
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  112 (  112),  selected  112 , name T0283TS393_5
# Molecule2: number of CA atoms  112 (  888),  selected  112 , name T0283
# PARAMETERS: T0283TS393_5.T0283  -4  -ie  -d:5  -o1  -sia  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          3.261
LGA    S       2      S       2          2.939
LGA    F       3      F       3          1.483
LGA    I       4      I       4          1.509
LGA    E       5      E       5          0.938
LGA    K       6      K       6          1.120
LGA    M       7      M       7          1.224
LGA    I       8      I       8          0.902
LGA    G       9      G       9          0.446
LGA    S      10      S      10          0.789
LGA    L      11      L      11          0.524
LGA    N      12      N      12          0.409
LGA    D      13      D      13          0.697
LGA    K      14      K      14          0.819
LGA    R      15      R      15          0.407
LGA    E      16      E      16          0.855
LGA    W      17      W      17          0.847
LGA    K      18      K      18          0.426
LGA    A      19      A      19          0.730
LGA    M      20      M      20          0.920
LGA    E      21      E      21          0.637
LGA    A      22      A      22          0.524
LGA    R      23      R      23          0.673
LGA    A      24      A      24          0.834
LGA    K      25      K      25          0.419
LGA    A      26      A      26          0.795
LGA    L      27      L      27          1.115
LGA    P      28      P      28          1.426
LGA    K      29      K      29          3.495
LGA    E      30      -       -           -
LGA    Y      31      -       -           -
LGA    H      32      E      30          2.865
LGA    H      33      Y      31          2.192
LGA    A      34      H      32          3.817
LGA    Y      35      H      33          4.420
LGA    K      36      A      34          5.275
LGA    A      37      -       -           -
LGA    I      38      -       -           -
LGA    Q      39      -       -           -
LGA    K      40      -       -           -
LGA    Y      41      -       -           -
LGA    M      42      -       -           -
LGA    W      43      -       -           -
LGA    T      44      -       -           -
LGA    S      45      -       -           -
LGA    G      46      -       -           -
LGA    G      47      -       -           -
LGA    P      48      -       -           -
LGA    T      49      -       -           -
LGA    D      50      -       -           -
LGA    W      51      -       -           -
LGA    Q      52      -       -           -
LGA    D      53      -       -           -
LGA    T      54      -       -           -
LGA    K      55      -       -           -
LGA    R      56      -       -           -
LGA    I      57      -       -           -
LGA    F      58      -       -           -
LGA    G      59      -       -           -
LGA    G      60      -       -           -
LGA    I      61      Y      35          4.564
LGA    L      62      K      36           -
LGA    D      63      A      37           -
LGA    L      64      I      38          4.552
LGA    -       -      Q      39           -
LGA    F      65      K      40          4.011
LGA    E      66      Y      41          2.367
LGA    E      67      M      42          1.989
LGA    G      68      W      43          1.347
LGA    A      69      T      44          2.664
LGA    A      70      S      45          2.480
LGA    -       -      G      46           -
LGA    E      71      G      47          4.146
LGA    G      72      P      48          2.051
LGA    K      73      T      49          6.140
LGA    -       -      D      50           -
LGA    -       -      W      51           -
LGA    -       -      Q      52           -
LGA    -       -      D      53           -
LGA    K      74      T      54          5.089
LGA    -       -      K      55           -
LGA    -       -      R      56           -
LGA    V      75      I      57          2.126
LGA    T      76      F      58          2.078
LGA    D      77      G      59           #
