
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  135 (  135),  selected  135 , name T0385TS168_1-D1
# Molecule2: number of CA atoms  135 ( 1000),  selected  135 , name T0385_D1.pdb
# PARAMETERS: T0385TS168_1-D1.T0385_D1.pdb  -3  -ie  -o1  -sda  -d:4  
# FIXED Atom-Atom correspondence
# GDT and LCS analysis 

LCS - RMSD CUTOFF   5.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    42        46 - 87          4.94    26.31
  LONGEST_CONTINUOUS_SEGMENT:    42        47 - 88          4.94    26.30
  LCS_AVERAGE:     27.14

LCS - RMSD CUTOFF   2.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    28        95 - 122         1.92    22.93
  LCS_AVERAGE:     15.33

LCS - RMSD CUTOFF   1.00      length       segment         l_RMS    g_RMS
  LONGEST_CONTINUOUS_SEGMENT:    26        50 - 75          0.94    20.41
  LONGEST_CONTINUOUS_SEGMENT:    26        96 - 121         0.76    22.74
  LCS_AVERAGE:     13.17

LCS_GDT    MOLECULE-1    MOLECULE-2    LENGTH_OF_THE
LCS_GDT     RESIDUE       RESIDUE         CONTINUOUS
LCS_GDT   NAME NUMBER   NAME NUMBER          SEGMENT     GLOBAL DISTANCE TEST - GDT_DATA_COLUMNS                             NUMBER OF THE RESIDUES:  135
LCS_GDT     S      17     S      17      3    4   33     3   12   17   27   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     E      18     E      18      3    4   33     3    3    3    7   11   19   26   34   38   43   49   51   54   54   55   57   59   61   63   65 
LCS_GDT     G      19     G      19      3    4   33     3    3    4    6    8   12   18   27   33   39   41   49   51   54   55   57   59   61   63   65 
LCS_GDT     S      20     S      20      3   20   33     3    4    9   12   22   25   31   41   45   47   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     A      21     A      21     18   20   33    18   18   19   28   34   38   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     D      22     D      22     18   20   33    18   18   21   28   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     N      23     N      23     18   20   33    18   18   21   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     A      24     A      24     18   20   33    18   18   21   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     A      25     A      25     18   20   33    18   18   21   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     L      26     L      26     18   20   33    18   18   21   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     C      27     C      27     18   20   33    18   18   20   27   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     D      28     D      28     18   20   33    18   18   20   27   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     A      29     A      29     18   20   33    18   18   19   27   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     L      30     L      30     18   20   33    18   18   19   25   32   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     A      31     A      31     18   20   33    18   18   19   23   32   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     V      32     V      32     18   20   33    18   18   19   24   32   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     E      33     E      33     18   20   33    18   18   19   23   29   35   37   43   46   48   50   51   54   54   55   58   59   61   64   66 
LCS_GDT     H      34     H      34     18   20   33    18   18   19   23   28   30   37   42   46   48   50   51   54   54   55   58   59   61   64   65 
LCS_GDT     A      35     A      35     18   20   33    18   18   19   23   29   35   40   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     T      36     T      36     18   20   33    18   18   19   23   29   35   37   43   46   48   50   51   54   54   55   58   59   61   64   65 
LCS_GDT     I      37     I      37     18   20   33    18   18   24   26   27   30   35   42   45   48   50   51   54   54   55   58   59   61   64   66 
LCS_GDT     Y      38     Y      38     18   20   33    18   18   19   23   28   30   35   42   45   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     G      39     G      39      3   20   33     3    3    3    7   16   26   37   41   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     Y      40     Y      40      3    4   33     0    3    3    4    4    6    7   14   23   36   47   51   54   54   55   58   59   61   63   65 
LCS_GDT     G      41     G      41      3    4   33     0    3    3    7   12   20   28   37   40   46   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     I      42     I      42      3    4   33     0    3    4    5    9   11   14   18   23   32   36   40   45   49   55   58   59   61   63   65 
LCS_GDT     V      43     V      43      3    4   33     1    3    5    6    6   11   13   14   18   26   27   35   42   45   52   55   57   61   63   65 
