1.00  0.00              
ATOM      9  CA  MET     9     -22.441  39.161 -11.871  1.00  0.00              
ATOM     10  CA  THR    10     -25.931  37.837 -11.153  1.00  0.00              
ATOM     11  CA  THR    11     -27.522  38.919  -7.814  1.00  0.00              
ATOM     12  CA  GLN    12     -27.406  35.421  -6.457  1.00  0.00              
ATOM     13  CA  ASP    13     -23.762  35.037  -7.291  1.00  0.00              
ATOM     14  CA  LEU    14     -22.837  38.349  -5.786  1.00  0.00              
ATOM     15  CA  VAL    15     -24.768  37.805  -2.617  1.00  0.00              
ATOM     16  CA  ALA    16     -23.235  34.416  -2.000  1.00  0.00              
ATOM     17  CA  LEU    17     -19.712  35.597  -2.604  1.00  0.00              
ATOM     18  CA  PHE    18     -19.977  38.558  -0.248  1.00  0.00              
ATOM     19  CA  ALA    19     -21.469  36.468   2.500  1.00  0.00              
ATOM     20  CA  LYS    20     -18.844  33.762   2.266  1.00  0.00              
ATOM     21  CA  VAL    21     -16.007  36.239   2.420  1.00  0.00              
ATOM     22  CA  THR    22     -17.531  37.953   5.471  1.00  0.00              
ATOM     23  CA  VAL    23     -18.067  34.682   7.283  1.00  0.00              
ATOM     24  CA  GLU    24     -14.486  33.457   6.670  1.00  0.00              
ATOM     25  CA  GLN    25     -12.771  36.631   7.806  1.00  0.00              
ATOM     26  CA  ASP    26     -14.782  36.839  10.964  1.00  0.00              
ATOM     27  CA  ASP    27     -13.976  33.296  12.071  1.00  0.00              
ATOM     28  CA  ALA    28     -10.186  33.715  11.539  1.00  0.00              
ATOM     29  CA  LEU    29      -9.824  36.933  13.444  1.00  0.00              
ATOM     30  CA  LEU    30     -11.963  35.718  16.394  1.00  0.00              
ATOM     31  CA  GLY    31      -9.990  32.548  16.959  1.00  0.00              
ATOM     32  CA  ASN    32      -6.757  34.606  17.023  1.00  0.00              
ATOM     33  CA  GLN    33      -4.789  32.866  14.339  1.00  0.00              
ATOM     34  CA  ILE    34      -2.154  35.437  13.320  1.00  0.00              
ATOM     35  CA  SER    35      -0.971  33.725  10.135  1.00  0.00              
ATOM     36  CA  ARG    36      -4.421  33.370   8.576  1.00  0.00              
ATOM     37  CA  PHE    37      -5.306  36.998   9.220  1.00  0.00              
ATOM     38  CA  ASN    38      -2.091  38.301   7.699  1.00  0.00              
ATOM     39  CA  ARG    39      -2.588  36.120   4.577  1.00  0.00              
ATOM     40  CA  LEU    40      -6.121  37.460   4.133  1.00  0.00              
ATOM     41  CA  PHE    41      -4.827  41.066   4.489  1.00  0.00              
ATOM     42  CA  GLY    42      -2.108  40.475   1.854  1.00  0.00              
ATOM     43  CA  VAL    43      -4.766  39.000  -0.497  1.00  0.00              
ATOM     44  CA  MET    44      -6.983  41.998  -0.029  1.00  0.00              
ATOM     45  CA  ALA    45      -4.001  44.282  -0.878  1.00  0.00              
ATOM     46  CA  GLU    46      -3.254  42.275  -4.018  1.00  0.00              
ATOM     47  CA  ILE    47      -6.921  42.477  -5.163  1.00  0.00              
ATOM     48  CA  ALA    48      -7.226  46.179  -4.524  1.00  0.00              
ATOM     49  CA  ASP    49      -4.104  46.883  -6.447  1.00  0.00              
ATOM     50  CA  GLU    50      -5.391  44.746  -9.368  1.00  0.00              
ATOM     51  CA  LEU    51      -8.708  46.522  -9.248  1.00  0.00              
ATOM     52  CA  LYS    52      -7.023  49.932  -9.290  1.00  0.00              
ATOM     53  CA  ALA    53      -5.433  49.003 -12.609  1.00  0.00              
ATOM     54  CA  ARG    54      -8.749  47.940 -14.189  1.00  0.00              
ATOM     55  CA  ASP    55     -11.103  49.900 -16.258  1.00  0.00              
ATOM     56  CA  GLY    56     -12.631  53.148 -15.048  1.00  0.00              
ATOM     57  CA  ASP    57     -15.977  51.950 -13.574  1.00  0.00              
ATOM     58  CA  GLN    58     -14.010  49.337 -11.569  1.00  0.00              
ATOM     59  CA  ARG    59     -11.511  51.865 -10.275  1.00  0.00              
ATOM     60  CA  THR    60     -14.158  53.992  -8.622  1.00  0.00              
ATOM     61  CA  ALA    61     -15.631  50.977  -6.828  1.00  0.00              
ATOM     62  CA  LEU    62     -12.187  49.819  -5.593  1.00  0.00              
ATOM     63  CA  LEU    63     -11.290  53.285  -4.289  1.00  0.00              
ATOM     64  CA  SER    64     -14.511  53.270  -2.243  1.00  0.00              
ATOM     65  CA  LEU    65     -13.654  49.847  -0.825  1.00  0.00              
ATOM     66  CA  PHE    66     -10.148  51.041   0.082  1.00  0.00              
