
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  112 (  112),  selected  112 , name T0283TS599_2
# Molecule2: number of CA atoms  112 (  888),  selected  112 , name T0283
# PARAMETERS: T0283TS599_2.T0283  -4  -ie  -d:5  -o1  -sia  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          3.953
LGA    S       2      S       2          3.303
LGA    F       3      F       3          1.892
LGA    I       4      I       4          2.612
LGA    E       5      E       5          2.480
LGA    K       6      K       6          1.478
LGA    M       7      M       7          1.769
LGA    I       8      I       8          2.331
LGA    G       9      G       9          1.657
LGA    S      10      S      10          1.150
LGA    L      11      L      11          1.550
LGA    N      12      N      12          1.149
LGA    D      13      D      13          0.507
LGA    K      14      K      14          0.705
LGA    R      15      R      15          0.419
LGA    E      16      E      16          0.378
LGA    W      17      W      17          0.516
LGA    K      18      K      18          1.195
LGA    A      19      A      19          1.527
LGA    M      20      M      20          1.519
LGA    E      21      E      21          1.722
LGA    A      22      A      22          2.732
LGA    R      23      R      23          3.076
LGA    A      24      A      24          2.778
LGA    K      25      K      25          3.399
LGA    A      26      A      26          4.242
LGA    L      27      L      27          3.528
LGA    P      28      P      28          2.826
LGA    K      29      K      29          1.105
LGA    E      30      E      30          1.480
LGA    Y      31      Y      31          1.578
LGA    H      32      H      32          0.779
LGA    H      33      H      33          1.794
LGA    A      34      A      34          2.305
LGA    Y      35      Y      35          1.476
LGA    K      36      K      36          2.468
LGA    A      37      A      37          3.970
LGA    I      38      I      38          4.036
LGA    Q      39      Q      39          3.427
LGA    -       -      K      40           -
LGA    K      40      Y      41          3.003
LGA    Y      41      M      42           #
LGA    -       -      W      43           -
LGA    -       -      T      44           -
LGA    -       -      S      45           -
LGA    M      42      G      46           #
LGA    W      43      G      47          2.673
LGA    T      44      P      48          3.554
LGA    S      45      T      49          2.821
LGA    G      46      D      50          3.359
LGA    G      47      W      51          3.659
LGA    -       -      Q      52           -
LGA    -       -      D      53           -
LGA    -       -      T      54           -
LGA    P      48      K      55          2.295
LGA    T      49      R      56          3.256
LGA    D      50      I      57           -
LGA    W      51      -       -           -
LGA    Q      52      -       -           -
LGA    D      53      F      58           #
LGA    T      54      G      59          0.968
LGA    -       -      G      60           -
LGA    K      55      I      61           #
LGA    R      56      L      62          4.137
LGA    I      57      D      63          3.775
LGA    F      58      L      64          3.721
LGA    G      59      -       -           -
LGA    G      60      F      65          5.000
LGA    I      61      E      66           -
LGA    L      62      E      67           -
LGA    D      63      G      68          2.947
LGA    L      64      A      69           -
LGA    -       -      A      70           -
LGA    -       -      E      71           -
LGA    -       -      G      72           -
LGA    -       -      K      73           -
LGA    -       -      K      74           -
LGA    -       -      V      75           -
LGA    F      65      T      76          2.902
LGA    E      66      D      77          3.204
LGA    E      67      L      78           #
LGA    G      68      T      79           -
LGA    A      69      -       -           -
LGA    A      70      -       -           -
LGA    E      71      -       -           -