LCS_GDT     S      44     S      44      3    7   33     1    3    3    3    6    9   13   20   23   28   35   40   45   47   52   55   59   61   63   65 
LCS_GDT     A      45     A      45      5    7   34     3    4    5    6    6    9   10   11   14   23   27   33   35   46   49   55   56   59   63   63 
LCS_GDT     L      46     L      46      5    7   42     3    4    6    6    7   10   10   14   19   23   35   36   39   46   49   55   56   59   63   63 
LCS_GDT     S      47     S      47      5    7   42     3    4    5    7   10   15   20   25   26   34   39   42   45   49   52   55   59   61   63   65 
LCS_GDT     P      48     P      48      5    7   42     3    3    6    6   12   14   18   29   34   42   44   49   51   54   55   57   59   61   63   65 
LCS_GDT     P      49     P      49      5    7   42     3    4    6    6   17   24   29   37   40   46   49   51   54   54   55   58   59   61   63   65 
LCS_GDT     G      50     G      50     26   27   42     3    3    6   19   29   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     V      51     V      51     26   27   42    12   25   25   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     N      52     N      52     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   62   65 
LCS_GDT     F      53     F      53     26   27   42    12   25   25   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   62   65 
LCS_GDT     L      54     L      54     26   27   42    12   25   25   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     V      55     V      55     26   27   42    14   25   25   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     A      56     A      56     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     D      57     D      57     26   27   42    12   25   25   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     A      58     A      58     26   27   42    15   25   25   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     L      59     L      59     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   66 
LCS_GDT     K      60     K      60     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   66 
LCS_GDT     Q      61     Q      61     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   66 
LCS_GDT     H      62     H      62     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   64   66 
LCS_GDT     R      63     R      63     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   64   66 
LCS_GDT     H      64     H      64     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     R      65     R      65     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     R      66     R      66     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     D      67     D      67     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     D      68     D      68     26   27   42    15   25   25   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     V      69     V      69     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     I      70     I      70     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     V      71     V      71     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     M      72     M      72     26   27   42    16   25   25   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     L      73     L      73     26   27   42    15   25   25   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     S      74     S      74     26   27   42    15   25   25   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     A      75     A      75     26   27   42    16   25   25   25   34   39   41   43   46   48   50   51   54   54   55   58   59   61   63   65 
LCS_GDT     R      76     R      76      3   27   42     2    3    4    8   19   24   28   30   31   34   38   41   50   53   54   58   59   61   62   64 
LCS_GDT     G      77     G      77      4    6   42     4    5    5    5    6    8   11   14   18   25   31   35   39   41   43   55   58   61   62   64 
LCS_GDT     V      78     V      78      4    6   42     4    5    5    5    6    8   11   14   18   25   31   35   39   41   43   44   46   46   47   52 
LCS_GDT     T      79     T      79      4    6   42     4    5    5    5    6    8   11   14   17   25   31   34   37   41   43   44   46   46   47   48 
LCS_GDT     A      80     A      80      4    6   42     4    5    5    5    7    8   11   14   18   25   31   35   39   41   43   44   46   46   47   48 
LCS_GDT     P      81     P      81      3    6   42     3    3    4    5    7    8   11   14   20   28   32   36   39   41   43   44   46   46   47   48 
LCS_GDT     I      82     I      82      3    6   42     0    5    5    5    6    8   10   14   17   25   31   34   39   41   43   44   46   46   47   48 
LCS_GDT     A      83     A      83      3    5   42     1    3    3    6    8   10   12   14   22   30   35   36   39   41   43   44   46   46   49   55 
