
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  123 (  123),  selected  121 , name T0382TS599_4
# Molecule2: number of CA atoms  121 (  929),  selected  121 , name T0382.pdb
# PARAMETERS: T0382TS599_4.T0382.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    55         3 - 57          4.89    27.00
  LONGEST_CONTINUOUS_SEGMENT:    55         4 - 58          4.90    26.96
  LCS_AVERAGE:     35.45

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    30         3 - 32          1.84    23.32
  LCS_AVERAGE:     17.81

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    25         8 - 32          0.90    23.21
  LCS_AVERAGE:     13.48

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  121
LCS_GDT     K       3     K       3      5   30   55     0    4    5    5    7   28   29   31   32   33   34   36   40   44   47   53   55   56   57   57 
LCS_GDT     L       4     L       4      5   30   55     3    4    5    6    7   14   29   31   32   33   34   37   42   48   51   53   55   56   57   57 
LCS_GDT     D       5     D       5      5   30   55     3    4   21   25   26   28   29   31   32   33   34   37   42   44   51   53   55   56   57   57 
LCS_GDT     L       6     L       6      5   30   55     5    5    5    7    9   15   25   31   32   33   34   36   39   44   48   53   55   56   57   57 
LCS_GDT     H       7     H       7      5   30   55     5    5    5    7   25   27   27   31   32   33   34   36   38   43   46   49   55   56   57   57 
LCS_GDT     Q       8     Q       8     25   30   55     5    5    5   24   26   28   29   31   32   33   35   41   46   49   51   53   55   56   57   57 
LCS_GDT     M       9     M       9     25   30   55     8   16   24   25   26   28   29   31   37   43   45   48   48   49   51   53   55   56   57   57 
LCS_GDT     T      10     T      10     25   30   55    10   22   24   25   26   28   29   38   43   45   47   48   48   49   51   53   55   56   59   62 
LCS_GDT     T      11     T      11     25   30   55     9   22   24   25   26   28   33   41   44   45   47   48   48   49   51   53   58   61   65   69 
LCS_GDT     Q      12     Q      12     25   30   55    10   22   24   25   26   28   33   41   44   45   47   48   48   49   51   53   57   61   64   69 
LCS_GDT     D      13     D      13     25   30   55    10   22   24   25   26   28   29   40   43   45   47   48   48   49   51   53   55   56   59   61 
LCS_GDT     L      14     L      14     25   30   55    10   22   24   25   26   28   32   41   44   45   47   48   48   49   51   53   55   56   59   62 
LCS_GDT     V      15     V      15     25   30   55    15   22   24   25   26   28   33   41   44   45   47   48   48   49   51   53   55   56   59   62 
LCS_GDT     A      16     A      16     25   30   55    15   22   24   25   26   28   33   41   44   45   47   48   48   49   51   53   55   56   57   59 
LCS_GDT     L      17     L      17     25   30   55    15   22   24   25   26   28   33   41   44   45   47   48   48   49   51   53   55   56   57   59 
LCS_GDT     F      18     F      18     25   30   55    15   22   24   25   26   28   33   41   44   45   47   48   48   49   51   53   55   56   57   59 
LCS_GDT     A      19     A      19     25   30   55    15   22   24   25   26   28   33   41   44   45   47   48   48   49   51   53   55   56   57   57 
LCS_GDT     K      20     K      20     25   30   55    15   22   24   25   26   28   33   41   44   45   47   48   48   49   51   53   55   56   57   57 
LCS_GDT     V      21     V      21     25   30   55    15   22   24   25   26   28   33   41   44   45   47   48   48   49   51   53   55   56   57   57 
LCS_GDT     T      22     T      22     25   30   55    15   22   24   25   26   28   33   41   44   45   47   48   48   49   51   53   55   56   57   57 
LCS_GDT     V      23     V      23     25   30   55    15   22   24   25   26   28   33   41   44   45   47   48   48   49   51   53   55   56   57   57 
LCS_GDT     E      24     E      24     25   30   55    15   22   24   25   26   28   33   41   44   45   47   48   48   49   51   53   55   56   57   57 
LCS_GDT     Q      25     Q      25     25   30   55    10   22   24   25   26   28   33   41   44   45   47   48   48   49   51   53   55   56   57   57 
LCS_GDT     D      26     D      26     25   30   55    15   22   24   25   26   28   33   41   44   45   47   48   48   49   51   53   55   56   57   57 
LCS_GDT     D      27     D      27     25   30   55    15   22   24   25   26   28   33   41   44   45   47   48   48   49   51   53   55   56   57   57 
