
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  123 (  123),  selected  121 , name T0382TS599_5
# Molecule2: number of CA atoms  121 (  929),  selected  121 , name T0382.pdb
# PARAMETERS: T0382TS599_5.T0382.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    56         3 - 58          4.87    24.78
  LONGEST_CONTINUOUS_SEGMENT:    56         4 - 59          4.79    24.94
  LCS_AVERAGE:     42.86

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    30         3 - 32          1.78    19.87
  LCS_AVERAGE:     17.92

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    25         8 - 32          0.80    20.49
  LCS_AVERAGE:     12.93

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  121
LCS_GDT     K       3     K       3      5   30   56     0    4    5   16   23   29   30   31   32   34   34   36   39   43   48   50   52   56   57   62 
LCS_GDT     L       4     L       4      5   30   56     3    4    5    6   27   29   30   31   32   34   36   39   42   47   52   53   56   56   57   62 
LCS_GDT     D       5     D       5      5   30   56     3   10   15   26   27   29   30   31   32   34   36   39   42   46   52   53   56   56   57   62 
LCS_GDT     L       6     L       6      5   30   56     5    5    5    8   13   18   23   31   32   34   34   36   42   46   52   53   56   56   58   64 
LCS_GDT     H       7     H       7      5   30   56     5    5    5    9   18   28   30   31   32   34   34   37   42   45   49   53   56   56   57   62 
LCS_GDT     Q       8     Q       8     25   30   56     5   13   25   26   27   29   30   31   32   35   37   44   49   49   52   53   56   56   61   64 
LCS_GDT     M       9     M       9     25   30   56    10   21   25   26   27   29   31   37   46   48   48   48   49   50   54   56   60   66   67   68 
LCS_GDT     T      10     T      10     25   30   56    10   23   25   26   27   29   35   44   46   48   48   48   49   53   58   64   65   68   70   71 
LCS_GDT     T      11     T      11     25   30   56    10   23   25   26   27   34   41   44   46   48   48   48   50   53   58   64   65   68   70   71 
LCS_GDT     Q      12     Q      12     25   30   56    13   23   25   26   27   34   41   44   46   48   48   48   50   53   58   64   65   68   70   71 
LCS_GDT     D      13     D      13     25   30   56    15   23   25   26   27   29   41   44   46   48   48   48   49   53   58   64   65   67   69   70 
LCS_GDT     L      14     L      14     25   30   56    15   23   25   26   27   30   41   44   46   48   48   48   49   53   58   64   65   67   69   70 
LCS_GDT     V      15     V      15     25   30   56    15   23   25   26   27   34   41   44   46   48   48   48   49   53   58   64   65   67   69   70 
LCS_GDT     A      16     A      16     25   30   56    15   23   25   26   27   34   41   44   46   48   48   48   49   53   55   61   62   65   69   70 
LCS_GDT     L      17     L      17     25   30   56    15   23   25   26   27   34   41   44   46   48   48   48   49   50   54   56   58   62   65   67 
LCS_GDT     F      18     F      18     25   30   56    15   23   25   26   27   34   41   44   46   48   48   48   49   50   52   55   57   60   61   65 
LCS_GDT     A      19     A      19     25   30   56    15   23   25   26   27   34   41   44   46   48   48   48   49   50   52   53   56   56   57   62 
LCS_GDT     K      20     K      20     25   30   56    15   23   25   26   27   34   41   44   46   48   48   48   49   50   52   53   56   56   57   62 
LCS_GDT     V      21     V      21     25   30   56    10   23   25   26   27   34   41   44   46   48   48   48   49   50   52   53   56   56   57   62 
LCS_GDT     T      22     T      22     25   30   56    15   23   25   26   27   34   41   44   46   48   48   48   49   50   52   53   56   56   57   62 
LCS_GDT     V      23     V      23     25   30   56    15   23   25   26   27   34   41   44   46   48   48   48   49   50   52   53   56   56   57   62 
LCS_GDT     E      24     E      24     25   30   56    15   23   25   26   27   34   41   44   46   48   48   48   49   50   52   53   56   56   57   62 
LCS_GDT     Q      25     Q      25     25   30   56    15   23   25   26   27   34   41   44   46   48   48   48   49   50   52   53   56   56   57   62 
LCS_GDT     D      26     D      26     25   30   56    15   23   25   26   27   34   41   44   46   48   48   48   49   50   52   53   56   56   57   62 
LCS_GDT     D      27     D      27     25   30   56    14   23   25   26   27   34   41   44   46   48   48   48   49   50   52   53   56   56   57   62 
