
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  112 (  112),  selected  112 , name T0283TS599_1
# Molecule2: number of CA atoms  112 (  888),  selected  112 , name T0283
# PARAMETERS: T0283TS599_1.T0283  -4  -ie  -d:5  -o1  -sia  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          3.914
LGA    S       2      S       2          4.473
LGA    F       3      F       3          0.691
LGA    I       4      I       4          1.551
LGA    E       5      E       5          1.999
LGA    K       6      K       6          1.432
LGA    M       7      M       7          1.128
LGA    I       8      I       8          1.923
LGA    G       9      G       9          1.690
LGA    S      10      S      10          0.970
LGA    L      11      L      11          1.399
LGA    N      12      N      12          1.409
LGA    D      13      D      13          0.702
LGA    K      14      K      14          0.999
LGA    R      15      R      15          0.921
LGA    E      16      E      16          0.469
LGA    W      17      W      17          0.711
LGA    K      18      K      18          1.008
LGA    A      19      A      19          0.807
LGA    M      20      M      20          0.957
LGA    E      21      E      21          1.420
LGA    A      22      A      22          1.810
LGA    R      23      R      23          1.886
LGA    A      24      A      24          2.120
LGA    K      25      K      25          2.417
LGA    A      26      A      26          2.554
LGA    L      27      L      27          2.201
LGA    P      28      P      28          1.658
LGA    K      29      K      29          1.512
LGA    E      30      E      30          1.103
LGA    Y      31      Y      31          1.072
LGA    H      32      H      32          1.511
LGA    H      33      H      33          2.132
LGA    A      34      A      34          1.918
LGA    Y      35      Y      35          1.363
LGA    K      36      K      36          2.284
LGA    A      37      A      37          3.207
LGA    I      38      I      38          2.947
LGA    Q      39      Q      39          2.721
LGA    -       -      K      40           -
LGA    K      40      Y      41          2.196
LGA    Y      41      M      42          3.458
LGA    M      42      W      43           -
LGA    -       -      T      44           -
LGA    -       -      S      45           -
LGA    -       -      G      46           -
LGA    W      43      G      47          1.929
LGA    T      44      P      48          2.903
LGA    S      45      T      49          2.367
LGA    G      46      D      50          3.315
LGA    G      47      W      51          2.851
LGA    -       -      Q      52           -
LGA    P      48      D      53           #
LGA    T      49      T      54          4.306
LGA    D      50      K      55          3.724
LGA    W      51      -       -           -
LGA    Q      52      R      56           #
LGA    D      53      I      57           #
LGA    T      54      F      58          3.083
LGA    K      55      G      59          2.262
LGA    R      56      G      60          2.391
LGA    I      57      I      61          3.784
LGA    F      58      L      62          5.218
LGA    -       -      D      63           -
LGA    G      59      L      64          2.433
LGA    G      60      F      65           #
LGA    I      61      E      66           -
LGA    L      62      E      67           -
LGA    D      63      G      68           #
LGA    -       -      A      69           -
LGA    -       -      A      70           -
LGA    -       -      E      71           -
LGA    -       -      G      72           -
LGA    -       -      K      73           -
LGA    -       -      K      74           -
LGA    -       -      V      75           -
LGA    -       -      T      76           -
LGA    L      64      D      77           #
LGA    F      65      L      78          4.500
LGA    E      66      T      79          4.869
LGA    E      67      -       -           -
LGA    G      68      G      80          3.479
LGA    A      69      E      81          4.391
LGA    A      70      -       -           -