LCS_GDT     A      28     A      28     25   30   55    15   22   24   25   26   28   33   41   44   45   47   48   48   49   51   53   55   56   57   57 
LCS_GDT     L      29     L      29     25   30   55    15   22   24   25   26   28   33   41   44   45   47   48   48   49   51   53   55   56   57   57 
LCS_GDT     L      30     L      30     25   30   55    15   22   24   25   26   28   33   41   44   45   47   48   48   49   51   53   55   56   57   57 
LCS_GDT     G      31     G      31     25   30   55    14   22   24   25   26   28   33   41   44   45   47   48   48   49   51   53   55   56   57   57 
LCS_GDT     N      32     N      32     25   30   55    14   21   24   25   26   28   33   41   44   45   47   48   48   49   51   53   55   56   57   57 
LCS_GDT     Q      33     Q      33     16   26   55     3    4    6   13   22   26   33   41   44   45   47   48   48   49   51   53   55   56   57   57 
LCS_GDT     I      34     I      34     23   26   55     9   20   21   22   23   26   33   41   44   45   47   48   48   49   51   53   55   56   57   57 
LCS_GDT     S      35     S      35     23   26   55    17   20   21   22   23   26   33   40   44   45   47   48   48   49   51   53   55   56   57   57 
LCS_GDT     R      36     R      36     23   26   55    17   20   21   22   23   25   33   38   44   45   47   48   48   49   51   53   55   56   57   57 
LCS_GDT     F      37     F      37     23   26   55    17   20   21   22   23   26   33   41   44   45   47   48   48   49   51   53   55   56   57   57 
LCS_GDT     N      38     N      38     23   26   55    17   20   21   22   23   26   33   41   44   45   47   48   48   49   51   53   55   56   57   57 
LCS_GDT     R      39     R      39     23   26   55    17   20   21   22   23   26   33   41   44   45   47   48   48   49   51   53   55   56   57   57 
LCS_GDT     L      40     L      40     23   26   55    17   20   21   22   23   26   33   41   44   45   47   48   48   49   51   53   55   56   57   57 
LCS_GDT     F      41     F      41     23   26   55    17   20   21   22   23   26   33   41   44   45   47   48   48   49   51   53   55   56   57   57 
LCS_GDT     G      42     G      42     23   26   55    17   20   21   22   23   26   33   41   44   45   47   48   48   49   51   53   55   56   57   57 
LCS_GDT     V      43     V      43     23   26   55    17   20   21   22   23   26   33   41   44   45   47   48   48   49   51   53   55   56   57   57 
LCS_GDT     M      44     M      44     23   26   55    17   20   21   22   23   26   33   41   44   45   47   48   48   49   51   53   55   56   57   57 
LCS_GDT     A      45     A      45     23   26   55    17   20   21   22   23   26   33   41   44   45   47   48   48   49   51   53   55   56   57   57 
LCS_GDT     E      46     E      46     23   26   55    17   20   21   22   23   26   33   41   44   45   47   48   48   49   51   53   55   56   57   57 
LCS_GDT     I      47     I      47     23   26   55    17   20   21   22   23   26   33   41   44   45   47   48   48   49   51   53   55   56   57   59 
LCS_GDT     A      48     A      48     23   26   55    17   20   21   22   23   26   33   41   44   45   47   48   48   49   51   53   55   56   57   61 
LCS_GDT     D      49     D      49     23   26   55    17   20   21   22   23   25   33   41   44   45   47   48   48   49   51   53   55   56   57   62 
LCS_GDT     E      50     E      50     23   26   55    17   20   21   22   23   26   33   41   44   45   47   48   48   49   51   53   55   56   60   63 
LCS_GDT     L      51     L      51     23   26   55    17   20   21   22   23   26   33   41   44   45   47   48   48   49   51   53   58   61   63   69 
LCS_GDT     K      52     K      52     23   26   55    17   20   21   22   23   25   29   39   44   45   47   48   48   49   51   53   58   61   65   69 
LCS_GDT     A      53     A      53     23   26   55    13   20   21   22   23   24   33   41   44   45   47   48   48   49   51   53   58   61   65   69 
LCS_GDT     R      54     R      54     23   26   55    14   20   21   22   23   26   33   41   44   45   47   48   48   49   51   53   58   61   65   69 
LCS_GDT     D      55     D      55     23   26   55     3   12   21   22   23   26   33   41   44   45   47   48   48   49   51   53   58   61   65   69 
LCS_GDT     G      56     G      56     23   26   55     3    6   14   22   25   28   33   37   44   45   47   48   48   49   51   53   55   61   65   69 
LCS_GDT     D      57     D      57      4   11   55     3    4    5   15   17   22   28   31   32   33   40   45   48   49   51   53   55   61   65   69 
LCS_GDT     Q      58     Q      58      6   16   55     3    5    7   13   15   18   20   23   31   33   39   43   45   49   50   53   58   61   65   69 