LGA    G      72      -       -           -
LGA    K      73      -       -           -
LGA    K      74      G      80           #
LGA    V      75      E      81          3.309
LGA    T      76      D      82          3.945
LGA    D      77      V      83           -
LGA    L      78      -       -           -
LGA    T      79      -       -           -
LGA    G      80      -       -           -
LGA    E      81      -       -           -
LGA    D      82      -       -           -
LGA    V      83      A      84           #
LGA    A      84      A      85          1.087
LGA    A      85      -       -           -
LGA    F      86      F      86          5.242
LGA    C      87      C      87          2.591
LGA    D      88      D      88          4.043
LGA    -       -      E      89           -
LGA    -       -      L      90           -
LGA    E      89      M      91          5.054
LGA    L      90      K      92           #
LGA    M      91      D      93           -
LGA    K      92      -       -           -
LGA    D      93      T      94          5.207
LGA    -       -      K      95           -
LGA    T      94      T      96          2.366
LGA    K      95      W      97          0.940
LGA    -       -      M      98           -
LGA    T      96      D      99          4.126
LGA    W      97      K     100           #
LGA    M      98      -       -           -
LGA    D      99      Y     101           #
LGA    K     100      R     102           -
LGA    Y     101      T     103           -
LGA    R     102      K     104           -
LGA    T     103      L     105           -
LGA    K     104      N     106           -
LGA    L     105      D     107           -
LGA    N     106      S     108           -
LGA    D     107      I     109           -
LGA    S     108      G     110           -
LGA    I     109      R     111           -
LGA    G     110      D     112           -
LGA    R     111      -       -           -
LGA    D     112      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  112  112    5.0     66    2.87    66.67     41.531     2.222

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.908088 * X  +  -0.201804 * Y  +  -0.366948 * Z  +  20.562090
  Y_new =  -0.306063 * X  +  -0.917881 * Y  +  -0.252625 * Z  +  26.318209
  Z_new =  -0.285834 * X  +   0.341715 * Y  +  -0.895282 * Z  +   2.283767 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.776974   -0.364618  [ DEG:   159.1089    -20.8911 ]
  Theta =   0.289877    2.851716  [ DEG:    16.6087    163.3913 ]
  Phi   =  -0.325084    2.816509  [ DEG:   -18.6259    161.3741 ]
 
# END of job
REMARK  ----------------------------------------------------------
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0283TS599_2                                  
REMARK     2: T0283                                         
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0283TS599_2.T0283 -4 -ie -d:5 -o1 -sia 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  112  112   5.0   66   2.87   66.67  41.531
REMARK  ---------------------------------------------------------- 
MOLECULE T0283TS599_2
PFRMAT TS                                                                       
TARGET T0283                                                                    
MODEL  2                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      25.412   3.727  19.412  1.00  0.00              
ATOM      2  CA  SER     2      27.392   6.628  20.161  1.00  0.00              
ATOM      3  CA  PHE     3      28.633   9.818  21.247  1.00  0.00              
ATOM      4  CA  ILE     4      26.661   7.097  18.992  1.00  0.00              
ATOM      5  CA  GLU     5      23.887   9.713  18.555  1.00  0.00              
ATOM      6  CA  LYS     6      26.419  12.343  17.570  1.00  0.00              
ATOM      7  CA  MET     7      28.025   9.980  15.021  1.00  0.00              
ATOM      8  CA  ILE     8      24.646   9.053  13.511  1.00  0.00              
ATOM      9  CA  GLY     9      23.696  12.712  13.193  1.00  0.00              
ATOM     10  CA  SER    10      26.974  13.572  11.491  1.00  0.00              