LGA    E      71      -       -           -
LGA    G      72      -       -           -
LGA    K      73      -       -           -
LGA    K      74      D      82          4.343
LGA    V      75      V      83          4.844
LGA    T      76      A      84           #
LGA    D      77      A      85           #
LGA    L      78      -       -           -
LGA    T      79      F      86           #
LGA    G      80      C      87           -
LGA    E      81      -       -           -
LGA    D      82      -       -           -
LGA    V      83      D      88          3.836
LGA    A      84      E      89           #
LGA    A      85      L      90           -
LGA    -       -      M      91           -
LGA    F      86      K      92          5.047
LGA    C      87      D      93           -
LGA    D      88      T      94           -
LGA    E      89      K      95           #
LGA    L      90      T      96          2.809
LGA    M      91      W      97          5.110
LGA    K      92      M      98          2.217
LGA    D      93      D      99          3.643
LGA    T      94      K     100           #
LGA    K      95      -       -           -
LGA    T      96      Y     101          5.014
LGA    W      97      R     102           -
LGA    M      98      T     103           -
LGA    D      99      K     104           -
LGA    K     100      L     105           -
LGA    Y     101      N     106           -
LGA    R     102      D     107           -
LGA    T     103      S     108           -
LGA    K     104      I     109           -
LGA    L     105      G     110           -
LGA    N     106      R     111           -
LGA    D     107      D     112           -
LGA    S     108      -       -           -
LGA    I     109      -       -           -
LGA    G     110      -       -           -
LGA    R     111      -       -           -
LGA    D     112      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  112  112    5.0     67    2.82    65.67     42.982     2.293

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.305419 * X  +  -0.836619 * Y  +  -0.454739 * Z  +  22.026558
  Y_new =   0.917807 * X  +   0.385866 * Y  +  -0.093476 * Z  +  26.618816
  Z_new =   0.253672 * X  +  -0.388813 * Y  +   0.885706 * Z  +   3.815976 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.413658    2.727935  [ DEG:   -23.7009    156.2991 ]
  Theta =  -0.256475   -2.885118  [ DEG:   -14.6949   -165.3051 ]
  Phi   =   1.249552   -1.892040  [ DEG:    71.5941   -108.4059 ]
 
# END of job
REMARK  ----------------------------------------------------------
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0283TS599_1                                  
REMARK     2: T0283                                         
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0283TS599_1.T0283 -4 -ie -d:5 -o1 -sia 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  112  112   5.0   67   2.82   65.67  42.982
REMARK  ---------------------------------------------------------- 
MOLECULE T0283TS599_1
PFRMAT TS                                                                       
TARGET T0283                                                                    
MODEL  1                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      26.142   3.376  19.490  1.00  0.00              
ATOM      2  CA  SER     2      28.666   5.891  19.917  1.00  0.00              
ATOM      3  CA  PHE     3      30.563   8.802  20.792  1.00  0.00              
ATOM      4  CA  ILE     4      27.894   6.560  18.901  1.00  0.00              
ATOM      5  CA  GLU     5      25.505   9.553  18.851  1.00  0.00              
ATOM      6  CA  LYS     6      28.245  11.822  17.466  1.00  0.00              
ATOM      7  CA  MET     7      29.077   9.241  14.752  1.00  0.00              
ATOM      8  CA  ILE     8      25.394   8.851  13.761  1.00  0.00              
ATOM      9  CA  GLY     9      24.958  12.631  13.565  1.00  0.00              
ATOM     10  CA  SER    10      28.028  12.967  11.319  1.00  0.00              
ATOM     11  CA  LEU    11      26.748  10.160   9.021  1.00  0.00              