LCS_GDT     A      28     A      28     25   30   56    15   23   25   26   27   34   41   44   46   48   48   48   49   50   52   53   56   56   57   62 
LCS_GDT     L      29     L      29     25   30   56    15   23   25   26   27   29   41   44   46   48   48   48   49   50   52   53   56   56   57   62 
LCS_GDT     L      30     L      30     25   30   56     9   23   25   26   27   33   41   44   46   48   48   48   49   50   52   53   56   56   57   62 
LCS_GDT     G      31     G      31     25   30   56     9   23   25   26   27   34   41   44   46   48   48   48   49   50   52   53   56   56   57   62 
LCS_GDT     N      32     N      32     25   30   56    15   23   25   26   27   34   41   44   46   48   48   48   49   50   52   53   56   56   57   62 
LCS_GDT     Q      33     Q      33      3   27   56     3    3    5    9   20   28   41   44   46   48   48   48   49   50   52   53   56   56   57   62 
LCS_GDT     I      34     I      34     22   26   56    13   21   22   22   23   34   41   44   46   48   48   48   49   50   52   53   56   56   57   62 
LCS_GDT     S      35     S      35     22   26   56    16   21   22   22   23   33   41   44   46   48   48   48   49   50   52   53   56   56   57   62 
LCS_GDT     R      36     R      36     22   26   56    16   21   22   22   23   28   41   44   46   48   48   48   49   50   52   53   56   56   57   62 
LCS_GDT     F      37     F      37     22   26   56    16   21   22   22   23   34   41   44   46   48   48   48   49   50   52   53   56   56   57   62 
LCS_GDT     N      38     N      38     22   26   56    16   21   22   22   23   34   41   44   46   48   48   48   49   50   52   53   56   56   57   62 
LCS_GDT     R      39     R      39     22   26   56    16   21   22   22   23   34   41   44   46   48   48   48   49   50   52   53   56   56   57   62 
LCS_GDT     L      40     L      40     22   26   56    16   21   22   22   23   34   41   44   46   48   48   48   49   50   52   53   56   56   57   62 
LCS_GDT     F      41     F      41     22   26   56    16   21   22   22   23   34   41   44   46   48   48   48   49   50   52   53   56   56   57   62 
LCS_GDT     G      42     G      42     22   26   56    16   21   22   22   23   34   41   44   46   48   48   48   49   50   52   53   56   56   57   58 
LCS_GDT     V      43     V      43     22   26   56    16   21   22   22   23   34   41   44   46   48   48   48   49   50   52   53   56   56   57   62 
LCS_GDT     M      44     M      44     22   26   56    16   21   22   22   23   34   41   44   46   48   48   48   49   50   52   53   56   56   57   62 
LCS_GDT     A      45     A      45     22   26   56    16   21   22   22   23   34   41   44   46   48   48   48   49   50   52   53   56   56   57   58 
LCS_GDT     E      46     E      46     22   26   56    16   21   22   22   23   34   41   44   46   48   48   48   49   50   52   53   56   56   57   58 
LCS_GDT     I      47     I      47     22   26   56    16   21   22   22   23   34   41   44   46   48   48   48   49   50   52   53   56   56   61   63 
LCS_GDT     A      48     A      48     22   26   56    16   21   22   22   23   31   41   44   46   48   48   48   49   50   52   53   56   58   61   64 
LCS_GDT     D      49     D      49     22   26   56    16   21   22   22   23   27   41   44   46   48   48   48   49   50   51   53   56   60   61   65 
LCS_GDT     E      50     E      50     22   26   56    16   21   22   22   23   34   41   44   46   48   48   48   49   50   52   54   57   60   64   66 
LCS_GDT     L      51     L      51     22   26   56    16   21   22   22   23   34   41   44   46   48   48   48   49   53   58   64   65   67   69   70 
LCS_GDT     K      52     K      52     22   26   56    12   21   22   22   23   24   28   44   46   48   48   48   49   53   56   61   65   67   69   70 
LCS_GDT     A      53     A      53     22   26   56    12   21   22   22   23   24   29   44   46   48   48   48   48   53   58   64   65   67   69   71 
LCS_GDT     R      54     R      54     22   26   56    16   21   22   22   23   34   41   44   46   48   48   48   49   53   58   64   65   68   70   71 
LCS_GDT     D      55     D      55     22   26   56     3   14   22   22   23   34   41   44   46   48   48   48   50   53   58   64   65   68   70   71 
LCS_GDT     G      56     G      56     10   26   56     3    4   14   22   23   27   39   43   46   48   48   48   49   53   58   62   65   68   70   71 
LCS_GDT     D      57     D      57      4   12   56     3    4    4    7    8   13   21   26   33   40   42   46   50   53   58   62   65   68   70   71 