ATOM     11  CA  LEU    11      26.541  10.705   9.018  1.00  0.00              
ATOM     12  CA  ASN    12      22.982  11.392   7.863  1.00  0.00              
ATOM     13  CA  ASP    13      23.929  15.049   7.362  1.00  0.00              
ATOM     14  CA  LYS    14      27.046  14.248   5.342  1.00  0.00              
ATOM     15  CA  ARG    15      25.261  11.912   2.917  1.00  0.00              
ATOM     16  CA  GLU    16      22.509  14.357   2.175  1.00  0.00              
ATOM     17  CA  TRP    17      25.085  17.101   1.627  1.00  0.00              
ATOM     18  CA  LYS    18      27.169  14.963  -0.767  1.00  0.00              
ATOM     19  CA  ALA    19      24.129  14.065  -2.870  1.00  0.00              
ATOM     20  CA  MET    20      23.130  17.762  -3.095  1.00  0.00              
ATOM     21  CA  GLU    21      26.694  18.657  -4.116  1.00  0.00              
ATOM     22  CA  ALA    22      26.682  16.027  -6.844  1.00  0.00              
ATOM     23  CA  ARG    23      23.452  17.536  -8.243  1.00  0.00              
ATOM     24  CA  ALA    24      24.972  21.008  -8.105  1.00  0.00              
ATOM     25  CA  LYS    25      28.175  20.004  -9.879  1.00  0.00              
ATOM     26  CA  ALA    26      26.176  18.278 -12.661  1.00  0.00              
ATOM     27  CA  LEU    27      23.931  21.242 -13.227  1.00  0.00              
ATOM     28  CA  PRO    28      24.267  23.537 -16.043  1.00  0.00              
ATOM     29  CA  LYS    29      25.996  26.808 -15.386  1.00  0.00              
ATOM     30  CA  GLU    30      22.750  28.830 -15.374  1.00  0.00              
ATOM     31  CA  TYR    31      21.377  26.746 -12.568  1.00  0.00              
ATOM     32  CA  HIS    32      24.624  26.617 -10.528  1.00  0.00              
ATOM     33  CA  HIS    33      24.851  30.409 -10.292  1.00  0.00              
ATOM     34  CA  ALA    34      21.234  30.620  -9.164  1.00  0.00              
ATOM     35  CA  TYR    35      21.839  27.870  -6.594  1.00  0.00              
ATOM     36  CA  LYS    36      24.780  29.748  -5.148  1.00  0.00              
ATOM     37  CA  ALA    37      22.732  32.954  -4.859  1.00  0.00              
ATOM     38  CA  ILE    38      19.903  31.057  -3.188  1.00  0.00              
ATOM     39  CA  GLN    39      22.351  29.460  -0.705  1.00  0.00              
ATOM     40  CA  LYS    40      23.788  32.847   0.174  1.00  0.00              
ATOM     41  CA  TYR    41      20.357  34.330   0.970  1.00  0.00              
ATOM     42  CA  MET    42      19.298  31.196   2.912  1.00  0.00              
ATOM     43  CA  TRP    43      22.339  30.757   5.187  1.00  0.00              
ATOM     44  CA  THR    44      22.272  27.201   6.372  1.00  0.00              
ATOM     45  CA  SER    45      23.648  26.550   9.799  1.00  0.00              
ATOM     46  CA  GLY    46      24.395  22.897   9.823  1.00  0.00              
ATOM     47  CA  GLY    47      23.425  21.747   6.454  1.00  0.00              
ATOM     48  CA  PRO    48      20.601  22.063   4.058  1.00  0.00              
ATOM     49  CA  THR    49      17.524  20.998   5.906  1.00  0.00              
ATOM     50  CA  ASP    50      16.261  17.995   3.987  1.00  0.00              
ATOM     51  CA  TRP    51      18.083  18.321   0.625  1.00  0.00              
ATOM     52  CA  GLN    52      14.919  17.627  -1.317  1.00  0.00              
ATOM     53  CA  ASP    53      13.019  20.472   0.386  1.00  0.00              
ATOM     54  CA  THR    54      15.816  22.989  -0.228  1.00  0.00              
ATOM     55  CA  LYS    55      16.182  22.145  -3.859  1.00  0.00              
ATOM     56  CA  ARG    56      12.456  22.468  -4.591  1.00  0.00              
ATOM     57  CA  ILE    57      12.349  25.869  -2.887  1.00  0.00              
ATOM     58  CA  PHE    58      15.400  27.066  -4.805  1.00  0.00              
ATOM     59  CA  GLY    59      13.863  25.872  -8.060  1.00  0.00              
ATOM     60  CA  GLY    60      10.690  27.875  -7.349  1.00  0.00              
ATOM     61  CA  ILE    61      12.769  31.021  -6.602  1.00  0.00              
ATOM     62  CA  LEU    62      14.781  30.504  -9.794  1.00  0.00              