ATOM     12  CA  ASN    12      23.179  11.365   8.452  1.00  0.00              
ATOM     13  CA  ASP    13      24.521  14.876   7.735  1.00  0.00              
ATOM     14  CA  LYS    14      27.144  13.697   5.270  1.00  0.00              
ATOM     15  CA  ARG    15      24.705  11.584   3.172  1.00  0.00              
ATOM     16  CA  GLU    16      22.191  14.369   2.836  1.00  0.00              
ATOM     17  CA  TRP    17      24.954  16.744   1.826  1.00  0.00              
ATOM     18  CA  LYS    18      26.390  14.407  -0.777  1.00  0.00              
ATOM     19  CA  ALA    19      23.101  13.904  -2.518  1.00  0.00              
ATOM     20  CA  MET    20      22.581  17.695  -2.594  1.00  0.00              
ATOM     21  CA  GLU    21      26.062  18.190  -4.024  1.00  0.00              
ATOM     22  CA  ALA    22      25.493  15.680  -6.830  1.00  0.00              
ATOM     23  CA  ARG    23      22.275  17.541  -7.763  1.00  0.00              
ATOM     24  CA  ALA    24      24.216  20.834  -7.721  1.00  0.00              
ATOM     25  CA  LYS    25      27.083  19.601  -9.865  1.00  0.00              
ATOM     26  CA  ALA    26      24.495  18.412 -12.490  1.00  0.00              
ATOM     27  CA  LEU    27      22.656  21.687 -12.538  1.00  0.00              
ATOM     28  CA  PRO    28      22.953  24.434 -14.833  1.00  0.00              
ATOM     29  CA  LYS    29      25.431  27.164 -14.144  1.00  0.00              
ATOM     30  CA  GLU    30      22.591  29.665 -13.531  1.00  0.00              
ATOM     31  CA  TYR    31      21.222  27.503 -10.780  1.00  0.00              
ATOM     32  CA  HIS    32      24.573  26.670  -9.083  1.00  0.00              
ATOM     33  CA  HIS    33      25.375  30.373  -8.666  1.00  0.00              
ATOM     34  CA  ALA    34      21.892  31.073  -7.280  1.00  0.00              
ATOM     35  CA  TYR    35      22.218  28.152  -4.854  1.00  0.00              
ATOM     36  CA  LYS    36      25.565  29.442  -3.606  1.00  0.00              
ATOM     37  CA  ALA    37      24.069  32.917  -3.103  1.00  0.00              
ATOM     38  CA  ILE    38      21.105  31.447  -1.202  1.00  0.00              
ATOM     39  CA  GLN    39      23.464  29.386   1.010  1.00  0.00              
ATOM     40  CA  LYS    40      25.440  32.479   1.938  1.00  0.00              
ATOM     41  CA  TYR    41      22.320  34.485   2.900  1.00  0.00              
ATOM     42  CA  MET    42      20.832  31.571   4.899  1.00  0.00              
ATOM     43  CA  TRP    43      23.818  30.452   6.954  1.00  0.00              
ATOM     44  CA  THR    44      23.030  26.996   8.176  1.00  0.00              
ATOM     45  CA  SER    45      24.426  25.978  11.509  1.00  0.00              
ATOM     46  CA  GLY    46      24.979  22.280  11.258  1.00  0.00              
ATOM     47  CA  GLY    47      23.942  21.507   7.759  1.00  0.00              
ATOM     48  CA  PRO    48      21.058  22.086   5.523  1.00  0.00              
ATOM     49  CA  THR    49      18.028  20.901   7.392  1.00  0.00              
ATOM     50  CA  ASP    50      16.499  18.253   5.222  1.00  0.00              
ATOM     51  CA  TRP    51      18.047  18.747   1.810  1.00  0.00              
ATOM     52  CA  GLN    52      14.700  18.490  -0.016  1.00  0.00              
ATOM     53  CA  ASP    53      13.113  21.274   2.040  1.00  0.00              
ATOM     54  CA  THR    54      16.037  23.602   1.664  1.00  0.00              
ATOM     55  CA  LYS    55      16.438  23.208  -2.096  1.00  0.00              
ATOM     56  CA  ARG    56      12.702  23.848  -2.655  1.00  0.00              
ATOM     57  CA  ILE    57      12.940  27.060  -0.588  1.00  0.00              
ATOM     58  CA  PHE    58      16.000  28.222  -2.574  1.00  0.00              
ATOM     59  CA  GLY    59      14.271  27.441  -5.826  1.00  0.00              
ATOM     60  CA  GLY    60      11.320  29.685  -4.770  1.00  0.00              
ATOM     61  CA  ILE    61      13.726  32.512  -3.822  1.00  0.00              
ATOM     62  CA  LEU    62      15.523  32.198  -7.170  1.00  0.00              