LCS_GDT     Q      58     Q      58      6   15   56     3    4    7   12   16   29   30   31   33   39   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     R      59     R      59      6   15   56     3    4    8   12   14   17   21   26   30   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     T      60     T      60      6   15   55     4    4    8   12   14   17   20   25   29   36   42   45   49   53   56   59   64   68   70   71 
LCS_GDT     A      61     A      61      6   15   54     4    4    8   12   14   19   21   25   29   36   42   45   50   53   56   59   64   68   70   71 
LCS_GDT     L      62     L      62      7   15   49     4    5    9   12   14   17   21   27   29   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     L      63     L      63      7   15   49     4    5    9   12   14   18   21   25   29   36   42   45   49   53   56   59   64   68   70   71 
LCS_GDT     S      64     S      64      8   15   49     3    5    9   12   14   19   21   25   29   32   35   41   45   52   56   59   61   65   68   71 
LCS_GDT     L      65     L      65      9   15   49     3    6    9   12   14   19   21   25   29   36   42   45   49   53   56   59   64   68   70   71 
LCS_GDT     F      66     F      66      9   15   49     4    7    9   11   14   19   21   25   29   36   42   45   49   53   56   59   64   68   70   71 
LCS_GDT     E      67     E      67      9   15   49     3    7    9   11   13   16   20   23   29   31   35   38   42   48   50   54   59   63   66   68 
LCS_GDT     Y      68     Y      68      9   15   49     4    7    9   12   14   19   21   25   29   32   36   41   45   52   56   59   64   68   70   71 
LCS_GDT     P      69     P      69      9   15   49     4    7    9   11   13   19   21   25   29   32   35   39   45   50   56   59   64   68   70   71 
LCS_GDT     N      70     N      70      9   15   49     4    7    9   12   14   19   21   25   30   37   42   45   50   53   58   64   65   68   70   71 
LCS_GDT     M      71     M      71      9   15   49     3    7    9   12   14   17   20   22   29   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     Q      72     Q      72      9   15   49     3    7    8   11   14   17   20   28   31   37   41   46   50   53   58   64   65   68   70   71 
LCS_GDT     V      73     V      73      9   14   49     3    5    8    9   13   18   22   28   31   37   41   46   50   53   58   64   65   68   70   71 
LCS_GDT     R      74     R      74      9   10   49     7   10   10   11   14   19   21   25   30   37   42   45   50   53   58   64   65   68   70   71 
LCS_GDT     L      75     L      75      9   10   49     8   10   15   20   20   21   24   28   31   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     Q      76     Q      76      9   10   49     8   14   18   20   20   21   22   27   30   36   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     A      77     A      77      9   10   49     8   10   10   11   14   19   22   27   30   36   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     A      78     A      78      9   10   49     8   10   10   11   14   19   24   27   30   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     K      79     K      79      9   10   49     8   10   16   18   19   20   24   28   31   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     L      80     L      80      9   10   49     8   10   16   18   19   20   24   27   30   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     T      81     T      81      9   10   49     8   10   10   11   14   19   21   25   30   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     L      82     L      82      9   10   49     8   10   10   11   14   19   21   25   30   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     A      83     A      83      4   10   49     3    3   16   24   25   28   29   30   32   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     V      84     V      84      3   21   49     3    3    4    7    9   19   24   27   29   32   36   46   50   53   58   64   65   68   70   71 
LCS_GDT     A      85     A      85     18   21   49    10   16   18   20   20   21   24   27   29   32   36   46   49   53   58   64   65   68   70   71 
LCS_GDT     P      86     P      86     18   21   49    12   16   18   20   20   21   24   27   29   32   36   46   50   53   58   64   65   68   70   71 
LCS_GDT     V      87     V      87     18   21   49    13   16   18   20   20   21   24   28   31   32   39   46   50   53   58   64   65   68   70   71 
LCS_GDT     K      88     K      88     18   21   49    13   16   18   20   20   21   24   28   31   34   39   46   50   53   58   64   65   68   70   71 