LCS_GDT     R      59     R      59      6   16   54     4    5    8   11   15   18   20   23   25   29   33   37   40   43   48   53   58   61   65   69 
LCS_GDT     T      60     T      60      6   16   53     4    5    8    9   15   18   20   21   25   28   32   35   38   43   46   51   55   61   65   69 
LCS_GDT     A      61     A      61      6   16   51     4    5    8   10   15   18   20   23   25   28   33   36   38   43   46   52   56   61   64   69 
LCS_GDT     L      62     L      62     12   16   45     4    5   12   13   15   18   20   23   25   29   33   36   39   43   48   53   58   61   65   69 
LCS_GDT     L      63     L      63     12   16   39     4    8   12   13   15   18   20   23   25   29   33   36   39   43   48   53   58   61   65   69 
LCS_GDT     S      64     S      64     12   16   33     3    8   12   13   15   18   20   23   25   28   33   36   39   43   46   52   56   60   64   67 
LCS_GDT     L      65     L      65     12   16   33     4    9   12   13   15   18   20   23   25   29   33   36   39   43   48   53   58   61   65   69 
LCS_GDT     F      66     F      66     12   16   33     5    9   12   13   15   18   20   23   25   29   33   36   39   43   48   53   58   61   65   69 
LCS_GDT     E      67     E      67     12   16   33     4    9   12   13   15   18   20   23   25   29   33   36   39   43   48   53   58   61   65   69 
LCS_GDT     Y      68     Y      68     12   16   33     5    9   12   13   15   18   20   23   25   29   33   36   39   43   48   53   58   61   65   69 
LCS_GDT     P      69     P      69     12   16   33     3    9   12   13   15   18   20   23   25   29   33   36   39   43   48   53   58   61   65   69 
LCS_GDT     N      70     N      70     12   16   33     5    9   12   13   15   18   20   23   25   29   33   36   39   43   48   53   58   61   65   69 
LCS_GDT     M      71     M      71     12   16   33     5    9   12   13   15   18   20   23   25   29   33   36   39   43   48   53   58   61   65   69 
LCS_GDT     Q      72     Q      72     12   16   33     5    9   12   13   15   18   20   23   25   29   33   36   39   43   48   53   58   61   65   69 
LCS_GDT     V      73     V      73     12   16   33     4    9   12   13   15   18   20   23   25   29   33   36   39   43   48   53   58   61   65   69 
LCS_GDT     R      74     R      74      3   14   33     3    3    4    4    5    9   14   20   25   27   32   36   39   43   48   52   58   61   65   69 
LCS_GDT     L      75     L      75      8    9   33     8    8    8    8    9    9   10   13   18   22   28   32   39   42   47   51   58   61   65   69 
LCS_GDT     Q      76     Q      76      8    9   33     8    8    8    8    9    9   13   20   25   27   32   35   39   43   48   53   58   61   65   69 
LCS_GDT     A      77     A      77      8    9   33     8    8    8    8    9    9   10   12   18   22   26   28   35   42   46   49   56   61   64   69 
LCS_GDT     A      78     A      78      8    9   33     8    8    8    8   11   13   16   20   25   26   30   33   39   43   48   53   58   61   65   69 
LCS_GDT     K      79     K      79      8    9   33     8    8   11   12   14   16   19   23   25   29   33   36   39   43   48   53   58   61   65   69 
LCS_GDT     L      80     L      80      8    9   33     8    8    8    8   11   13   19   21   27   29   33   36   39   43   48   53   58   61   65   69 
LCS_GDT     T      81     T      81      8    9   33     8    8    8   16   19   23   25   27   27   28   33   36   39   43   48   53   58   61   65   69 
LCS_GDT     L      82     L      82      8    9   33     8    8   11   13   15   17   19   23   25   29   33   36   39   43   48   53   58   61   65   69 
LCS_GDT     A      83     A      83      3   20   33     3    3    5    8   16   19   21   22   24   29   33   36   39   43   48   53   58   61   65   69 
LCS_GDT     V      84     V      84     17   20   33     3    3    7    9   14   18   20   22   24   25   28   34   39   42   48   53   58   61   65   69 
LCS_GDT     A      85     A      85     17   20   33     9   16   16   17   18   19   21   22   24   26   30   34   39   42   48   53   58   61   65   69 
LCS_GDT     P      86     P      86     17   20   33     9   16   16   17   18   19   21   22   24   26   30   34   39   42   48   53   58   61   65   69 
LCS_GDT     V      87     V      87     17   20   33    12   16   16   17   18   19   21   22   24   26   30   34   39   42   47   53   58   61   65   69 
LCS_GDT     K      88     K      88     17   20   33    12   16   16   17   18   19   21   22   24   26   30   34   39   42   48   53   58   61   65   69 
