
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  112 (  112),  selected  112 , name T0283TS168_1
# Molecule2: number of CA atoms  112 (  888),  selected  112 , name T0283
# PARAMETERS: T0283TS168_1.T0283  -4  -ie  -d:5  -o1  -sia  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1           -
LGA    S       2      S       2           #
LGA    F       3      F       3          1.011
LGA    I       4      I       4          0.543
LGA    E       5      E       5          0.470
LGA    K       6      K       6          0.798
LGA    M       7      M       7          0.812
LGA    I       8      I       8          0.623
LGA    G       9      G       9          0.603
LGA    S      10      S      10          0.982
LGA    L      11      L      11          1.035
LGA    N      12      N      12          0.733
LGA    D      13      D      13          0.776
LGA    K      14      K      14          0.749
LGA    R      15      R      15          0.740
LGA    E      16      E      16          0.857
LGA    W      17      W      17          0.825
LGA    K      18      K      18          0.785
LGA    A      19      A      19          0.710
LGA    M      20      M      20          0.723
LGA    E      21      E      21          0.697
LGA    A      22      A      22          0.867
LGA    R      23      R      23          0.838
LGA    A      24      A      24          0.657
LGA    K      25      K      25          0.630
LGA    A      26      A      26          0.689
LGA    L      27      -       -           -
LGA    P      28      -       -           -
LGA    K      29      -       -           -
LGA    E      30      -       -           -
LGA    Y      31      -       -           -
LGA    H      32      -       -           -
LGA    H      33      -       -           -
LGA    A      34      -       -           -
LGA    Y      35      -       -           -
LGA    K      36      -       -           -
LGA    A      37      -       -           -
LGA    I      38      -       -           -
LGA    Q      39      -       -           -
LGA    K      40      -       -           -
LGA    Y      41      -       -           -
LGA    M      42      -       -           -
LGA    W      43      -       -           -
LGA    T      44      -       -           -
LGA    S      45      -       -           -
LGA    G      46      -       -           -
LGA    G      47      -       -           -
LGA    P      48      -       -           -
LGA    T      49      -       -           -
LGA    D      50      -       -           -
LGA    W      51      -       -           -
LGA    Q      52      -       -           -
LGA    D      53      -       -           -
LGA    T      54      -       -           -
LGA    K      55      -       -           -
LGA    R      56      -       -           -
LGA    I      57      -       -           -
LGA    F      58      -       -           -
LGA    G      59      -       -           -
LGA    G      60      -       -           -
LGA    I      61      -       -           -
LGA    L      62      L      27          2.553
LGA    D      63      P      28          3.764
LGA    L      64      -       -           -
LGA    F      65      -       -           -
LGA    E      66      K      29          2.521
LGA    E      67      E      30          1.548
LGA    G      68      Y      31          3.008
LGA    A      69      H      32          3.938
LGA    A      70      H      33           #
LGA    E      71      A      34           -
LGA    G      72      Y      35           -
LGA    K      73      K      36           -
LGA    K      74      A      37           -
LGA    V      75      I      38           -
LGA    T      76      Q      39           -
LGA    D      77      K      40           -
LGA    L      78      Y      41           -
LGA    T      79      M      42           -
LGA    G      80      W      43           -
LGA    E      81      T      44           -
LGA    D      82      S      45           -
LGA    V      83      G      46           -
LGA    A      84      -       -           -
LGA    A      85      -       -           -
LGA    F      86      -       -           -
LGA    C      87      -       -           -
LGA    D      88      -       -           -
LGA    E      89      -       -           -
LGA    L      90      -       -           -
LGA    M      91      -       -           -
LGA    K      92      -       -           -