LCS_GDT     A      89     A      89     18   21   49    13   16   18   20   20   21   24   28   31   37   41   46   50   53   58   64   65   68   70   71 
LCS_GDT     R      90     R      90     18   21   49    13   16   18   20   20   21   24   28   31   37   41   46   50   53   58   64   65   68   70   71 
LCS_GDT     E      91     E      91     18   21   49    13   16   18   20   20   21   24   28   31   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     Q      92     Q      92     18   21   49    13   16   18   20   20   21   24   28   31   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     L      93     L      93     18   21   49    13   16   18   20   20   21   24   28   31   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     E      94     E      94     18   21   49    13   16   18   20   20   21   24   27   29   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     A      95     A      95     18   21   49    13   16   18   20   20   21   24   27   29   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     I      96     I      96     18   21   49    13   16   18   20   20   21   24   27   29   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     V      97     V      97     18   21   49    13   16   18   20   20   21   24   27   29   36   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     S      98     S      98     18   21   49    13   16   18   20   20   21   24   27   29   36   42   46   50   53   58   62   65   68   70   71 
LCS_GDT     S      99     S      99     18   21   49    13   16   18   20   20   21   24   27   29   34   40   43   50   53   57   62   65   68   70   71 
LCS_GDT     K     100     K     100     18   21   49     9   16   18   20   20   21   24   27   29   32   36   41   45   51   56   61   65   67   69   71 
LCS_GDT     W     101     W     101     18   21   49     3   15   18   20   20   21   24   27   29   34   39   46   50   53   58   64   65   68   70   71 
LCS_GDT     F     102     F     102     18   21   49     3    4   16   20   20   21   24   27   29   34   40   46   50   53   58   64   65   68   70   71 
LCS_GDT     P     103     P     103      5   21   49     2    4    5    6    9   11   19   22   28   34   40   46   50   53   58   64   65   68   70   71 
LCS_GDT     Q     104     Q     104      3   21   49     2    3    6    9   12   21   24   28   31   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     A     105     A     105      3    5   49     1    3    3    6   11   16   18   22   28   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     G     106     G     106      3   13   49     3    3    3    5   10   16   18   28   31   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     D     107     D     107     13   17   49    10   12   12   13   14   18   22   28   31   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     A     108     A     108     13   17   49    11   12   12   13   14   18   22   28   31   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     G     109     G     109     13   17   49    11   12   12   13   14   18   22   28   31   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     M     110     M     110     13   17   48    11   12   12   13   14   18   22   28   31   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     C     111     C     111     13   17   48    11   12   12   13   14   18   22   28   31   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     L     112     L     112     13   17   48    11   12   12   13   14   18   22   28   31   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     D     113     D     113     13   17   48    11   12   12   13   14   18   22   28   31   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     L     114     L     114     13   17   48    11   12   12   13   14   18   22   28   31   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     L     115     L     115     13   17   48    11   12   12   13   14   18   22   28   31   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     D     116     D     116     13   17   48    11   12   12   13   14   18   22   28   31   37   42   46   50   53   58   64   65   68   70   71 
LCS_GDT     D     117     D     117     13   17   48    11   12   12   13   14   18   22   28   31   37   39   44   49   53   58   64   65   68   70   71 
LCS_GDT     G     118     G     118     13   17   44    11   12   12   13   14   18   22   28   31   37   39   44   49   53   58   64   65   68   70   71 
LCS_GDT     T     119     T     119     13   17   42     3    4   11   13   14   16   20   26   31   34   39   42   48   53   58   64   65   68   70   71 