LCS_GDT     A      84     A      84      4    5   42     1    4    5    8   10   11   12   14   22   30   35   36   39   41   43   44   46   46   47   48 
LCS_GDT     A      85     A      85      4    5   42     3    4    5    8   10   11   12   14   22   30   35   36   39   41   43   44   46   46   47   48 
LCS_GDT     G      86     G      86      4    5   42     3    4    5    8   10   11   12   14   21   30   35   36   39   41   43   44   46   46   52   62 
LCS_GDT     Y      87     Y      87      4    5   42     3    3    5    8   10   13   18   21   24   30   35   36   39   41   45   54   59   61   64   66 
LCS_GDT     Q      88     Q      88      4    5   42     3    3    4    7    8   11   14   19   27   28   30   36   37   42   50   56   59   61   64   66 
LCS_GDT     L      89     L      89      3    5   37     3    3    4    6    7    8   10   14   26   28   30   32   35   42   50   56   59   61   64   66 
LCS_GDT     P      90     P      90      4    5   37     3    4    4    5    6    7   10   15   26   31   32   33   35   42   50   56   59   61   64   66 
LCS_GDT     M      91     M      91      4    5   37     3    4    6   19   26   28   29   30   31   32   33   34   35   40   49   52   57   61   64   65 
LCS_GDT     Q      92     Q      92      4    7   37     3    4    4    6    7   11   13   24   31   32   33   34   35   37   38   38   39   41   44   59 
LCS_GDT     V      93     V      93      4    7   37     3    4    4    6    8   16   23   30   31   32   33   34   35   37   38   38   39   41   42   48 
LCS_GDT     S      94     S      94      4    7   37     3    3    4    6   11   24   26   30   31   32   33   34   35   37   38   38   39   41   42   48 
LCS_GDT     S      95     S      95      4   28   37     3    3    4    6    8   12   23   30   31   32   33   34   35   37   38   38   39   41   44   49 
LCS_GDT     A      96     A      96     26   28   37     4    7   25   26   27   28   29   30   31   32   33   34   35   40   49   53   58   61   64   66 
LCS_GDT     A      97     A      97     26   28   37     4    4   11   26   27   28   29   30   31   32   33   34   35   38   43   51   58   61   64   66 
LCS_GDT     D      98     D      98     26   28   37    17   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   59   61   64   66 
LCS_GDT     A      99     A      99     26   28   37    17   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   59   61   64   66 
LCS_GDT     A     100     A     100     26   28   37    17   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   59   61   64   66 
LCS_GDT     R     101     R     101     26   28   37    17   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   59   61   64   66 
LCS_GDT     L     102     L     102     26   28   37    17   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   59   61   64   66 
LCS_GDT     A     103     A     103     26   28   37    17   23   25   26   27   28   29   30   31   32   33   38   43   46   50   56   59   61   64   66 
LCS_GDT     V     104     V     104     26   28   37    17   23   25   26   27   28   29   30   31   32   35   39   45   46   52   56   59   61   64   66 
LCS_GDT     R     105     R     105     26   28   37    17   23   25   26   27   28   29   30   31   32   33   38   43   45   50   56   59   61   64   66 
LCS_GDT     M     106     M     106     26   28   37    17   23   25   26   27   28   29   30   31   34   38   43   48   52   54   56   59   61   64   66 
LCS_GDT     E     107     E     107     26   28   37    17   23   25   26   27   30   34   36   43   46   49   51   54   54   55   58   59   61   64   66 
LCS_GDT     N     108     N     108     26   28   37    17   23   25   26   27   28   29   30   31   34   38   41   44   49   53   56   59   61   64   66 
LCS_GDT     D     109     D     109     26   28   37    17   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   59   61   64   66 
LCS_GDT     G     110     G     110     26   28   37    17   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   59   61   64   66 
LCS_GDT     A     111     A     111     26   28   37    17   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   59   61   64   66 
LCS_GDT     T     112     T     112     26   28   37    17   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   59   61   64   66 
LCS_GDT     A     113     A     113     26   28   37    17   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   59   61   64   66 
LCS_GDT     W     114     W     114     26   28   37    17   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   59   61   64   66 
LCS_GDT     R     115     R     115     26   28   37    16   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   59   61   64   66 
LCS_GDT     A     116     A     116     26   28   37    16   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   59   61   64   66 
LCS_GDT     V     117     V     117     26   28   37    16   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   59   61   64   66 