ATOM     63  CA  ASP    63      11.551  30.120 -11.832  1.00  0.00              
ATOM     64  CA  LEU    64      10.326  33.431 -10.485  1.00  0.00              
ATOM     65  CA  PHE    65      13.624  35.032 -11.450  1.00  0.00              
ATOM     66  CA  GLU    66      13.466  33.598 -14.958  1.00  0.00              
ATOM     67  CA  GLU    67       9.954  35.015 -15.414  1.00  0.00              
ATOM     68  CA  GLY    68      11.133  38.436 -14.161  1.00  0.00              
ATOM     69  CA  ALA    69      14.065  38.278 -16.644  1.00  0.00              
ATOM     70  CA  ALA    70      11.603  37.434 -19.405  1.00  0.00              
ATOM     71  CA  GLU    71       9.458  40.462 -18.520  1.00  0.00              
ATOM     72  CA  GLY    72      12.486  42.767 -18.315  1.00  0.00              
ATOM     73  CA  LYS    73      12.564  43.372 -14.704  1.00  0.00              
ATOM     74  CA  LYS    74      15.152  42.641 -12.109  1.00  0.00              
ATOM     75  CA  VAL    75      14.056  40.403  -9.193  1.00  0.00              
ATOM     76  CA  THR    76      14.261  43.117  -6.566  1.00  0.00              
ATOM     77  CA  ASP    77      12.178  45.465  -8.724  1.00  0.00              
ATOM     78  CA  LEU    78       9.413  42.943  -9.457  1.00  0.00              
ATOM     79  CA  THR    79       8.979  41.995  -5.809  1.00  0.00              
ATOM     80  CA  GLY    80       9.212  45.374  -3.942  1.00  0.00              
ATOM     81  CA  GLU    81      11.990  44.799  -1.352  1.00  0.00              
ATOM     82  CA  ASP    82      10.618  41.487  -0.043  1.00  0.00              
ATOM     83  CA  VAL    83      13.389  39.193  -1.352  1.00  0.00              
ATOM     84  CA  ALA    84      16.253  41.325   0.006  1.00  0.00              
ATOM     85  CA  ALA    85      14.668  41.609   3.410  1.00  0.00              
ATOM     86  CA  PHE    86      14.107  37.875   3.534  1.00  0.00              
ATOM     87  CA  CYS    87      17.741  37.166   2.573  1.00  0.00              
ATOM     88  CA  ASP    88      19.004  39.537   5.284  1.00  0.00              
ATOM     89  CA  GLU    89      16.732  37.857   7.850  1.00  0.00              
ATOM     90  CA  LEU    90      17.835  34.386   6.916  1.00  0.00              
ATOM     91  CA  MET    91      21.492  35.188   7.122  1.00  0.00              
ATOM     92  CA  LYS    92      21.145  36.772  10.526  1.00  0.00              
ATOM     93  CA  ASP    93      19.110  33.843  11.976  1.00  0.00              
ATOM     94  CA  THR    94      21.610  31.294  10.643  1.00  0.00              
ATOM     95  CA  LYS    95      24.575  32.640  12.636  1.00  0.00              
ATOM     96  CA  THR    96      22.601  32.432  15.877  1.00  0.00              
ATOM     97  CA  TRP    97      21.605  28.872  15.024  1.00  0.00              
ATOM     98  CA  MET    98      25.170  27.778  14.246  1.00  0.00              
ATOM     99  CA  ASP    99      26.384  29.184  17.584  1.00  0.00              
ATOM    100  CA  LYS   100      23.580  27.371  19.423  1.00  0.00              
ATOM    101  CA  TYR   101      24.404  24.049  17.701  1.00  0.00              
ATOM    102  CA  ARG   102      28.128  24.357  18.558  1.00  0.00              
ATOM    103  CA  THR   103      27.217  24.956  22.159  1.00  0.00              
ATOM    104  CA  LYS   104      24.844  21.974  22.258  1.00  0.00              
ATOM    105  CA  LEU   105      27.501  19.670  20.758  1.00  0.00              
ATOM    106  CA  ASN   106      30.113  20.943  23.213  1.00  0.00              
ATOM    107  CA  ASP   107      27.721  20.292  26.130  1.00  0.00              
ATOM    108  CA  SER   108      26.986  16.739  24.974  1.00  0.00              
ATOM    109  CA  ILE   109      30.745  16.124  24.611  1.00  0.00              
ATOM    110  CA  GLY   110      31.522  17.551  28.258  1.00  0.00              
ATOM    111  CA  ARG   111      29.663  14.484  28.481  1.00  0.00              
ATOM    112  CA  ASP   112      30.479  11.607  25.522  1.00  0.00              
TER                                                                             
END