LCS_GDT     F     120     F     120      5   17   38     3    4    6   13   14   16   21   28   31   34   39   42   49   53   58   64   65   68   70   71 
LCS_GDT     K     121     K     121      5   17   38     3    4    6    7    8   16   21   26   31   34   37   42   49   53   58   64   65   68   70   71 
LCS_GDT     P     122     P     122      5   17   38     3    4    6    7    8   13   21   27   31   34   39   42   48   53   58   64   65   68   70   71 
LCS_GDT     K     123     K     123      5   17   38     3    4   10   13   14   16   21   28   31   34   39   42   48   53   58   64   65   68   70   71 
LCS_AVERAGE  LCS_A:  24.57  (  12.93   17.92   42.86 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     16     23     25     26     27     34     41     44     46     48     48     48     50     53     58     64     65     68     70     71 
GDT PERCENT_CA  13.22  19.01  20.66  21.49  22.31  28.10  33.88  36.36  38.02  39.67  39.67  39.67  41.32  43.80  47.93  52.89  53.72  56.20  57.85  58.68
GDT RMS_LOCAL    0.30   0.52   0.80   1.01   1.20   2.50   2.70   2.82   2.92   3.11   3.11   3.11   4.61   4.65   4.99   5.47   5.53   5.73   5.94   6.05
GDT RMS_ALL_CA  27.03  21.25  20.49  20.25  20.35  26.77  26.82  26.99  27.03  26.80  26.80  26.80  21.59  21.56  21.64  20.47  20.41  22.10  22.46  22.76

#      Molecule1      Molecule2       DISTANCE
LGA    K       3      K       3         18.794
LGA    L       4      L       4         14.163
LGA    D       5      D       5         15.582
LGA    L       6      L       6         12.958
LGA    H       7      H       7         15.733
LGA    Q       8      Q       8         12.710
LGA    M       9      M       9          7.508
LGA    T      10      T      10          5.197
LGA    T      11      T      11          3.103
LGA    Q      12      Q      12          2.500
LGA    D      13      D      13          3.968
LGA    L      14      L      14          3.714
LGA    V      15      V      15          2.441
LGA    A      16      A      16          2.623
LGA    L      17      L      17          3.075
LGA    F      18      F      18          3.017
LGA    A      19      A      19          2.970
LGA    K      20      K      20          2.797
LGA    V      21      V      21          2.445
LGA    T      22      T      22          2.833
LGA    V      23      V      23          3.157
LGA    E      24      E      24          2.521
LGA    Q      25      Q      25          2.530
LGA    D      26      D      26          3.229
LGA    D      27      D      27          2.745
LGA    A      28      A      28          1.997
LGA    L      29      L      29          3.275
LGA    L      30      L      30          3.499
LGA    G      31      G      31          1.897
LGA    N      32      N      32          2.771
LGA    Q      33      Q      33          3.833
LGA    I      34      I      34          2.120
LGA    S      35      S      35          2.962
LGA    R      36      R      36          3.489
LGA    F      37      F      37          2.576
LGA    N      38      N      38          1.997
LGA    R      39      R      39          2.643
LGA    L      40      L      40          2.716
LGA    F      41      F      41          2.019
LGA    G      42      G      42          2.105
LGA    V      43      V      43          2.294
LGA    M      44      M      44          2.406
LGA    A      45      A      45          2.531
LGA    E      46      E      46          2.290
LGA    I      47      I      47          2.154
LGA    A      48      A      48          3.161
LGA    D      49      D      49          3.291
LGA    E      50      E      50          2.168
LGA    L      51      L      51          2.862
LGA    K      52      K      52          4.410
LGA    A      53      A      53          3.982
LGA    R      54      R      54          2.567
LGA    D      55      D      55          2.480
LGA    G      56      G      56          5.812
LGA    D      57      D      57          9.912
LGA    Q      58      Q      58          9.857
LGA    R      59      R      59         12.864
LGA    T      60      T      60         16.695
LGA    A      61      A      61         17.911
LGA    L      62      L      62         19.402
LGA    L      63      L      63         22.794
LGA    S      64      S      64         25.633
LGA    L      65      L      65         27.951
LGA    F      66      F      66         30.347
LGA    E      67      E      67         33.682
LGA    Y      68      Y      68         34.660
LGA    P      69      P      69         39.658
LGA    N      70      N      70         39.644