LCS_GDT     A      89     A      89     17   20   33    12   16   16   17   18   19   21   22   25   26   30   36   39   43   48   53   58   61   65   69 
LCS_GDT     R      90     R      90     17   20   33    12   16   16   17   18   19   21   22   24   26   30   36   39   43   48   53   58   61   65   69 
LCS_GDT     E      91     E      91     17   20   33    12   16   16   17   18   19   22   23   25   26   32   36   39   43   48   53   58   61   65   69 
LCS_GDT     Q      92     Q      92     17   20   33    12   16   16   17   18   19   21   22   24   29   33   36   39   43   48   53   58   61   65   69 
LCS_GDT     L      93     L      93     17   20   33    12   16   16   17   18   19   21   22   24   29   33   36   39   43   48   53   58   61   65   69 
LCS_GDT     E      94     E      94     17   20   33    12   16   16   17   18   19   21   22   24   29   33   36   39   43   48   53   58   61   65   69 
LCS_GDT     A      95     A      95     17   20   33    12   16   16   17   18   19   21   22   24   29   33   36   38   43   48   53   58   61   65   69 
LCS_GDT     I      96     I      96     17   20   33    12   16   16   17   18   19   21   22   24   28   33   35   38   43   48   53   58   61   65   69 
LCS_GDT     V      97     V      97     17   20   33    12   16   16   17   18   19   21   22   24   26   33   35   38   43   48   53   58   61   65   69 
LCS_GDT     S      98     S      98     17   20   33    12   16   16   17   18   19   21   22   24   28   33   35   38   43   48   53   58   61   65   69 
LCS_GDT     S      99     S      99     17   20   33    12   16   16   17   18   19   21   22   24   26   30   34   38   42   48   53   58   61   65   69 
LCS_GDT     K     100     K     100     17   20   33     5   16   16   17   18   19   21   22   24   25   28   32   38   42   46   52   55   60   65   69 
LCS_GDT     W     101     W     101     17   20   33     3    6   16   17   18   19   21   22   24   26   30   34   38   42   48   53   58   61   65   69 
LCS_GDT     F     102     F     102      5   20   33     3    4    6    9   15   19   21   22   24   26   30   34   38   42   48   53   58   61   65   69 
LCS_GDT     P     103     P     103      5   20   33     3    4    6    8    9   11   14   17   23   26   30   34   38   42   45   51   58   61   65   69 
LCS_GDT     Q     104     Q     104      3   12   33     3    3    3    6   11   17   18   19   23   29   33   35   38   43   48   53   58   61   65   69 
LCS_GDT     A     105     A     105      3    5   33     3    3    3    5    6   10   17   23   24   29   33   36   39   43   48   53   58   61   65   69 
LCS_GDT     G     106     G     106      3    5   33     3    3    3    8    9   11   13   15   19   24   31   35   38   43   48   53   58   61   65   69 
LCS_GDT     D     107     D     107     14   17   33     6   12   13   14   16   17   18   23   24   29   33   36   39   43   48   53   58   61   65   69 
LCS_GDT     A     108     A     108     14   17   33     6   12   13   14   16   17   19   23   25   29   33   36   39   43   48   53   58   61   65   69 
LCS_GDT     G     109     G     109     14   17   33     9   12   13   14   16   17   17   23   24   28   32   36   39   43   48   53   58   61   65   69 
LCS_GDT     M     110     M     110     14   17   33     9   12   13   14   16   17   17   23   24   29   33   36   39   43   48   53   58   61   65   69 
LCS_GDT     C     111     C     111     14   17   33     9   12   13   14   16   17   17   23   24   29   33   36   39   43   48   53   58   61   65   69 
LCS_GDT     L     112     L     112     14   17   31     9   12   13   14   16   17   17   17   24   28   32   35   39   43   48   53   58   61   65   69 
LCS_GDT     D     113     D     113     14   17   23     9   12   13   14   16   17   17   17   21   24   28   32   37   43   47   53   58   61   65   69 
LCS_GDT     L     114     L     114     14   17   23     9   12   13   14   16   17   17   17   20   23   27   33   38   43   47   53   58   61   65   69 
LCS_GDT     L     115     L     115     14   17   23     9   12   13   14   16   17   17   20   22   25   30   32   34   43   46   51   58   61   65   69 
LCS_GDT     D     116     D     116     14   17   23     9   12   13   14   16   17   17   17   18   25   30   32   34   35   40   45   52   56   65   69 
LCS_GDT     D     117     D     117     14   17   23     9   12   13   14   16   17   17   17   18   21   30   32   33   36   44   48   52   56   65   69 
LCS_GDT     G     118     G     118     14   17   23     8   12   13   14   16   17   17   17   18   22   23   26   33   35   43   48   51   56   59   64 