LGA    L      78      G      60           -
LGA    T      79      I      61           -
LGA    G      80      L      62           -
LGA    E      81      D      63           -
LGA    D      82      L      64           -
LGA    V      83      F      65           -
LGA    A      84      E      66           -
LGA    A      85      E      67           -
LGA    F      86      G      68           -
LGA    C      87      A      69           -
LGA    D      88      A      70           -
LGA    E      89      E      71           -
LGA    L      90      G      72           -
LGA    M      91      K      73           -
LGA    K      92      K      74           -
LGA    D      93      V      75           -
LGA    -       -      T      76           -
LGA    -       -      D      77           -
LGA    -       -      L      78           -
LGA    -       -      T      79           -
LGA    -       -      G      80           -
LGA    -       -      E      81           -
LGA    -       -      D      82           -
LGA    T      94      V      83           #
LGA    K      95      A      84           #
LGA    T      96      -       -           -
LGA    W      97      -       -           -
LGA    M      98      A      85           #
LGA    D      99      F      86           -
LGA    K     100      C      87           -
LGA    Y     101      D      88           -
LGA    R     102      E      89           -
LGA    T     103      L      90           -
LGA    K     104      M      91           -
LGA    L     105      K      92           -
LGA    N     106      D      93           -
LGA    D     107      T      94           -
LGA    S     108      K      95           -
LGA    I     109      T      96           -
LGA    G     110      W      97           -
LGA    R     111      M      98           -
LGA    D     112      D      99           -
LGA    -       -      K     100           -
LGA    -       -      Y     101           -
LGA    -       -      R     102           -
LGA    -       -      T     103           -
LGA    -       -      K     104           -
LGA    -       -      L     105           -
LGA    -       -      N     106           -
LGA    -       -      D     107           -
LGA    -       -      S     108           -
LGA    -       -      I     109           -
LGA    -       -      G     110           -
LGA    -       -      R     111           -
LGA    -       -      D     112           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  112  112    5.0     48    2.51    60.42     32.570     1.837

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.239882 * X  +   0.892180 * Y  +   0.382715 * Z  +  22.496357
  Y_new =  -0.968643 * X  +  -0.193687 * Y  +  -0.155616 * Z  +  31.002144
  Z_new =  -0.064710 * X  +  -0.408044 * Y  +   0.910666 * Z  +  -2.197271 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.421249    2.720343  [ DEG:   -24.1358    155.8642 ]
  Theta =   0.064755    3.076837  [ DEG:     3.7102    176.2898 ]
  Phi   =  -1.813560    1.328033  [ DEG:  -103.9093     76.0907 ]
 
# END of job
REMARK  ----------------------------------------------------------
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0283TS393_5                                  
REMARK     2: T0283                                         
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0283TS393_5.T0283 -4 -ie -d:5 -o1 -sia 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  112  112   5.0   48   2.51   60.42  32.570
REMARK  ---------------------------------------------------------- 
MOLECULE T0283TS393_5
PFRMAT TS
TARGET T0283
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1      28.436   3.354  24.037  1.00 25.00           C
ATOM      2  CA  SER     2      27.110   6.598  22.459  1.00 25.00           C
ATOM      3  CA  PHE     3      29.911   7.711  20.070  1.00 25.00           C
ATOM      4  CA  ILE     4      28.347   5.279  17.560  1.00 25.00           C
ATOM      5  CA  GLU     5      25.168   7.413  17.435  1.00 25.00           C
ATOM      6  CA  LYS     6      27.273  10.555  16.830  1.00 25.00           C
ATOM      7  CA  MET     7      29.157   8.781  14.007  1.00 25.00           C