LCS_GDT     V     118     V     118     26   28   37    16   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   59   61   64   66 
LCS_GDT     E     119     E     119     26   28   37    16   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   59   61   64   66 
LCS_GDT     H     120     H     120     26   28   37    16   23   25   26   27   28   29   30   31   32   33   34   35   42   50   56   59   61   64   66 
LCS_GDT     A     121     A     121     26   28   37     4   19   25   26   27   28   29   30   31   32   33   34   35   40   49   55   58   61   64   66 
LCS_GDT     E     122     E     122      3   28   37     3    3    4    5    6   13   25   29   30   31   32   33   35   42   50   56   59   61   64   66 
LCS_GDT     T     123     T     123      3   26   37     0    3    4    5    6    8   15   24   25   28   30   33   35   42   50   56   59   61   64   66 
LCS_GDT     A     124     A     124      3   26   37     0    3    5   10   20   24   25   25   26   28   28   29   34   42   50   56   59   61   64   66 
LCS_GDT     D     125     D     125     24   26   37    21   21   23   24   24   24   25   25   26   28   28   29   31   42   50   56   59   61   64   66 
LCS_GDT     D     126     D     126     24   26   37    21   21   23   24   24   24   25   25   26   28   28   29   35   42   50   56   59   61   64   66 
LCS_GDT     R     127     R     127     24   26   32    21   21   23   24   24   24   25   25   26   28   28   29   30   33   35   50   59   61   64   66 
LCS_GDT     V     128     V     128     24   26   31    21   21   23   24   24   24   25   25   26   28   28   29   31   34   44   56   59   61   64   66 
LCS_GDT     F     129     F     129     24   26   31    21   21   23   24   24   24   25   25   26   28   28   29   35   42   50   56   59   61   64   66 
LCS_GDT     A     130     A     130     24   26   31    21   21   23   24   24   24   25   25   26   28   28   29   32   42   50   56   59   61   64   66 
LCS_GDT     S     131     S     131     24   26   31    21   21   23   24   24   24   25   25   26   28   37   39   42   47   49   56   59   61   64   66 
LCS_GDT     T     132     T     132     24   26   31    21   21   23   24   24   24   25   25   27   33   37   39   42   50   55   58   59   61   64   66 
LCS_GDT     A     133     A     133     24   26   31    21   21   23   24   24   24   25   25   26   28   37   43   49   54   55   58   59   61   64   66 
LCS_GDT     L     134     L     134     24   26   31    21   21   23   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   64   66 
LCS_GDT     T     135     T     135     24   26   31    21   21   23   30   34   39   41   43   46   48   50   51   54   54   55   58   59   61   64   66 
LCS_GDT     E     136     E     136     24   26   31    21   21   23   24   24   24   25   28   31   35   40   45   51   54   55   58   59   61   64   66 
LCS_GDT     S     137     S     137     24   26   31    21   21   23   24   24   24   25   25   26   28   28   37   42   46   50   56   59   61   64   66 
LCS_GDT     A     138     A     138     24   26   31    21   21   23   24   24   24   25   25   26   28   30   39   43   46   52   56   59   61   64   66 
LCS_GDT     V     139     V     139     24   26   31    21   21   23   24   24   24   25   25   26   28   28   33   39   46   50   56   59   61   64   66 
LCS_GDT     M     140     M     140     24   26   31    21   21   23   24   24   24   25   25   26   28   28   29   31   42   50   56   59   61   64   66 
LCS_GDT     A     141     A     141     24   26   31    21   21   23   24   24   24   25   25   26   28   28   29   31   36   50   56   59   61   64   66 
LCS_GDT     T     142     T     142     24   26   31    21   21   23   24   24   24   25   25   26   28   28   29   34   42   50   56   59   61   64   66 
LCS_GDT     R     143     R     143     24   26   31    21   21   23   24   24   24   25   25   26   28   28   29   35   42   50   56   59   61   64   66 
LCS_GDT     W     144     W     144     24   26   31    21   21   23   24   24   24   25   25   26   28   28   29   31   37   50   56   59   61   64   66 
LCS_GDT     N     145     N     145     24   26   31    21   21   23   24   24   24   25   25   26   28   28   29   31   40   50   56   59   61   64   66 
LCS_GDT     R     146     R     146     24   26   31     3    6   23   24   24   24   25   25   26   28   28   29   31   42   50   56   59   61   64   66 
LCS_GDT     V     147     V     147     24   26   31     3   11   23   24   24   24   25   25   26   28   28   29   31   33   41   56   59   61   64   66 
LCS_GDT     L     148     L     148     24   26   31     3   10   22   24   24   24   25   25   26   28   28   29   31   33   38   48   59   61   64   66 
LCS_GDT     G     149     G     149      3   26   31     3    3    3    3    6    6    6   11   18   25   26   28   29   32   33   36   37   40   62   66 