ATOM     67  CA  GLU    67     -11.693  53.738   2.269  1.00  0.00              
ATOM     68  CA  TYR    68     -13.468  51.007   4.279  1.00  0.00              
ATOM     69  CA  PRO    69     -12.061  50.829   7.781  1.00  0.00              
ATOM     70  CA  ASN    70     -11.782  47.059   7.937  1.00  0.00              
ATOM     71  CA  MET    71      -8.380  46.519   6.239  1.00  0.00              
ATOM     72  CA  GLN    72      -9.256  43.125   4.734  1.00  0.00              
ATOM     73  CA  VAL    73     -12.853  43.769   3.687  1.00  0.00              
ATOM     74  CA  ARG    74     -15.662  42.401   5.765  1.00  0.00              
ATOM     75  CA  LEU    75     -19.221  41.706   4.787  1.00  0.00              
ATOM     76  CA  GLN    76     -20.870  45.047   5.681  1.00  0.00              
ATOM     77  CA  ALA    77     -18.028  47.075   4.154  1.00  0.00              
ATOM     78  CA  ALA    78     -18.057  45.090   0.907  1.00  0.00              
ATOM     79  CA  LYS    79     -21.864  45.229   0.650  1.00  0.00              
ATOM     80  CA  LEU    80     -21.951  49.018   1.209  1.00  0.00              
ATOM     81  CA  THR    81     -19.285  49.686  -1.439  1.00  0.00              
ATOM     82  CA  LEU    82     -21.326  47.567  -3.917  1.00  0.00              
ATOM     83  CA  ALA    83     -25.042  48.467  -3.589  1.00  0.00              
ATOM     84  CA  VAL    84     -27.606  45.806  -4.210  1.00  0.00              
ATOM     85  CA  ALA    85     -31.096  46.466  -5.484  1.00  0.00              
ATOM     86  CA  PRO    86     -33.810  46.614  -2.766  1.00  0.00              
ATOM     87  CA  VAL    87     -35.773  43.536  -3.553  1.00  0.00              
ATOM     88  CA  LYS    88     -32.786  41.337  -4.073  1.00  0.00              
ATOM     89  CA  ALA    89     -31.040  42.437  -0.850  1.00  0.00              
ATOM     90  CA  ARG    90     -34.128  41.861   1.296  1.00  0.00              
ATOM     91  CA  GLU    91     -34.542  38.428  -0.208  1.00  0.00              
ATOM     92  CA  GLN    92     -30.881  37.562   0.449  1.00  0.00              
ATOM     93  CA  LEU    93     -31.181  38.702   4.127  1.00  0.00              
ATOM     94  CA  GLU    94     -34.312  36.592   4.481  1.00  0.00              
ATOM     95  CA  ALA    95     -32.443  33.595   3.002  1.00  0.00              
ATOM     96  CA  ILE    96     -29.557  34.104   5.432  1.00  0.00              
ATOM     97  CA  VAL    97     -31.876  34.331   8.374  1.00  0.00              
ATOM     98  CA  SER    98     -33.675  31.103   7.330  1.00  0.00              
ATOM     99  CA  SER    99     -30.507  29.081   6.710  1.00  0.00              
ATOM    100  CA  LYS   100     -28.857  29.466  10.064  1.00  0.00              
ATOM    101  CA  TRP   101     -25.914  31.722   8.977  1.00  0.00              
ATOM    102  CA  PHE   102     -27.038  34.402  11.370  1.00  0.00              
ATOM    103  CA  PRO   103     -27.267  37.838   9.824  1.00  0.00              
ATOM    104  CA  GLN   104     -25.437  39.855  12.371  1.00  0.00              
ATOM    105  CA  ALA   105     -26.917  43.238  13.144  1.00  0.00              
ATOM    106  CA  GLY   106     -24.401  45.606  11.510  1.00  0.00              
ATOM    107  CA  ASP   107     -24.760  44.022   8.077  1.00  0.00              
ATOM    108  CA  ALA   108     -28.514  43.352   7.835  1.00  0.00              
ATOM    109  CA  GLY   109     -29.980  46.502   9.321  1.00  0.00              
ATOM    110  CA  MET   110     -27.632  48.890   7.448  1.00  0.00              
ATOM    111  CA  CYS   111     -28.205  47.216   4.107  1.00  0.00              
ATOM    112  CA  LEU   112     -31.979  47.224   4.427  1.00  0.00              
ATOM    113  CA  ASP   113     -32.116  50.932   5.400  1.00  0.00              
ATOM    114  CA  LEU   114     -29.910  51.708   2.364  1.00  0.00              
ATOM    115  CA  LEU   115     -32.214  49.610   0.104  1.00  0.00              
ATOM    116  CA  ASP   116     -35.398  51.374   1.352  1.00  0.00              
ATOM    117  CA  ASP   117     -33.653  54.733   0.823  1.00  0.00              
ATOM    118  CA  GLY   118     -32.684  54.000  -2.736  1.00  0.00              
ATOM    119  CA  THR   119     -28.933  54.126  -2.222  1.00  0.00              
ATOM    120  CA  PHE   120     -28.570  50.762  -3.854  1.00  0.00              
ATOM    121  CA  LYS   121     -26.730  50.322  -6.941  1.00  0.00              
ATOM    122  CA  PRO   122     -23.311  48.076  -7.955  1.00  0.00              
ATOM    123  CA  LYS   123     -24.951  46.964 -10.955  1.00  0.00              
TER                                                                             
END