ATOM      8  CA  ILE     8      25.834   7.706  12.434  1.00 25.00           C
ATOM      9  CA  GLY     9      24.541  11.304  12.646  1.00 25.00           C
ATOM     10  CA  SER    10      27.749  12.580  10.986  1.00 25.00           C
ATOM     11  CA  LEU    11      27.365   9.990   8.193  1.00 25.00           C
ATOM     12  CA  ASN    12      23.727  11.065   7.663  1.00 25.00           C
ATOM     13  CA  ASP    13      24.812  14.733   7.483  1.00 25.00           C
ATOM     14  CA  LYS    14      27.509  13.835   4.917  1.00 25.00           C
ATOM     15  CA  ARG    15      24.925  11.929   2.831  1.00 25.00           C
ATOM     16  CA  GLU    16      22.561  14.940   2.963  1.00 25.00           C
ATOM     17  CA  TRP    17      25.403  17.251   1.846  1.00 25.00           C
ATOM     18  CA  LYS    18      26.216  14.889  -1.057  1.00 25.00           C
ATOM     19  CA  ALA    19      22.528  14.849  -2.089  1.00 25.00           C
ATOM     20  CA  MET    20      22.433  18.676  -1.987  1.00 25.00           C
ATOM     21  CA  GLU    21      25.591  18.838  -4.149  1.00 25.00           C
ATOM     22  CA  ALA    22      24.026  16.405  -6.659  1.00 25.00           C
ATOM     23  CA  ARG    23      20.848  18.539  -6.784  1.00 25.00           C
ATOM     24  CA  ALA    24      22.953  21.681  -7.388  1.00 25.00           C
ATOM     25  CA  LYS    25      24.836  19.906 -10.211  1.00 25.00           C
ATOM     26  CA  ALA    26      21.514  18.833 -11.785  1.00 25.00           C
ATOM     27  CA  LEU    27      20.924  22.615 -11.900  1.00 25.00           C
ATOM     28  CA  PRO    28      22.286  23.361 -15.420  1.00 25.00           C
ATOM     29  CA  LYS    29      25.987  23.252 -16.159  1.00 25.00           C
ATOM     30  CA  GLU    30      26.770  24.048 -12.496  1.00 25.00           C
ATOM     31  CA  TYR    31      28.433  27.336 -13.540  1.00 25.00           C
ATOM     32  CA  HIS    32      25.370  28.243 -15.653  1.00 25.00           C
ATOM     33  CA  HIS    33      23.070  27.484 -12.686  1.00 25.00           C
ATOM     34  CA  ALA    34      25.230  29.685 -10.415  1.00 25.00           C
ATOM     35  CA  TYR    35      25.079  32.523 -12.982  1.00 25.00           C
ATOM     36  CA  LYS    36      21.269  32.181 -13.173  1.00 25.00           C
ATOM     37  CA  ALA    37      21.041  32.305  -9.352  1.00 25.00           C
ATOM     38  CA  ILE    38      23.228  35.449  -9.300  1.00 25.00           C
ATOM     39  CA  GLN    39      20.994  37.077 -11.950  1.00 25.00           C
ATOM     40  CA  LYS    40      17.881  36.212  -9.894  1.00 25.00           C
ATOM     41  CA  TYR    41      19.495  37.728  -6.769  1.00 25.00           C
ATOM     42  CA  MET    42      20.346  40.911  -8.722  1.00 25.00           C
ATOM     43  CA  TRP    43      16.736  41.133  -9.980  1.00 25.00           C
ATOM     44  CA  THR    44      15.436  40.717  -6.402  1.00 25.00           C
ATOM     45  CA  SER    45      12.954  38.597  -4.344  1.00 25.00           C
ATOM     46  CA  GLY    46      11.263  38.158  -7.758  1.00 25.00           C
ATOM     47  CA  GLY    47      11.167  40.444 -10.726  1.00 25.00           C
ATOM     48  CA  PRO    48      13.468  39.091 -13.498  1.00 25.00           C
ATOM     49  CA  THR    49      13.269  37.241 -16.814  1.00 25.00           C
ATOM     50  CA  ASP    50      12.822  33.888 -15.071  1.00 25.00           C
ATOM     51  CA  TRP    51       9.498  32.203 -14.690  1.00 25.00           C
ATOM     52  CA  GLN    52       8.171  33.292 -11.266  1.00 25.00           C
ATOM     53  CA  ASP    53       9.130  29.893  -9.785  1.00 25.00           C
ATOM     54  CA  THR    54      12.644  30.208 -11.275  1.00 25.00           C
ATOM     55  CA  LYS    55      12.986  33.721  -9.789  1.00 25.00           C
ATOM     56  CA  ARG    56      11.873  32.410  -6.368  1.00 25.00           C
ATOM     57  CA  ILE    57      14.438  29.575  -6.593  1.00 25.00           C
ATOM     58  CA  PHE    58      17.180  32.095  -7.488  1.00 25.00           C
ATOM     59  CA  GLY    59      16.182  34.278  -4.503  1.00 25.00           C
ATOM     60  CA  GLY    60      16.307  31.224  -2.196  1.00 25.00           C