ATOM     63  CA  ASP    63      12.230  32.263  -9.060  1.00  0.00              
ATOM     64  CA  LEU    64      11.245  35.506  -7.251  1.00  0.00              
ATOM     65  CA  PHE    65      14.556  37.106  -8.090  1.00  0.00              
ATOM     66  CA  GLU    66      14.249  36.099 -11.765  1.00  0.00              
ATOM     67  CA  GLU    67      10.721  37.566 -11.963  1.00  0.00              
ATOM     68  CA  GLY    68      11.989  40.798 -10.353  1.00  0.00              
ATOM     69  CA  ALA    69      14.852  40.964 -12.860  1.00  0.00              
ATOM     70  CA  ALA    70      12.350  40.545 -15.677  1.00  0.00              
ATOM     71  CA  GLU    71      10.237  43.432 -14.351  1.00  0.00              
ATOM     72  CA  GLY    72      13.271  45.672 -13.845  1.00  0.00              
ATOM     73  CA  LYS    73      13.315  45.752 -10.100  1.00  0.00              
ATOM     74  CA  LYS    74      16.259  44.946  -7.915  1.00  0.00              
ATOM     75  CA  VAL    75      15.938  41.895  -5.604  1.00  0.00              
ATOM     76  CA  THR    76      16.121  44.033  -2.470  1.00  0.00              
ATOM     77  CA  ASP    77      13.426  46.331  -3.915  1.00  0.00              
ATOM     78  CA  LEU    78      11.107  43.405  -4.778  1.00  0.00              
ATOM     79  CA  THR    79      11.349  41.922  -1.294  1.00  0.00              
ATOM     80  CA  GLY    80      11.139  45.255   0.558  1.00  0.00              
ATOM     81  CA  GLU    81      13.890  46.069   3.035  1.00  0.00              
ATOM     82  CA  ASP    82      12.615  43.814   5.877  1.00  0.00              
ATOM     83  CA  VAL    83      13.809  40.751   3.902  1.00  0.00              
ATOM     84  CA  ALA    84      17.394  42.060   3.652  1.00  0.00              
ATOM     85  CA  ALA    85      17.528  42.795   7.429  1.00  0.00              
ATOM     86  CA  PHE    86      16.210  39.323   8.122  1.00  0.00              
ATOM     87  CA  CYS    87      18.909  37.793   5.876  1.00  0.00              
ATOM     88  CA  ASP    88      21.629  39.806   7.674  1.00  0.00              
ATOM     89  CA  GLU    89      20.246  38.653  11.072  1.00  0.00              
ATOM     90  CA  LEU    90      20.245  35.015   9.909  1.00  0.00              
ATOM     91  CA  MET    91      23.804  35.219   8.756  1.00  0.00              
ATOM     92  CA  LYS    92      25.031  36.719  12.045  1.00  0.00              
ATOM     93  CA  ASP    93      23.191  34.148  14.192  1.00  0.00              
ATOM     94  CA  THR    94      24.490  31.163  12.173  1.00  0.00              
ATOM     95  CA  LYS    95      28.134  31.954  12.855  1.00  0.00              
ATOM     96  CA  THR    96      27.660  32.203  16.646  1.00  0.00              
ATOM     97  CA  TRP    97      25.789  28.892  16.674  1.00  0.00              
ATOM     98  CA  MET    98      28.519  27.129  14.623  1.00  0.00              
ATOM     99  CA  ASP    99      31.187  28.233  17.084  1.00  0.00              
ATOM    100  CA  LYS   100      29.094  26.956  20.013  1.00  0.00              
ATOM    101  CA  TYR   101      28.460  23.591  18.324  1.00  0.00              
ATOM    102  CA  ARG   102      32.168  23.054  17.556  1.00  0.00              
ATOM    103  CA  THR   103      33.006  23.818  21.139  1.00  0.00              
ATOM    104  CA  LYS   104      30.391  21.367  22.433  1.00  0.00              
ATOM    105  CA  LEU   105      31.673  18.615  20.140  1.00  0.00              
ATOM    106  CA  ASN   106      35.271  19.309  21.178  1.00  0.00              
ATOM    107  CA  ASP   107      34.268  19.065  24.856  1.00  0.00              
ATOM    108  CA  SER   108      32.464  15.795  24.256  1.00  0.00              
ATOM    109  CA  ILE   109      35.522  14.398  22.424  1.00  0.00              
ATOM    110  CA  GLY   110      37.978  15.620  25.535  1.00  0.00              
ATOM    111  CA  ARG   111      35.940  12.683  25.903  1.00  0.00              
ATOM    112  CA  ASP   112      34.185   9.865  23.312  1.00  0.00              
TER                                                                             
END