LCS_GDT     A     150     A     150      3    3   31     3    3    3    3    4    5    6   10   13   15   22   23   29   33   34   42   54   61   64   66 
LCS_GDT     W     151     W     151      3    3   31     3    3    3    3    3    5    9   13   20   22   27   28   29   32   32   35   35   36   38   38 
LCS_AVERAGE  LCS_A:  18.54  (  13.17   15.33   27.14 )

GLOBAL_DISTANCE_TEST (the largest set of residues that can fit under specified DISTANCE_CUTOFF)
GDT DIST_CUTOFF  0.50   1.00   1.50   2.00   2.50   3.00   3.50   4.00   4.50   5.00   5.50   6.00   6.50   7.00   7.50   8.00   8.50   9.00   9.50  10.00
GDT NUMBER_CA     21     25     25     30     34     39     41     43     46     48     50     51     54     54     55     58     59     61     64     66 
GDT PERCENT_CA  15.56  18.52  18.52  22.22  25.19  28.89  30.37  31.85  34.07  35.56  37.04  37.78  40.00  40.00  40.74  42.96  43.70  45.19  47.41  48.89
GDT RMS_LOCAL    0.25   0.58   0.58   1.32   1.50   1.83   1.92   2.11   2.38   2.57   2.87   2.98   3.39   3.39   3.58   4.27   5.08   4.60   6.95   7.28
GDT RMS_ALL_CA  26.87  20.46  20.46  20.76  20.74  20.63  20.61  20.54  20.46  20.39  20.35  20.35  20.23  20.23  20.33  20.22  19.40  20.01  20.11  20.04

#      Molecule1      Molecule2       DISTANCE
LGA    S      17      S      17          2.723
LGA    E      18      E      18          9.142
LGA    G      19      G      19         11.177
LGA    S      20      S      20          6.614
LGA    A      21      A      21          3.575
LGA    D      22      D      22          2.477
LGA    N      23      N      23          1.224
LGA    A      24      A      24          2.085
LGA    A      25      A      25          1.609
LGA    L      26      L      26          1.002
LGA    C      27      C      27          1.381
LGA    D      28      D      28          1.141
LGA    A      29      A      29          1.650
LGA    L      30      L      30          2.519
LGA    A      31      A      31          2.576
LGA    V      32      V      32          2.226
LGA    E      33      E      33          3.754
LGA    H      34      H      34          4.309
LGA    A      35      A      35          3.594
LGA    T      36      T      36          4.114
LGA    I      37      I      37          5.187
LGA    Y      38      Y      38          5.093
LGA    G      39      G      39          5.006
LGA    Y      40      Y      40          7.028
LGA    G      41      G      41          7.713
LGA    I      42      I      42         14.042
LGA    V      43      V      43         15.868
LGA    S      44      S      44         15.588
LGA    A      45      A      45         18.634
LGA    L      46      L      46         20.421
LGA    S      47      S      47         16.184
LGA    P      48      P      48         12.554
LGA    P      49      P      49          9.222
LGA    G      50      G      50          2.988
LGA    V      51      V      51          1.436
LGA    N      52      N      52          3.261
LGA    F      53      F      53          3.601
LGA    L      54      L      54          1.623
LGA    V      55      V      55          1.541
LGA    A      56      A      56          2.906
LGA    D      57      D      57          2.438
LGA    A      58      A      58          0.947
LGA    L      59      L      59          1.650
LGA    K      60      K      60          2.035
LGA    Q      61      Q      61          1.385
LGA    H      62      H      62          0.733
LGA    R      63      R      63          1.063
LGA    H      64      H      64          0.812
LGA    R      65      R      65          0.694
LGA    R      66      R      66          1.072
LGA    D      67      D      67          0.757
LGA    D      68      D      68          0.980
LGA    V      69      V      69          1.360
LGA    I      70      I      70          1.341
LGA    V      71      V      71          1.599
LGA    M      72      M      72          2.213
LGA    L      73      L      73          2.433
LGA    S      74      S      74          2.381
LGA    A      75      A      75          2.964
LGA    R      76      R      76          9.267
LGA    G      77      G      77         13.756
LGA    V      78      V      78         16.815
LGA    T      79      T      79         21.321
LGA    A      80      A      80         20.432
LGA    P      81      P      81         26.955
LGA    I      82      I      82         27.365
LGA    A      83      A      83         25.061
LGA    A      84      A      84         30.488
LGA    A      85      A      85         32.637
LGA    G      86      G      86         31.784
LGA    Y      87      Y      87         30.079
LGA    Q      88      Q      88         33.578
LGA    L      89      L      89         29.808
LGA    P      90      P      90         26.532
LGA    M      91      M      91         25.205
LGA    Q      92      Q      92         24.460
LGA    V      93      V      93         24.587