LCS_GDT     T     119     T     119     14   17   23     3    5   12   14   16   17   17   17   18   22   26   27   33   40   44   48   52   56   62   67 
LCS_GDT     F     120     F     120     14   17   23     3   10   13   14   15   17   17   19   22   24   27   27   33   40   44   48   52   56   65   69 
LCS_GDT     K     121     K     121      5   17   23     3    4    5    9   16   17   17   17   18   22   23   25   27   30   32   37   43   48   53   57 
LCS_GDT     P     122     P     122      5   17   23     3    4    5   11   16   17   17   17   18   19   20   22   27   30   32   36   39   48   50   57 
LCS_GDT     K     123     K     123      5   17   23     1    4    5   11   16   17   17   17   18   19   20   22   25   30   31   34   37   39   45   49 
LCS_AVERAGE  LCS_A:  22.25  (  13.48   17.81   35.45 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     17     22     24     25     26     28     33     41     44     45     47     48     48     49     51     53     58     61     65     69 
GDT PERCENT_CA  14.05  18.18  19.83  20.66  21.49  23.14  27.27  33.88  36.36  37.19  38.84  39.67  39.67  40.50  42.15  43.80  47.93  50.41  53.72  57.02
GDT RMS_LOCAL    0.32   0.63   0.69   0.89   1.02   1.33   2.61   3.04   3.18   3.23   3.39   3.52   3.52   3.74   4.20   4.56   6.37   6.54   6.99   7.20
GDT RMS_ALL_CA  24.64  23.63  23.85  23.51  23.23  23.63  27.35  27.98  27.68  27.79  27.92  27.93  27.93  27.69  27.56  27.31  22.29  21.99  22.93  22.70

#      Molecule1      Molecule2       DISTANCE
LGA    K       3      K       3         15.513
LGA    L       4      L       4         12.804
LGA    D       5      D       5         14.613
LGA    L       6      L       6         13.179
LGA    H       7      H       7         16.133
LGA    Q       8      Q       8         12.796
LGA    M       9      M       9          7.928
LGA    T      10      T      10          6.107
LGA    T      11      T      11          3.254
LGA    Q      12      Q      12          3.665
LGA    D      13      D      13          5.112
LGA    L      14      L      14          3.994
LGA    V      15      V      15          2.076
LGA    A      16      A      16          3.168
LGA    L      17      L      17          3.662
LGA    F      18      F      18          2.977
LGA    A      19      A      19          2.733
LGA    K      20      K      20          2.904
LGA    V      21      V      21          2.856
LGA    T      22      T      22          2.921
LGA    V      23      V      23          2.752
LGA    E      24      E      24          2.468
LGA    Q      25      Q      25          3.396
LGA    D      26      D      26          3.498
LGA    D      27      D      27          2.227
LGA    A      28      A      28          2.391
LGA    L      29      L      29          3.596
LGA    L      30      L      30          3.089
LGA    G      31      G      31          1.554
LGA    N      32      N      32          3.197
LGA    Q      33      Q      33          3.780
LGA    I      34      I      34          2.511
LGA    S      35      S      35          4.269
LGA    R      36      R      36          4.597
LGA    F      37      F      37          2.667
LGA    N      38      N      38          2.543
LGA    R      39      R      39          3.912
LGA    L      40      L      40          3.503
LGA    F      41      F      41          2.028
LGA    G      42      G      42          2.852
LGA    V      43      V      43          3.467
LGA    M      44      M      44          3.040
LGA    A      45      A      45          2.666
LGA    E      46      E      46          2.725
LGA    I      47      I      47          3.250
LGA    A      48      A      48          3.780
LGA    D      49      D      49          3.295
LGA    E      50      E      50          2.315
LGA    L      51      L      51          3.750
LGA    K      52      K      52          4.602
LGA    A      53      A      53          3.302
LGA    R      54      R      54          2.843
LGA    D      55      D      55          3.238
LGA    G      56      G      56          6.295
LGA    D      57      D      57         10.862
LGA    Q      58      Q      58         11.368
LGA    R      59      R      59         13.376
LGA    T      60      T      60         16.984
LGA    A      61      A      61         18.776
LGA    L      62      L      62         20.127
LGA    L      63      L      63         22.773
LGA    S      64      S      64         25.571
LGA    L      65      L      65         28.282
LGA    F      66      F      66         30.316
LGA    E      67      E      67         33.232
LGA    Y      68      Y      68         34.766
LGA    P      69      P      69         39.675