ATOM     61  CA  ILE    61      19.782  30.324  -3.533  1.00 25.00           C
ATOM     62  CA  LEU    62      20.970  33.915  -2.927  1.00 25.00           C
ATOM     63  CA  ASP    63      19.603  33.790   0.648  1.00 25.00           C
ATOM     64  CA  LEU    64      21.410  30.467   1.249  1.00 25.00           C
ATOM     65  CA  PHE    65      24.669  31.970  -0.087  1.00 25.00           C
ATOM     66  CA  GLU    66      24.251  34.994   2.224  1.00 25.00           C
ATOM     67  CA  GLU    67      23.656  32.665   5.206  1.00 25.00           C
ATOM     68  CA  GLY    68      26.802  30.673   4.308  1.00 25.00           C
ATOM     69  CA  ALA    69      28.825  33.918   4.087  1.00 25.00           C
ATOM     70  CA  ALA    70      27.497  35.007   7.510  1.00 25.00           C
ATOM     71  CA  GLU    71      26.593  31.860   9.412  1.00 25.00           C
ATOM     72  CA  GLY    72      23.264  29.968   9.531  1.00 25.00           C
ATOM     73  CA  LYS    73      19.877  31.461   8.582  1.00 25.00           C
ATOM     74  CA  LYS    74      19.040  29.235   5.541  1.00 25.00           C
ATOM     75  CA  VAL    75      18.543  26.488   2.945  1.00 25.00           C
ATOM     76  CA  THR    76      20.304  25.655  -0.353  1.00 25.00           C
ATOM     77  CA  ASP    77      23.698  25.687   1.423  1.00 25.00           C
ATOM     78  CA  LEU    78      26.019  25.128  -1.541  1.00 25.00           C
ATOM     79  CA  THR    79      28.762  22.588  -2.120  1.00 25.00           C
ATOM     80  CA  GLY    80      31.739  21.172  -4.047  1.00 25.00           C
ATOM     81  CA  GLU    81      34.414  23.725  -3.049  1.00 25.00           C
ATOM     82  CA  ASP    82      34.046  25.472  -6.438  1.00 25.00           C
ATOM     83  CA  VAL    83      30.244  25.591  -5.990  1.00 25.00           C
ATOM     84  CA  ALA    84      30.679  27.082  -2.490  1.00 25.00           C
ATOM     85  CA  ALA    85      33.075  29.724  -3.886  1.00 25.00           C
ATOM     86  CA  PHE    86      30.554  30.595  -6.634  1.00 25.00           C
ATOM     87  CA  CYS    87      27.779  30.929  -4.016  1.00 25.00           C
ATOM     88  CA  ASP    88      30.009  33.221  -1.908  1.00 25.00           C
ATOM     89  CA  GLU    89      30.756  35.368  -4.990  1.00 25.00           C
ATOM     90  CA  LEU    90      27.011  35.610  -5.759  1.00 25.00           C
ATOM     91  CA  MET    91      26.312  36.658  -2.142  1.00 25.00           C
ATOM     92  CA  LYS    92      29.044  39.331  -2.362  1.00 25.00           C
ATOM     93  CA  ASP    93      27.540  40.635  -5.635  1.00 25.00           C
ATOM     94  CA  THR    94      24.076  40.787  -4.011  1.00 25.00           C
ATOM     95  CA  LYS    95      25.528  42.710  -1.035  1.00 25.00           C
ATOM     96  CA  THR    96      27.234  45.169  -3.425  1.00 25.00           C
ATOM     97  CA  TRP    97      23.935  45.671  -5.302  1.00 25.00           C
ATOM     98  CA  MET    98      22.120  46.316  -1.993  1.00 25.00           C
ATOM     99  CA  ASP    99      24.795  48.869  -0.996  1.00 25.00           C
ATOM    100  CA  LYS   100      24.427  50.616  -4.384  1.00 25.00           C
ATOM    101  CA  TYR   101      20.625  50.735  -3.937  1.00 25.00           C
ATOM    102  CA  ARG   102      21.060  52.226  -0.436  1.00 25.00           C
ATOM    103  CA  THR   103      23.455  54.868  -1.832  1.00 25.00           C
ATOM    104  CA  LYS   104      20.935  55.739  -4.580  1.00 25.00           C
ATOM    105  CA  LEU   105      18.160  56.074  -1.962  1.00 25.00           C
ATOM    106  CA  ASN   106      20.390  58.366   0.145  1.00 25.00           C
ATOM    107  CA  ASP   107      21.136  60.514  -2.937  1.00 25.00           C
ATOM    108  CA  SER   108      17.392  60.755  -3.706  1.00 25.00           C
ATOM    109  CA  ILE   109      16.693  61.803  -0.089  1.00 25.00           C
ATOM    110  CA  GLY   110      13.673  60.964   2.042  1.00 25.00           C
ATOM    111  CA  ARG   111      11.745  57.672   2.248  1.00 25.00           C
ATOM    112  CA  ASP   112      11.276  54.235   3.656  1.00 25.00           C
TER
END