LGA    S      94      S      94         30.947
LGA    S      95      S      95         32.543
LGA    A      96      A      96         33.480
LGA    A      97      A      97         33.860
LGA    D      98      D      98         30.020
LGA    A      99      A      99         24.173
LGA    A     100      A     100         22.105
LGA    R     101      R     101         22.573
LGA    L     102      L     102         19.290
LGA    A     103      A     103         13.258
LGA    V     104      V     104         13.236
LGA    R     105      R     105         15.961
LGA    M     106      M     106         11.024
LGA    E     107      E     107          6.744
LGA    N     108      N     108         11.704
LGA    D     109      D     109         15.539
LGA    G     110      G     110         12.517
LGA    A     111      A     111         13.327
LGA    T     112      T     112         19.755
LGA    A     113      A     113         22.024
LGA    W     114      W     114         21.558
LGA    R     115      R     115         24.119
LGA    A     116      A     116         29.973
LGA    V     117      V     117         31.351
LGA    V     118      V     118         31.780
LGA    E     119      E     119         36.104
LGA    H     120      H     120         40.763
LGA    A     121      A     121         41.429
LGA    E     122      E     122         42.084
LGA    T     123      T     123         38.616
LGA    A     124      A     124         33.611
LGA    D     125      D     125         29.724
LGA    D     126      D     126         25.517
LGA    R     127      R     127         21.951
LGA    V     128      V     128         20.358
LGA    F     129      F     129         18.776
LGA    A     130      A     130         13.534
LGA    S     131      S     131         10.976
LGA    T     132      T     132         10.301
LGA    A     133      A     133          9.161
LGA    L     134      L     134          2.973
LGA    T     135      T     135          2.688
LGA    E     136      E     136          8.939
LGA    S     137      S     137          9.802
LGA    A     138      A     138         10.607
LGA    V     139      V     139         12.879
LGA    M     140      M     140         18.167
LGA    A     141      A     141         19.962
LGA    T     142      T     142         21.753
LGA    R     143      R     143         25.113
LGA    W     144      W     144         29.473
LGA    N     145      N     145         31.220
LGA    R     146      R     146         34.980
LGA    V     147      V     147         39.387
LGA    L     148      L     148         40.214
LGA    G     149      G     149         44.603
LGA    A     150      A     150         48.818
LGA    W     151      W     151         52.874

#              N1   N2   DIST      N    RMSD    GDT_TS     LGA_S     LGA_Q 
SUMMARY(GDT)  135  135    4.0     43    2.11    28.889    26.170     1.945

LGA_LOCAL      RMSD =  2.110  Number of atoms =   43  DIST =   4.00
LGA_ALL_ATOMS  RMSD = 20.389  Number of atoms =  135 
Std_ALL_ATOMS  RMSD = 18.327  (standard rmsd on all 135 assigned CA atoms) 

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.629679 * X  +  -0.458946 * Y  +  -0.626796 * Z  +  29.857128
  Y_new =  -0.661220 * X  +   0.740153 * Y  +   0.122314 * Z  +  17.898687
  Z_new =   0.407790 * X  +   0.491469 * Y  +  -0.769523 * Z  +  29.820501 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.573226   -0.568366  [ DEG:   147.4350    -32.5650 ]
  Theta =  -0.420032   -2.721560  [ DEG:   -24.0661   -155.9339 ]
  Phi   =  -2.331766    0.809827  [ DEG:  -133.6003     46.3997 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0385TS168_1-D1                               
REMARK     2: T0385_D1.pdb                                  
REMARK   GDT and LCS analysis
REMARK   FIXED Atom-Atom correspondence
REMARK   LGA parameters: T0385TS168_1-D1.T0385_D1.pdb -3 -ie -o1 -sda -d:4 
REMARK   #CA        N1   N2  DIST    N   RMSD   LGA_S  RMSD_global
REMARK   SUMMARY:  135  135   4.0   43   2.11  26.170    18.33
REMARK  ---------------------------------------------------------- 
MOLECULE T0385TS168_1-D1
PFRMAT TS
TARGET T0385
MODEL 1
PARENT N/A
ATOM     17  CA  SER    17      18.639  14.876  48.177  1.00 25.00           C
ATOM     18  CA  GLU    18      15.203  13.703  47.103  1.00 25.00           C
ATOM     19  CA  GLY    19      16.322  11.594  44.142  1.00 25.00           C
ATOM     20  CA  SER    20      19.136   9.243  43.272  1.00 25.00           C
ATOM     21  CA  ALA    21      21.867  11.750  42.501  1.00 25.00           C
ATOM     22  CA  ASP    22      24.023  14.643  41.217  1.00 25.00           C
ATOM     23  CA  ASN    23      26.580  12.154  39.828  1.00 25.00           C
ATOM     24  CA  ALA    24      23.778  10.212  38.083  1.00 25.00           C
ATOM     25  CA  ALA    25      22.436  13.461  36.566  1.00 25.00           C
ATOM     26  CA  LEU    26      25.946  14.361  35.326  1.00 25.00           C