LGA    D      93      -       -           -
LGA    T      94      -       -           -
LGA    K      95      -       -           -
LGA    T      96      -       -           -
LGA    W      97      -       -           -
LGA    M      98      G      47          3.510
LGA    D      99      P      48          3.319
LGA    K     100      T      49          3.913
LGA    Y     101      D      50          4.227
LGA    -       -      W      51           -
LGA    -       -      Q      52           -
LGA    -       -      D      53           -
LGA    -       -      T      54           -
LGA    -       -      K      55           -
LGA    -       -      R      56           -
LGA    -       -      I      57           -
LGA    -       -      F      58           -
LGA    -       -      G      59           -
LGA    -       -      G      60           -
LGA    -       -      I      61           -
LGA    -       -      L      62           -
LGA    -       -      D      63           -
LGA    -       -      L      64           -
LGA    -       -      F      65           -
LGA    -       -      E      66           -
LGA    -       -      E      67           -
LGA    -       -      G      68           -
LGA    -       -      A      69           -
LGA    -       -      A      70           -
LGA    -       -      E      71           -
LGA    -       -      G      72           -
LGA    -       -      K      73           -
LGA    -       -      K      74           -
LGA    -       -      V      75           -
LGA    -       -      T      76           -
LGA    -       -      D      77           -
LGA    -       -      L      78           -
LGA    -       -      T      79           -
LGA    -       -      G      80           -
LGA    -       -      E      81           -
LGA    -       -      D      82           -
LGA    -       -      V      83           -
LGA    -       -      A      84           -
LGA    -       -      A      85           -
LGA    -       -      F      86           -
LGA    -       -      C      87           -
LGA    -       -      D      88           -
LGA    -       -      E      89           -
LGA    -       -      L      90           -
LGA    -       -      M      91           -
LGA    -       -      K      92           -
LGA    -       -      D      93           -
LGA    -       -      T      94           -
LGA    -       -      K      95           -
LGA    -       -      T      96           -
LGA    R     102      W      97          2.802
LGA    T     103      M      98          4.493
LGA    -       -      D      99           -
LGA    K     104      K     100          5.359
LGA    L     105      -       -           -
LGA    N     106      -       -           -
LGA    D     107      Y     101          5.204
LGA    S     108      R     102           -
LGA    I     109      T     103           -
LGA    G     110      K     104           -
LGA    R     111      L     105           -
LGA    D     112      N     106           -
LGA    -       -      D     107           -
LGA    -       -      S     108           -
LGA    -       -      I     109           -
LGA    -       -      G     110           -
LGA    -       -      R     111           -
LGA    -       -      D     112           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  112  112    5.0     38    2.34    71.05     29.026     1.556

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.736353 * X  +   0.621848 * Y  +  -0.266627 * Z  +  16.678129
  Y_new =  -0.219893 * X  +   0.152729 * Y  +   0.963494 * Z  +  21.473310
  Z_new =   0.639868 * X  +   0.768101 * Y  +   0.024278 * Z  +  -1.549330 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.539199   -1.602393  [ DEG:    88.1896    -91.8104 ]
  Theta =  -0.694327   -2.447266  [ DEG:   -39.7820   -140.2180 ]
  Phi   =  -2.851398    0.290195  [ DEG:  -163.3731     16.6269 ]
 
# END of job
REMARK  ----------------------------------------------------------
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0283TS168_1                                  
REMARK     2: T0283                                         
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0283TS168_1.T0283 -4 -ie -d:5 -o1 -sia 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  112  112   5.0   38   2.34   71.05  29.026
REMARK  ---------------------------------------------------------- 
MOLECULE T0283TS168_1
PFRMAT TS
TARGET T0283
MODEL 1
PARENT N/A