LGA    N      70      N      70         40.489
LGA    M      71      M      71         40.149
LGA    Q      72      Q      72         37.140
LGA    V      73      V      73         33.478
LGA    R      74      R      74         33.564
LGA    L      75      L      75         32.758
LGA    Q      76      Q      76         27.678
LGA    A      77      A      77         23.366
LGA    A      78      A      78         25.543
LGA    K      79      K      79         26.380
LGA    L      80      L      80         20.548
LGA    T      81      T      81         18.792
LGA    L      82      L      82         23.699
LGA    A      83      A      83         25.414
LGA    V      84      V      84         27.939
LGA    A      85      A      85         32.550
LGA    P      86      P      86         38.440
LGA    V      87      V      87         42.215
LGA    K      88      K      88         36.949
LGA    A      89      A      89         36.280
LGA    R      90      R      90         43.269
LGA    E      91      E      91         42.985
LGA    Q      92      Q      92         38.363
LGA    L      93      L      93         42.758
LGA    E      94      E      94         48.130
LGA    A      95      A      95         44.640
LGA    I      96      I      96         44.147
LGA    V      97      V      97         51.208
LGA    S      98      S      98         52.755
LGA    S      99      S      99         49.205
LGA    K     100      K     100         53.895
LGA    W     101      W     101         48.918
LGA    F     102      F     102         51.132
LGA    P     103      P     103         47.178
LGA    Q     104      Q     104         45.341
LGA    A     105      A     105         48.270
LGA    G     106      G     106         45.788
LGA    D     107      D     107         43.331
LGA    A     108      A     108         41.060
LGA    G     109      G     109         45.318
LGA    M     110      M     110         45.194
LGA    C     111      C     111         40.053
LGA    L     112      L     112         40.453
LGA    D     113      D     113         44.082
LGA    L     114      L     114         41.521
LGA    L     115      L     115         37.704
LGA    D     116      D     116         40.531
LGA    D     117      D     117         42.014
LGA    G     118      G     118         38.116
LGA    T     119      T     119         39.574
LGA    F     120      F     120         37.784
LGA    K     121      K     121         36.686
LGA    P     122      P     122         35.874
LGA    K     123      K     123         33.525

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  123  121    4.0     41    3.04    29.132    26.586     1.306

LGA_LOCAL      RMSD =  3.038  Number of atoms =   41  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 28.135  Number of atoms =  121 
Std_ALL_ATOMS  RMSD = 15.549  (standard rmsd on all 121 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.755453 * X  +   0.464427 * Y  +  -0.462167 * Z  +  -8.955664
  Y_new =   0.570858 * X  +   0.120350 * Y  +  -0.812180 * Z  +  33.185642
  Z_new =  -0.321577 * X  +  -0.877396 * Y  +  -0.356041 * Z  + -10.882691 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.956286    1.185306  [ DEG:  -112.0870     67.9130 ]
  Theta =   0.327395    2.814198  [ DEG:    18.7583    161.2417 ]
  Phi   =   2.494485   -0.647108  [ DEG:   142.9235    -37.0765 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0382TS599_4                                  
REMARK     2: T0382.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0382TS599_4.T0382.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  123  121   4.0   41   3.04  26.586    15.55
REMARK  ---------------------------------------------------------- 
MOLECULE T0382TS599_4
PFRMAT TS                                                                       
TARGET T0382                                                                    
MODEL  4                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1     -10.208  34.497  -7.979  1.00  0.00              
ATOM      2  CA  SER     2      -9.211  31.048  -8.135  1.00  0.00              
ATOM      3  CA  LYS     3     -10.030  28.492 -11.083  1.00  0.00              
ATOM      4  CA  LEU     4     -12.218  30.944 -12.659  1.00  0.00              
ATOM      5  CA  ASP     5     -15.091  29.147 -14.431  1.00  0.00              
ATOM      6  CA  LEU     6     -16.063  31.091 -17.552  1.00  0.00              
ATOM      7  CA  HIS     7     -19.617  29.776 -17.925  1.00  0.00              
ATOM      8  CA  GLN     8     -20.635  31.010 -14.445  1.00  0.00              
ATOM      9  CA  MET     9     -19.321  34.522 -14.644  1.00  0.00              