ATOM     27  CA  CYS    27      26.311  10.885  33.762  1.00 25.00           C
ATOM     28  CA  ASP    28      22.915  11.279  32.034  1.00 25.00           C
ATOM     29  CA  ALA    29      23.972  14.705  30.687  1.00 25.00           C
ATOM     30  CA  LEU    30      27.242  13.207  29.371  1.00 25.00           C
ATOM     31  CA  ALA    31      25.292  10.387  27.664  1.00 25.00           C
ATOM     32  CA  VAL    32      22.941  12.951  26.061  1.00 25.00           C
ATOM     33  CA  GLU    33      25.950  14.966  24.814  1.00 25.00           C
ATOM     34  CA  HIS    34      27.498  11.789  23.338  1.00 25.00           C
ATOM     35  CA  ALA    35      24.194  10.963  21.586  1.00 25.00           C
ATOM     36  CA  THR    36      24.035  14.514  20.159  1.00 25.00           C
ATOM     37  CA  ILE    37      27.636  14.192  18.895  1.00 25.00           C
ATOM     38  CA  TYR    38      26.786  10.840  17.250  1.00 25.00           C
ATOM     39  CA  GLY    39      28.890   7.971  18.512  1.00 25.00           C
ATOM     40  CA  TYR    40      32.631   7.379  17.890  1.00 25.00           C
ATOM     41  CA  GLY    41      35.228   8.689  15.354  1.00 25.00           C
ATOM     42  CA  ILE    42      37.476  11.549  14.114  1.00 25.00           C
ATOM     43  CA  VAL    43      38.982  14.815  15.442  1.00 25.00           C
ATOM     44  CA  SER    44      38.092  18.173  16.938  1.00 25.00           C
ATOM     45  CA  ALA    45      35.425  20.550  15.615  1.00 25.00           C
ATOM     46  CA  LEU    46      34.789  23.412  13.153  1.00 25.00           C
ATOM     47  CA  SER    47      36.173  22.134   9.854  1.00 25.00           C
ATOM     48  CA  PRO    48      34.869  19.126   7.854  1.00 25.00           C
ATOM     49  CA  PRO    49      34.530  18.437   4.115  1.00 25.00           C
ATOM     50  CA  GLY    50      30.989  17.079   4.353  1.00 25.00           C
ATOM     51  CA  VAL    51      27.997  16.344   6.628  1.00 25.00           C
ATOM     52  CA  ASN    52      29.456  12.907   7.478  1.00 25.00           C
ATOM     53  CA  PHE    53      32.833  14.517   8.299  1.00 25.00           C
ATOM     54  CA  LEU    54      31.092  17.075  10.555  1.00 25.00           C
ATOM     55  CA  VAL    55      29.212  14.258  12.341  1.00 25.00           C
ATOM     56  CA  ALA    56      32.497  12.358  12.856  1.00 25.00           C
ATOM     57  CA  ASP    57      34.128  15.516  14.282  1.00 25.00           C
ATOM     58  CA  ALA    58      31.168  15.999  16.663  1.00 25.00           C
ATOM     59  CA  LEU    59      31.457  12.354  17.802  1.00 25.00           C
ATOM     60  CA  LYS    60      35.208  12.817  18.416  1.00 25.00           C
ATOM     61  CA  GLN    61      34.508  15.982  20.456  1.00 25.00           C
ATOM     62  CA  HIS    62      31.892  14.100  22.524  1.00 25.00           C
ATOM     63  CA  ARG    63      34.392  11.270  23.158  1.00 25.00           C
ATOM     64  CA  HIS    64      37.032  13.815  24.260  1.00 25.00           C
ATOM     65  CA  ARG    65      34.506  15.442  26.635  1.00 25.00           C
ATOM     66  CA  ARG    66      33.635  12.012  28.099  1.00 25.00           C
ATOM     67  CA  ASP    67      37.354  11.257  28.607  1.00 25.00           C
ATOM     68  CA  ASP    68      37.825  14.630  30.358  1.00 25.00           C
ATOM     69  CA  VAL    69      34.834  13.894  32.632  1.00 25.00           C
ATOM     70  CA  ILE    70      36.294  10.457  33.483  1.00 25.00           C
ATOM     71  CA  VAL    71      39.670  12.068  34.304  1.00 25.00           C
ATOM     72  CA  MET    72      37.930  14.626  36.560  1.00 25.00           C
ATOM     73  CA  LEU    73      36.049  11.808  38.346  1.00 25.00           C
ATOM     74  CA  SER    74      39.335   9.909  38.861  1.00 25.00           C
ATOM     75  CA  ALA    75      40.966  13.067  40.287  1.00 25.00           C
ATOM     76  CA  ARG    76      42.236  16.323  38.911  1.00 25.00           C
ATOM     77  CA  GLY    77      41.259  19.503  37.143  1.00 25.00           C
ATOM     78  CA  VAL    78      41.707  19.422  33.364  1.00 25.00           C
ATOM     79  CA  THR    79      43.319  22.342  31.533  1.00 25.00           C
ATOM     80  CA  ALA    80      40.785  23.274  28.921  1.00 25.00           C
ATOM     81  CA  PRO    81      41.899  26.938  28.903  1.00 25.00           C
ATOM     82  CA  ILE    82      42.220  26.847  25.087  1.00 25.00           C
ATOM     83  CA  ALA    83      38.710  25.342  24.804  1.00 25.00           C
ATOM     84  CA  ALA    84      37.323  28.084  27.091  1.00 25.00           C
ATOM     85  CA  ALA    85      36.219  29.294  23.610  1.00 25.00           C
ATOM     86  CA  GLY    86      38.083  27.878  20.579  1.00 25.00           C
ATOM     87  CA  TYR    87      40.702  25.096  20.125  1.00 25.00           C
ATOM     88  CA  GLN    88      43.996  23.653  21.274  1.00 25.00           C
ATOM     89  CA  LEU    89      42.486  21.865  24.344  1.00 25.00           C