LGA    M      71      M      71         40.162
LGA    Q      72      Q      72         36.557
LGA    V      73      V      73         32.787
LGA    R      74      R      74         36.752
LGA    L      75      L      75         36.603
LGA    Q      76      Q      76         33.443
LGA    A      77      A      77         30.982
LGA    A      78      A      78         30.982
LGA    K      79      K      79         29.399
LGA    L      80      L      80         26.013
LGA    T      81      T      81         24.635
LGA    L      82      L      82         25.200
LGA    A      83      A      83         22.451
LGA    V      84      V      84         25.066
LGA    A      85      A      85         29.546
LGA    P      86      P      86         34.733
LGA    V      87      V      87         37.930
LGA    K      88      K      88         33.978
LGA    A      89      A      89         33.692
LGA    R      90      R      90         39.320
LGA    E      91      E      91         39.173
LGA    Q      92      Q      92         35.584
LGA    L      93      L      93         39.310
LGA    E      94      E      94         43.490
LGA    A      95      A      95         40.432
LGA    I      96      I      96         39.998
LGA    V      97      V      97         45.980
LGA    S      98      S      98         46.962
LGA    S      99      S      99         43.320
LGA    K     100      K     100         47.651
LGA    W     101      W     101         44.399
LGA    F     102      F     102         47.363
LGA    P     103      P     103         45.036
LGA    Q     104      Q     104         45.937
LGA    A     105      A     105         49.044
LGA    G     106      G     106         48.203
LGA    D     107      D     107         45.779
LGA    A     108      A     108         44.149
LGA    G     109      G     109         48.576
LGA    M     110      M     110         46.921
LGA    C     111      C     111         40.882
LGA    L     112      L     112         42.352
LGA    D     113      D     113         45.408
LGA    L     114      L     114         40.887
LGA    L     115      L     115         37.087
LGA    D     116      D     116         40.901
LGA    D     117      D     117         40.751
LGA    G     118      G     118         35.004
LGA    T     119      T     119         35.017
LGA    F     120      F     120         29.756
LGA    K     121      K     121         27.139
LGA    P     122      P     122         20.632
LGA    K     123      K     123         16.673

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  123  121    4.0     44    2.82    32.438    28.455     1.509

LGA_LOCAL      RMSD =  2.816  Number of atoms =   44  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 27.104  Number of atoms =  121 
Std_ALL_ATOMS  RMSD = 14.679  (standard rmsd on all 121 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.779074 * X  +  -0.095172 * Y  +  -0.619666 * Z  +  -6.303284
  Y_new =  -0.335107 * X  +  -0.772145 * Y  +   0.539904 * Z  +  35.480751
  Z_new =  -0.529856 * X  +   0.628279 * Y  +   0.569665 * Z  + -10.893350 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.834289   -2.307304  [ DEG:    47.8012   -132.1988 ]
  Theta =   0.558431    2.583162  [ DEG:    31.9957    148.0043 ]
  Phi   =  -2.735380    0.406212  [ DEG:  -156.7257     23.2743 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0382TS599_5                                  
REMARK     2: T0382.pdb                                     
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0382TS599_5.T0382.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  123  121   4.0   44   2.82  28.455    14.68
REMARK  ---------------------------------------------------------- 
MOLECULE T0382TS599_5
PFRMAT TS                                                                       
TARGET T0382                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1     -12.570  28.777  -6.283  1.00  0.00              
ATOM      2  CA  SER     2     -11.069  25.342  -7.508  1.00  0.00              
ATOM      3  CA  LYS     3     -10.831  24.387 -11.183  1.00  0.00              
ATOM      4  CA  LEU     4     -12.429  28.180 -12.034  1.00  0.00              
ATOM      5  CA  ASP     5     -14.853  27.303 -14.803  1.00  0.00              
ATOM      6  CA  LEU     6     -14.699  29.933 -17.592  1.00  0.00              
ATOM      7  CA  HIS     7     -18.091  29.179 -19.131  1.00  0.00              
ATOM      8  CA  GLN     8     -19.984  29.874 -15.890  1.00  0.00              
ATOM      9  CA  MET     9     -18.333  33.058 -14.800  1.00  0.00              
ATOM     10  CA  THR    10     -20.009  36.429 -15.202  1.00  0.00              