ATOM     10  CA  THR    10     -21.249  37.750 -14.473  1.00  0.00              
ATOM     11  CA  THR    11     -19.249  40.639 -12.994  1.00  0.00              
ATOM     12  CA  GLN    12     -21.642  41.183 -10.152  1.00  0.00              
ATOM     13  CA  ASP    13     -21.518  37.440  -9.368  1.00  0.00              
ATOM     14  CA  LEU    14     -17.702  37.449  -9.423  1.00  0.00              
ATOM     15  CA  VAL    15     -17.507  40.472  -7.197  1.00  0.00              
ATOM     16  CA  ALA    16     -19.893  38.915  -4.711  1.00  0.00              
ATOM     17  CA  LEU    17     -17.997  35.640  -4.621  1.00  0.00              
ATOM     18  CA  PHE    18     -14.737  37.489  -4.003  1.00  0.00              
ATOM     19  CA  ALA    19     -16.350  39.530  -1.178  1.00  0.00              
ATOM     20  CA  LYS    20     -17.644  36.324   0.372  1.00  0.00              
ATOM     21  CA  VAL    21     -14.090  34.895   0.309  1.00  0.00              
ATOM     22  CA  THR    22     -12.756  38.062   1.937  1.00  0.00              
ATOM     23  CA  VAL    23     -15.429  37.842   4.640  1.00  0.00              
ATOM     24  CA  GLU    24     -14.667  34.163   5.331  1.00  0.00              
ATOM     25  CA  GLN    25     -10.947  34.869   5.695  1.00  0.00              
ATOM     26  CA  ASP    26     -11.749  37.653   8.184  1.00  0.00              
ATOM     27  CA  ASP    27     -13.761  35.295  10.425  1.00  0.00              
ATOM     28  CA  ALA    28     -10.871  32.820  10.295  1.00  0.00              
ATOM     29  CA  LEU    29      -8.420  35.487  11.488  1.00  0.00              
ATOM     30  CA  LEU    30     -10.457  36.273  14.591  1.00  0.00              
ATOM     31  CA  GLY    31     -10.542  32.573  15.427  1.00  0.00              
ATOM     32  CA  ASN    32      -6.833  32.099  14.747  1.00  0.00              
ATOM     33  CA  GLN    33      -5.448  34.610  17.188  1.00  0.00              
ATOM     34  CA  ILE    34      -2.890  36.742  15.484  1.00  0.00              
ATOM     35  CA  SER    35       0.244  37.093  13.463  1.00  0.00              
ATOM     36  CA  ARG    36      -0.514  34.653  10.584  1.00  0.00              
ATOM     37  CA  PHE    37      -4.155  35.787  10.691  1.00  0.00              
ATOM     38  CA  ASN    38      -3.122  39.440  10.022  1.00  0.00              
ATOM     39  CA  ARG    39      -0.916  38.340   7.104  1.00  0.00              
ATOM     40  CA  LEU    40      -3.726  36.259   5.595  1.00  0.00              
ATOM     41  CA  PHE    41      -6.099  39.214   5.979  1.00  0.00              
ATOM     42  CA  GLY    42      -3.711  41.510   4.200  1.00  0.00              
ATOM     43  CA  VAL    43      -3.335  39.075   1.274  1.00  0.00              
ATOM     44  CA  MET    44      -7.088  38.486   0.881  1.00  0.00              
ATOM     45  CA  ALA    45      -7.742  42.170   1.062  1.00  0.00              
ATOM     46  CA  GLU    46      -5.216  42.864  -1.633  1.00  0.00              
ATOM     47  CA  ILE    47      -6.592  40.239  -4.020  1.00  0.00              
ATOM     48  CA  ALA    48     -10.204  41.451  -3.599  1.00  0.00              
ATOM     49  CA  ASP    49      -9.227  45.014  -4.156  1.00  0.00              
ATOM     50  CA  GLU    50      -7.296  44.177  -7.277  1.00  0.00              
ATOM     51  CA  LEU    51     -10.048  42.155  -8.850  1.00  0.00              
ATOM     52  CA  LYS    52     -12.650  44.918  -8.221  1.00  0.00              
ATOM     53  CA  ALA    53     -10.451  47.614  -9.653  1.00  0.00              
ATOM     54  CA  ARG    54      -9.746  45.566 -12.835  1.00  0.00              
ATOM     55  CA  ASP    55     -11.085  47.721 -15.497  1.00  0.00              
ATOM     56  CA  GLY    56     -14.110  46.786 -17.466  1.00  0.00              
ATOM     57  CA  ASP    57     -11.921  46.343 -20.606  1.00  0.00              
ATOM     58  CA  GLN    58      -9.743  43.697 -18.958  1.00  0.00              
ATOM     59  CA  ARG    59     -12.773  41.740 -17.833  1.00  0.00              
ATOM     60  CA  THR    60     -14.222  41.838 -21.356  1.00  0.00              
ATOM     61  CA  ALA    61     -11.002  40.392 -22.772  1.00  0.00              
ATOM     62  CA  LEU    62     -11.407  37.513 -20.286  1.00  0.00              
ATOM     63  CA  LEU    63     -15.008  36.898 -21.306  1.00  0.00              
ATOM     64  CA  SER    64     -13.931  36.789 -24.943  1.00  0.00              
ATOM     65  CA  LEU    65     -11.173  34.307 -24.127  1.00  0.00              
ATOM     66  CA  PHE    66     -13.639  32.044 -22.322  1.00  0.00              