ATOM      1  CA  MET     1      35.073  11.713  19.285  1.00 25.00           C
ATOM      2  CA  SER     2      31.366  12.616  18.978  1.00 25.00           C
ATOM      3  CA  PHE     3      29.372   9.740  20.577  1.00 25.00           C
ATOM      4  CA  ILE     4      28.587   7.007  18.011  1.00 25.00           C
ATOM      5  CA  GLU     5      25.093   8.483  17.473  1.00 25.00           C
ATOM      6  CA  LYS     6      26.613  11.962  16.973  1.00 25.00           C
ATOM      7  CA  MET     7      29.099  10.539  14.432  1.00 25.00           C
ATOM      8  CA  ILE     8      26.237   8.813  12.561  1.00 25.00           C
ATOM      9  CA  GLY     9      24.266  12.096  12.499  1.00 25.00           C
ATOM     10  CA  SER    10      27.333  13.941  11.139  1.00 25.00           C
ATOM     11  CA  LEU    11      27.760  11.277   8.420  1.00 25.00           C
ATOM     12  CA  ASN    12      24.065  11.617   7.473  1.00 25.00           C
ATOM     13  CA  ASP    13      24.443  15.423   7.267  1.00 25.00           C
ATOM     14  CA  LYS    14      27.528  15.021   5.034  1.00 25.00           C
ATOM     15  CA  ARG    15      25.600  12.614   2.762  1.00 25.00           C
ATOM     16  CA  GLU    16      22.706  15.111   2.532  1.00 25.00           C
ATOM     17  CA  TRP    17      25.159  17.910   1.630  1.00 25.00           C
ATOM     18  CA  LYS    18      26.723  15.700  -1.079  1.00 25.00           C
ATOM     19  CA  ALA    19      23.247  14.929  -2.489  1.00 25.00           C
ATOM     20  CA  MET    20      22.412  18.667  -2.544  1.00 25.00           C
ATOM     21  CA  GLU    21      25.699  19.399  -4.366  1.00 25.00           C
ATOM     22  CA  ALA    22      24.913  16.667  -6.933  1.00 25.00           C
ATOM     23  CA  ARG    23      21.420  18.143  -7.470  1.00 25.00           C
ATOM     24  CA  ALA    24      22.939  21.622  -7.971  1.00 25.00           C
ATOM     25  CA  LYS    25      25.426  20.198 -10.512  1.00 25.00           C
ATOM     26  CA  ALA    26      22.564  18.473 -12.382  1.00 25.00           C
ATOM     27  CA  LEU    27      20.586  15.347 -11.624  1.00 25.00           C
ATOM     28  CA  PRO    28      18.611  12.321 -12.980  1.00 25.00           C
ATOM     29  CA  LYS    29      18.751  10.016  -9.918  1.00 25.00           C
ATOM     30  CA  GLU    30      18.951  12.794  -7.289  1.00 25.00           C
ATOM     31  CA  TYR    31      16.267  14.788  -9.157  1.00 25.00           C
ATOM     32  CA  HIS    32      14.023  11.688  -9.291  1.00 25.00           C
ATOM     33  CA  HIS    33      14.511  11.141  -5.532  1.00 25.00           C
ATOM     34  CA  ALA    34      13.609  14.802  -4.857  1.00 25.00           C
ATOM     35  CA  TYR    35      10.459  14.447  -7.006  1.00 25.00           C
ATOM     36  CA  LYS    36       9.478  11.280  -5.089  1.00 25.00           C
ATOM     37  CA  ALA    37       9.994  13.105  -1.762  1.00 25.00           C
ATOM     38  CA  ILE    38       7.819  16.009  -2.989  1.00 25.00           C
ATOM     39  CA  GLN    39       5.083  13.546  -4.045  1.00 25.00           C
ATOM     40  CA  LYS    40       5.232  11.867  -0.607  1.00 25.00           C
ATOM     41  CA  TYR    41       4.940  15.283   1.101  1.00 25.00           C
ATOM     42  CA  MET    42       1.917  16.146  -1.086  1.00 25.00           C
ATOM     43  CA  TRP    43       0.283  12.800  -0.189  1.00 25.00           C
ATOM     44  CA  THR    44       0.897  13.470   3.531  1.00 25.00           C
ATOM     45  CA  SER    45      -0.905  16.722   3.059  1.00 25.00           C
ATOM     46  CA  GLY    46      -3.066  16.794  -0.123  1.00 25.00           C
ATOM     47  CA  GLY    47      -3.047  17.715  -3.812  1.00 25.00           C
ATOM     48  CA  PRO    48      -2.437  16.296  -7.289  1.00 25.00           C
ATOM     49  CA  THR    49       0.117  18.205  -9.256  1.00 25.00           C
ATOM     50  CA  ASP    50       1.292  14.758 -10.289  1.00 25.00           C
ATOM     51  CA  TRP    51       4.313  12.697 -11.429  1.00 25.00           C
ATOM     52  CA  GLN    52       4.530  14.815 -14.612  1.00 25.00           C
ATOM     53  CA  ASP    53       4.362  18.019 -12.521  1.00 25.00           C
ATOM     54  CA  THR    54       7.149  16.709 -10.244  1.00 25.00           C
ATOM     55  CA  LYS    55       9.295  15.881 -13.307  1.00 25.00           C
ATOM     56  CA  ARG    56       8.708  19.400 -14.700  1.00 25.00           C