ATOM     11  CA  THR    11     -18.063  39.417 -13.831  1.00  0.00              
ATOM     12  CA  GLN    12     -20.692  40.059 -11.115  1.00  0.00              
ATOM     13  CA  ASP    13     -20.466  36.414  -9.986  1.00  0.00              
ATOM     14  CA  LEU    14     -16.675  36.660  -9.691  1.00  0.00              
ATOM     15  CA  VAL    15     -16.948  39.864  -7.637  1.00  0.00              
ATOM     16  CA  ALA    16     -19.512  38.234  -5.292  1.00  0.00              
ATOM     17  CA  LEU    17     -17.226  35.194  -4.805  1.00  0.00              
ATOM     18  CA  PHE    18     -14.245  37.510  -4.098  1.00  0.00              
ATOM     19  CA  ALA    19     -16.342  39.445  -1.543  1.00  0.00              
ATOM     20  CA  LYS    20     -17.418  36.208   0.112  1.00  0.00              
ATOM     21  CA  VAL    21     -13.729  35.236   0.470  1.00  0.00              
ATOM     22  CA  THR    22     -12.919  38.650   1.979  1.00  0.00              
ATOM     23  CA  VAL    23     -15.780  38.348   4.519  1.00  0.00              
ATOM     24  CA  GLU    24     -14.682  34.811   5.539  1.00  0.00              
ATOM     25  CA  GLN    25     -11.067  35.993   6.016  1.00  0.00              
ATOM     26  CA  ASP    26     -12.169  38.633   8.558  1.00  0.00              
ATOM     27  CA  ASP    27     -13.873  36.078  10.796  1.00  0.00              
ATOM     28  CA  ALA    28     -10.972  33.590  10.545  1.00  0.00              
ATOM     29  CA  LEU    29      -8.373  36.123  11.646  1.00  0.00              
ATOM     30  CA  LEU    30     -10.219  37.117  14.842  1.00  0.00              
ATOM     31  CA  GLY    31     -10.673  33.482  15.823  1.00  0.00              
ATOM     32  CA  ASN    32      -7.165  32.361  15.105  1.00  0.00              
ATOM     33  CA  GLN    33      -5.199  34.901  17.042  1.00  0.00              
ATOM     34  CA  ILE    34      -2.301  35.992  14.935  1.00  0.00              
ATOM     35  CA  SER    35       0.564  35.419  12.564  1.00  0.00              
ATOM     36  CA  ARG    36      -1.190  33.332   9.893  1.00  0.00              
ATOM     37  CA  PHE    37      -4.202  35.567  10.430  1.00  0.00              
ATOM     38  CA  ASN    38      -2.195  38.657   9.384  1.00  0.00              
ATOM     39  CA  ARG    39      -1.114  36.811   6.250  1.00  0.00              
ATOM     40  CA  LEU    40      -4.653  35.763   5.408  1.00  0.00              
ATOM     41  CA  PHE    41      -5.830  39.385   5.996  1.00  0.00              
ATOM     42  CA  GLY    42      -3.357  40.706   3.606  1.00  0.00              
ATOM     43  CA  VAL    43      -4.404  38.243   0.876  1.00  0.00              
ATOM     44  CA  MET    44      -8.077  38.875   1.301  1.00  0.00              
ATOM     45  CA  ALA    45      -7.536  42.585   1.236  1.00  0.00              
ATOM     46  CA  GLU    46      -5.469  42.395  -1.923  1.00  0.00              
ATOM     47  CA  ILE    47      -8.086  40.310  -3.782  1.00  0.00              
ATOM     48  CA  ALA    48     -10.950  42.519  -2.754  1.00  0.00              
ATOM     49  CA  ASP    49      -9.088  45.566  -3.834  1.00  0.00              
ATOM     50  CA  GLU    50      -8.231  44.064  -7.172  1.00  0.00              
ATOM     51  CA  LEU    51     -11.774  42.895  -7.758  1.00  0.00              
ATOM     52  CA  LYS    52     -13.354  46.234  -6.918  1.00  0.00              
ATOM     53  CA  ALA    53     -11.004  48.131  -9.142  1.00  0.00              
ATOM     54  CA  ARG    54     -11.537  45.806 -12.168  1.00  0.00              
ATOM     55  CA  ASP    55     -12.970  47.957 -14.774  1.00  0.00              
ATOM     56  CA  GLY    56     -15.967  46.714 -16.684  1.00  0.00              
ATOM     57  CA  ASP    57     -13.884  46.679 -19.926  1.00  0.00              
ATOM     58  CA  GLN    58     -11.311  44.349 -18.319  1.00  0.00              
ATOM     59  CA  ARG    59     -14.129  41.875 -17.534  1.00  0.00              
ATOM     60  CA  THR    60     -15.008  41.832 -21.245  1.00  0.00              
ATOM     61  CA  ALA    61     -11.375  41.124 -22.197  1.00  0.00              
ATOM     62  CA  LEU    62     -11.208  38.262 -19.674  1.00  0.00              
ATOM     63  CA  LEU    63     -14.444  36.866 -21.096  1.00  0.00              
ATOM     64  CA  SER    64     -12.768  36.951 -24.505  1.00  0.00              
ATOM     65  CA  LEU    65      -9.823  34.872 -23.283  1.00  0.00              
ATOM     66  CA  PHE    66     -12.235  32.294 -21.896  1.00  0.00              
ATOM     67  CA  GLU    67     -13.771  31.958 -25.355  1.00  0.00              