ATOM     67  CA  GLU    67     -15.663  31.756 -25.523  1.00  0.00              
ATOM     68  CA  TYR    68     -12.618  30.799 -27.500  1.00  0.00              
ATOM     69  CA  PRO    69     -12.513  27.228 -28.684  1.00  0.00              
ATOM     70  CA  ASN    70      -8.784  26.911 -27.902  1.00  0.00              
ATOM     71  CA  MET    71      -8.804  25.396 -24.389  1.00  0.00              
ATOM     72  CA  GLN    72      -5.622  27.092 -23.297  1.00  0.00              
ATOM     73  CA  VAL    73      -6.350  30.771 -24.137  1.00  0.00              
ATOM     74  CA  ARG    74      -4.758  33.283 -21.792  1.00  0.00              
ATOM     75  CA  LEU    75      -5.343  37.037 -21.607  1.00  0.00              
ATOM     76  CA  GLN    76      -2.749  38.286 -19.132  1.00  0.00              
ATOM     77  CA  ALA    77      -4.761  40.855 -17.173  1.00  0.00              
ATOM     78  CA  ALA    78      -7.451  38.196 -16.856  1.00  0.00              
ATOM     79  CA  LYS    79      -5.121  35.445 -15.619  1.00  0.00              
ATOM     80  CA  LEU    80      -3.381  37.790 -13.177  1.00  0.00              
ATOM     81  CA  THR    81      -6.581  39.329 -11.776  1.00  0.00              
ATOM     82  CA  LEU    82      -7.987  35.783 -11.211  1.00  0.00              
ATOM     83  CA  ALA    83      -5.289  33.372  -9.926  1.00  0.00              
ATOM     84  CA  VAL    84      -6.073  29.760 -10.657  1.00  0.00              
ATOM     85  CA  ALA    85      -4.941  27.159  -8.130  1.00  0.00              
ATOM     86  CA  PRO    86      -3.051  24.310  -9.909  1.00  0.00              
ATOM     87  CA  VAL    87      -4.920  21.432  -8.271  1.00  0.00              
ATOM     88  CA  LYS    88      -8.276  22.958  -9.054  1.00  0.00              
ATOM     89  CA  ALA    89      -7.275  23.528 -12.706  1.00  0.00              
ATOM     90  CA  ARG    90      -6.537  19.803 -13.146  1.00  0.00              
ATOM     91  CA  GLU    91      -9.886  19.002 -11.625  1.00  0.00              
ATOM     92  CA  GLN    92     -11.727  21.391 -13.919  1.00  0.00              
ATOM     93  CA  LEU    93     -10.045  20.009 -17.012  1.00  0.00              
ATOM     94  CA  GLU    94     -10.921  16.515 -15.949  1.00  0.00              
ATOM     95  CA  ALA    95     -14.611  17.448 -15.385  1.00  0.00              
ATOM     96  CA  ILE    96     -14.726  19.019 -18.825  1.00  0.00              
ATOM     97  CA  VAL    97     -13.170  15.887 -20.400  1.00  0.00              
ATOM     98  CA  SER    98     -15.725  13.654 -18.654  1.00  0.00              
ATOM     99  CA  SER    99     -18.688  15.795 -19.815  1.00  0.00              
ATOM    100  CA  LYS   100     -17.506  15.837 -23.448  1.00  0.00              
ATOM    101  CA  TRP   101     -16.504  19.464 -23.681  1.00  0.00              
ATOM    102  CA  PHE   102     -13.058  19.311 -25.364  1.00  0.00              
ATOM    103  CA  PRO   103     -11.176  22.076 -23.635  1.00  0.00              
ATOM    104  CA  GLN   104      -7.793  20.566 -22.659  1.00  0.00              
ATOM    105  CA  ALA   105      -4.928  22.981 -23.070  1.00  0.00              
ATOM    106  CA  GLY   106      -4.488  24.598 -19.618  1.00  0.00              
ATOM    107  CA  ASP   107      -1.510  22.711 -18.287  1.00  0.00              
ATOM    108  CA  ALA   108      -1.445  23.762 -14.614  1.00  0.00              
ATOM    109  CA  GLY   109       2.297  24.382 -14.291  1.00  0.00              
ATOM    110  CA  MET   110       2.620  26.050 -17.664  1.00  0.00              
ATOM    111  CA  CYS   111      -0.320  28.512 -17.352  1.00  0.00              
ATOM    112  CA  LEU   112       0.660  29.572 -13.859  1.00  0.00              
ATOM    113  CA  ASP   113       4.300  30.109 -14.942  1.00  0.00              
ATOM    114  CA  LEU   114       3.338  32.200 -17.952  1.00  0.00              
ATOM    115  CA  LEU   115       1.033  34.358 -15.807  1.00  0.00              
ATOM    116  CA  ASP   116       3.669  35.002 -13.186  1.00  0.00              
ATOM    117  CA  ASP   117       6.090  36.031 -15.937  1.00  0.00              
ATOM    118  CA  GLY   118       3.597  38.421 -17.541  1.00  0.00              
ATOM    119  CA  THR   119       3.295  36.748 -20.902  1.00  0.00              
ATOM    120  CA  PHE   120       0.036  35.521 -22.005  1.00  0.00              
ATOM    121  CA  LYS   121      -1.820  36.995 -25.100  1.00  0.00              
ATOM    122  CA  PRO   122      -3.954  34.480 -26.998  1.00  0.00              
ATOM    123  CA  LYS   123      -5.286  36.314 -29.776  1.00  0.00              
TER                                                                             
END