ATOM     57  CA  ILE    57       9.711  20.926 -11.335  1.00 25.00           C
ATOM     58  CA  PHE    58      12.895  18.798 -11.290  1.00 25.00           C
ATOM     59  CA  GLY    59      13.731  19.931 -14.852  1.00 25.00           C
ATOM     60  CA  GLY    60      13.202  23.587 -13.839  1.00 25.00           C
ATOM     61  CA  ILE    61      15.495  23.104 -10.809  1.00 25.00           C
ATOM     62  CA  LEU    62      18.173  21.538 -13.055  1.00 25.00           C
ATOM     63  CA  ASP    63      17.895  24.485 -15.485  1.00 25.00           C
ATOM     64  CA  LEU    64      18.259  26.949 -12.576  1.00 25.00           C
ATOM     65  CA  PHE    65      21.356  25.067 -11.336  1.00 25.00           C
ATOM     66  CA  GLU    66      22.861  25.177 -14.856  1.00 25.00           C
ATOM     67  CA  GLU    67      22.187  28.942 -15.054  1.00 25.00           C
ATOM     68  CA  GLY    68      23.861  29.446 -11.646  1.00 25.00           C
ATOM     69  CA  ALA    69      26.899  27.426 -12.812  1.00 25.00           C
ATOM     70  CA  ALA    70      27.115  29.546 -15.995  1.00 25.00           C
ATOM     71  CA  GLU    71      25.068  32.440 -17.421  1.00 25.00           C
ATOM     72  CA  GLY    72      21.359  33.463 -17.093  1.00 25.00           C
ATOM     73  CA  LYS    73      18.097  31.579 -16.514  1.00 25.00           C
ATOM     74  CA  LYS    74      14.316  31.361 -16.129  1.00 25.00           C
ATOM     75  CA  VAL    75      12.390  29.225 -13.672  1.00 25.00           C
ATOM     76  CA  THR    76      13.366  31.997 -11.215  1.00 25.00           C
ATOM     77  CA  ASP    77      10.391  34.109 -12.379  1.00 25.00           C
ATOM     78  CA  LEU    78       8.049  31.116 -11.906  1.00 25.00           C
ATOM     79  CA  THR    79       5.084  28.806 -12.583  1.00 25.00           C
ATOM     80  CA  GLY    80       1.807  27.096 -11.749  1.00 25.00           C
ATOM     81  CA  GLU    81       1.332  30.146  -9.481  1.00 25.00           C
ATOM     82  CA  ASP    82       0.740  27.849  -6.474  1.00 25.00           C
ATOM     83  CA  VAL    83       3.917  25.884  -7.319  1.00 25.00           C
ATOM     84  CA  ALA    84       5.901  29.150  -7.565  1.00 25.00           C
ATOM     85  CA  ALA    85       4.531  30.268  -4.168  1.00 25.00           C
ATOM     86  CA  PHE    86       5.518  26.901  -2.635  1.00 25.00           C
ATOM     87  CA  CYS    87       9.042  27.240  -4.097  1.00 25.00           C
ATOM     88  CA  ASP    88       9.326  30.777  -2.656  1.00 25.00           C
ATOM     89  CA  GLU    89       8.200  29.496   0.773  1.00 25.00           C
ATOM     90  CA  LEU    90      10.802  26.692   0.608  1.00 25.00           C
ATOM     91  CA  MET    91      13.520  29.232  -0.297  1.00 25.00           C
ATOM     92  CA  LYS    92      12.470  31.442   2.649  1.00 25.00           C
ATOM     93  CA  ASP    93      12.612  28.421   4.998  1.00 25.00           C
ATOM     94  CA  THR    94      16.108  27.548   3.703  1.00 25.00           C
ATOM     95  CA  LYS    95      17.248  31.159   4.271  1.00 25.00           C
ATOM     96  CA  THR    96      15.851  31.065   7.835  1.00 25.00           C
ATOM     97  CA  TRP    97      17.692  27.773   8.497  1.00 25.00           C
ATOM     98  CA  MET    98      20.945  29.297   7.169  1.00 25.00           C
ATOM     99  CA  ASP    99      20.470  32.348   9.436  1.00 25.00           C
ATOM    100  CA  LYS   100      19.878  30.051  12.444  1.00 25.00           C
ATOM    101  CA  TYR   101      23.054  28.086  11.599  1.00 25.00           C
ATOM    102  CA  ARG   102      25.039  31.352  11.353  1.00 25.00           C
ATOM    103  CA  THR   103      23.668  32.470  14.750  1.00 25.00           C
ATOM    104  CA  LYS   104      24.656  29.102  16.283  1.00 25.00           C
ATOM    105  CA  LEU   105      28.179  29.441  14.821  1.00 25.00           C
ATOM    106  CA  ASN   106      28.465  32.977  16.262  1.00 25.00           C
ATOM    107  CA  ASP   107      27.338  31.697  19.691  1.00 25.00           C
ATOM    108  CA  SER   108      29.940  28.892  19.526  1.00 25.00           C
ATOM    109  CA  ILE   109      32.658  31.434  18.621  1.00 25.00           C
ATOM    110  CA  GLY   110      34.727  29.007  16.517  1.00 25.00           C
ATOM    111  CA  ARG   111      38.365  28.660  15.300  1.00 25.00           C
ATOM    112  CA  ASP   112      38.082  25.142  13.857  1.00 25.00           C
TER
END