ATOM     68  CA  TYR    68     -10.226  30.825 -26.398  1.00  0.00              
ATOM     69  CA  PRO    69     -10.469  27.551 -28.002  1.00  0.00              
ATOM     70  CA  ASN    70      -7.863  25.603 -26.141  1.00  0.00              
ATOM     71  CA  MET    71     -10.230  23.540 -23.871  1.00  0.00              
ATOM     72  CA  GLN    72      -7.521  23.323 -21.179  1.00  0.00              
ATOM     73  CA  VAL    73      -5.440  26.291 -20.805  1.00  0.00              
ATOM     74  CA  ARG    74      -3.427  28.662 -22.753  1.00  0.00              
ATOM     75  CA  LEU    75      -0.634  30.472 -20.967  1.00  0.00              
ATOM     76  CA  GLN    76      -0.004  33.716 -22.820  1.00  0.00              
ATOM     77  CA  ALA    77      -3.755  34.301 -23.294  1.00  0.00              
ATOM     78  CA  ALA    78      -4.659  33.852 -19.653  1.00  0.00              
ATOM     79  CA  LYS    79      -1.792  35.838 -18.249  1.00  0.00              
ATOM     80  CA  LEU    80      -2.286  38.802 -20.610  1.00  0.00              
ATOM     81  CA  THR    81      -6.022  39.099 -19.941  1.00  0.00              
ATOM     82  CA  LEU    82      -5.183  39.034 -16.174  1.00  0.00              
ATOM     83  CA  ALA    83      -2.376  40.752 -14.445  1.00  0.00              
ATOM     84  CA  VAL    84       1.301  40.571 -15.301  1.00  0.00              
ATOM     85  CA  ALA    85       3.980  40.739 -12.683  1.00  0.00              
ATOM     86  CA  PRO    86       6.726  38.090 -13.084  1.00  0.00              
ATOM     87  CA  VAL    87       6.457  36.336  -9.689  1.00  0.00              
ATOM     88  CA  LYS    88       2.653  36.232  -9.982  1.00  0.00              
ATOM     89  CA  ALA    89       2.782  35.042 -13.613  1.00  0.00              
ATOM     90  CA  ARG    90       5.006  32.079 -12.603  1.00  0.00              
ATOM     91  CA  GLU    91       2.546  31.343  -9.847  1.00  0.00              
ATOM     92  CA  GLN    92      -0.496  31.412 -12.184  1.00  0.00              
ATOM     93  CA  LEU    93       1.215  29.076 -14.617  1.00  0.00              
ATOM     94  CA  GLU    94       2.036  26.706 -11.804  1.00  0.00              
ATOM     95  CA  ALA    95      -1.567  26.739 -10.537  1.00  0.00              
ATOM     96  CA  ILE    96      -2.902  26.007 -14.047  1.00  0.00              
ATOM     97  CA  VAL    97      -0.466  23.187 -14.481  1.00  0.00              
ATOM     98  CA  SER    98      -1.488  21.696 -11.082  1.00  0.00              
ATOM     99  CA  SER    99      -5.247  21.924 -11.748  1.00  0.00              
ATOM    100  CA  LYS   100      -5.069  19.753 -14.872  1.00  0.00              
ATOM    101  CA  TRP   101      -6.036  22.336 -17.422  1.00  0.00              
ATOM    102  CA  PHE   102      -3.485  21.574 -20.203  1.00  0.00              
ATOM    103  CA  PRO   103      -0.877  24.269 -20.177  1.00  0.00              
ATOM    104  CA  GLN   104      -0.379  24.946 -23.835  1.00  0.00              
ATOM    105  CA  ALA   105       0.379  28.320 -25.158  1.00  0.00              
ATOM    106  CA  GLY   106       2.790  30.794 -23.738  1.00  0.00              
ATOM    107  CA  ASP   107       6.331  29.809 -23.033  1.00  0.00              
ATOM    108  CA  ALA   108       7.373  30.755 -19.546  1.00  0.00              
ATOM    109  CA  GLY   109      10.510  32.763 -20.404  1.00  0.00              
ATOM    110  CA  MET   110       8.736  34.696 -23.213  1.00  0.00              
ATOM    111  CA  CYS   111       5.792  35.492 -20.957  1.00  0.00              
ATOM    112  CA  LEU   112       8.084  36.745 -18.186  1.00  0.00              
ATOM    113  CA  ASP   113       9.836  38.986 -20.754  1.00  0.00              
ATOM    114  CA  LEU   114       6.479  40.367 -21.990  1.00  0.00              
ATOM    115  CA  LEU   115       5.468  41.057 -18.393  1.00  0.00              
ATOM    116  CA  ASP   116       8.713  42.902 -17.714  1.00  0.00              
ATOM    117  CA  ASP   117       7.805  44.940 -20.811  1.00  0.00              
ATOM    118  CA  GLY   118       4.583  46.225 -19.637  1.00  0.00              
ATOM    119  CA  THR   119       2.081  44.389 -21.758  1.00  0.00              
ATOM    120  CA  PHE   120       0.230  44.222 -18.487  1.00  0.00              
ATOM    121  CA  LYS   121      -3.478  43.827 -18.569  1.00  0.00              
ATOM    122  CA  PRO   122      -5.840  44.995 -16.054  1.00  0.00              
ATOM    123  CA  LYS   123      -6.031  43.351 -12.875  1.00  0.00              
TER                                                                             
END