ATOM     90  CA  PRO    90      39.024  20.241  24.647  1.00 25.00           C
ATOM     91  CA  MET    91      35.473  19.113  24.244  1.00 25.00           C
ATOM     92  CA  GLN    92      31.724  18.359  24.664  1.00 25.00           C
ATOM     93  CA  VAL    93      29.541  17.531  27.665  1.00 25.00           C
ATOM     94  CA  SER    94      31.348  17.043  30.978  1.00 25.00           C
ATOM     95  CA  SER    95      29.972  20.317  32.170  1.00 25.00           C
ATOM     96  CA  ALA    96      33.381  21.595  33.203  1.00 25.00           C
ATOM     97  CA  ALA    97      33.814  25.055  31.619  1.00 25.00           C
ATOM     98  CA  ASP    98      35.757  23.505  28.705  1.00 25.00           C
ATOM     99  CA  ALA    99      32.990  20.903  28.213  1.00 25.00           C
ATOM    100  CA  ALA   100      30.348  23.677  28.209  1.00 25.00           C
ATOM    101  CA  ARG   101      32.372  25.634  25.614  1.00 25.00           C
ATOM    102  CA  LEU   102      32.651  22.500  23.430  1.00 25.00           C
ATOM    103  CA  ALA   103      28.871  21.950  23.696  1.00 25.00           C
ATOM    104  CA  VAL   104      28.245  25.594  22.698  1.00 25.00           C
ATOM    105  CA  ARG   105      30.583  25.198  19.690  1.00 25.00           C
ATOM    106  CA  MET   106      28.736  22.011  18.644  1.00 25.00           C
ATOM    107  CA  GLU   107      25.380  23.832  18.926  1.00 25.00           C
ATOM    108  CA  ASN   108      26.733  26.707  16.786  1.00 25.00           C
ATOM    109  CA  ASP   109      27.960  24.205  14.158  1.00 25.00           C
ATOM    110  CA  GLY   110      24.521  22.520  14.122  1.00 25.00           C
ATOM    111  CA  ALA   111      22.828  25.925  13.673  1.00 25.00           C
ATOM    112  CA  THR   112      25.195  26.748  10.777  1.00 25.00           C
ATOM    113  CA  ALA   113      24.406  23.375   9.143  1.00 25.00           C
ATOM    114  CA  TRP   114      20.654  24.043   9.518  1.00 25.00           C
ATOM    115  CA  ARG   115      21.086  27.503   7.933  1.00 25.00           C
ATOM    116  CA  ALA   116      23.029  25.952   5.020  1.00 25.00           C
ATOM    117  CA  VAL   117      20.262  23.350   4.527  1.00 25.00           C
ATOM    118  CA  VAL   118      17.621  26.124   4.523  1.00 25.00           C
ATOM    119  CA  GLU   119      19.645  28.082   1.929  1.00 25.00           C
ATOM    120  CA  HIS   120      19.924  24.948  -0.256  1.00 25.00           C
ATOM    121  CA  ALA   121      16.143  24.397   0.010  1.00 25.00           C
ATOM    122  CA  GLU   122      15.485  22.345   3.177  1.00 25.00           C
ATOM    123  CA  THR   123      16.052  21.195   6.776  1.00 25.00           C
ATOM    124  CA  ALA   124      16.657  20.923  10.581  1.00 25.00           C
ATOM    125  CA  ASP   125      17.308  19.815  14.170  1.00 25.00           C
ATOM    126  CA  ASP   126      16.514  17.787  17.320  1.00 25.00           C
ATOM    127  CA  ARG   127      20.239  17.043  17.809  1.00 25.00           C
ATOM    128  CA  VAL   128      21.059  20.764  17.421  1.00 25.00           C
ATOM    129  CA  PHE   129      18.369  21.650  19.999  1.00 25.00           C
ATOM    130  CA  ALA   130      19.804  19.056  22.424  1.00 25.00           C
ATOM    131  CA  SER   131      23.315  20.505  21.936  1.00 25.00           C
ATOM    132  CA  THR   132      21.981  24.030  22.613  1.00 25.00           C
ATOM    133  CA  ALA   133      20.253  22.791  25.798  1.00 25.00           C
ATOM    134  CA  LEU   134      23.507  21.130  26.946  1.00 25.00           C
ATOM    135  CA  THR   135      25.425  24.380  26.294  1.00 25.00           C
ATOM    136  CA  GLU   136      22.825  26.346  28.305  1.00 25.00           C
ATOM    137  CA  SER   137      23.130  23.848  31.191  1.00 25.00           C
ATOM    138  CA  ALA   138      26.944  24.183  31.110  1.00 25.00           C
ATOM    139  CA  VAL   139      26.635  28.000  31.184  1.00 25.00           C
ATOM    140  CA  MET   140      24.248  27.773  34.171  1.00 25.00           C
ATOM    141  CA  ALA   141      26.707  25.469  35.992  1.00 25.00           C
ATOM    142  CA  THR   142      29.559  27.930  35.305  1.00 25.00           C
ATOM    143  CA  ARG   143      27.431  30.813  36.655  1.00 25.00           C
ATOM    144  CA  TRP   144      26.638  28.785  39.805  1.00 25.00           C
ATOM    145  CA  ASN   145      30.362  28.041  40.293  1.00 25.00           C
ATOM    146  CA  ARG   146      31.102  31.335  42.050  1.00 25.00           C
ATOM    147  CA  VAL   147      28.405  31.296  44.701  1.00 25.00           C
ATOM    148  CA  LEU   148      27.370  27.765  45.720  1.00 25.00           C
ATOM    149  CA  GLY   149      27.161  27.447  49.491  1.00 25.00           C
ATOM    150  CA  ALA   150      28.901  24.309  50.806  1.00 25.00           C
ATOM    151  CA  TRP   151      26.515  24.466  53.825  1.00 25.00           C
TER
END
