
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  112 (  112),  selected  112 , name T0283TS599_3
# Molecule2: number of CA atoms  112 (  888),  selected  112 , name T0283
# PARAMETERS: T0283TS599_3.T0283  -4  -ie  -d:5  -o1  -sia  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    -       -      M       1           -
LGA    M       1      S       2           #
LGA    S       2      F       3           #
LGA    F       3      I       4          3.720
LGA    I       4      E       5          4.926
LGA    E       5      -       -           -
LGA    K       6      K       6          3.172
LGA    M       7      M       7          3.860
LGA    I       8      I       8           #
LGA    -       -      G       9           -
LGA    G       9      S      10          2.893
LGA    S      10      L      11           -
LGA    L      11      N      12           -
LGA    N      12      D      13           -
LGA    D      13      K      14           -
LGA    K      14      R      15           -
LGA    R      15      E      16           -
LGA    E      16      W      17           -
LGA    W      17      K      18           -
LGA    K      18      A      19           -
LGA    A      19      M      20           -
LGA    M      20      E      21           -
LGA    E      21      A      22           -
LGA    A      22      R      23           -
LGA    R      23      A      24           -
LGA    A      24      K      25           -
LGA    K      25      A      26           -
LGA    A      26      L      27           -
LGA    L      27      P      28           -
LGA    P      28      K      29           -
LGA    K      29      E      30           -
LGA    E      30      Y      31           -
LGA    Y      31      H      32           -
LGA    H      32      H      33           -
LGA    H      33      A      34           -
LGA    A      34      Y      35           -
LGA    Y      35      K      36           -
LGA    -       -      A      37           -
LGA    -       -      I      38           -
LGA    -       -      Q      39           -
LGA    -       -      K      40           -
LGA    -       -      Y      41           -
LGA    -       -      M      42           -
LGA    -       -      W      43           -
LGA    -       -      T      44           -
LGA    K      36      S      45          4.570
LGA    A      37      G      46          5.014
LGA    I      38      -       -           -
LGA    Q      39      -       -           -
LGA    K      40      -       -           -
LGA    Y      41      -       -           -
LGA    M      42      -       -           -
LGA    W      43      -       -           -
LGA    T      44      -       -           -
LGA    S      45      -       -           -
LGA    G      46      -       -           -
LGA    G      47      G      47          4.601
LGA    P      48      P      48          4.697
LGA    T      49      T      49          1.154
LGA    D      50      D      50          1.863
LGA    W      51      W      51          1.644
LGA    Q      52      Q      52          0.915
LGA    D      53      D      53          1.297
LGA    T      54      T      54          1.481
LGA    K      55      K      55          1.139
LGA    R      56      R      56          1.195
LGA    I      57      I      57          0.933
LGA    F      58      F      58          0.483
LGA    G      59      G      59          0.263
LGA    G      60      G      60          0.573
LGA    I      61      I      61          0.598
LGA    L      62      L      62          0.664
LGA    D      63      D      63          0.677
LGA    L      64      L      64          0.179
LGA    F      65      F      65          0.454
LGA    E      66      E      66          0.632
LGA    E      67      E      67          0.312
LGA    G      68      G      68          0.427
LGA    A      69      A      69          0.463
LGA    A      70      A      70          0.705
LGA    E      71      E      71          1.245
LGA    G      72      G      72          1.408
LGA    K      73      K      73          0.410
LGA    K      74      K      74          1.147
LGA    V      75      V      75          0.997
LGA    T      76      T      76          1.750
LGA    D      77      D      77          1.730
LGA    L      78      L      78          1.192
LGA    T      79      T      79          0.769
LGA    G      80      G      80          0.651
LGA    E      81      E      81          1.232
LGA    D      82      D      82          1.818
LGA    V      83      V      83          1.403
LGA    A      84      -       -           -
LGA    A      85      -       -           -
LGA    F      86      -       -           -
LGA    C      87      A      84          4.512
LGA    D      88      A      85           -
LGA    E      89      F      86           -
LGA    L      90      C      87           -
LGA    M      91      D      88           -
LGA    K      92      E      89           -
LGA    D      93      L      90           -
LGA    T      94      M      91           -
LGA    K      95      K      92           -
LGA    T      96      D      93           -
LGA    W      97      T      94           -
LGA    M      98      K      95           -
LGA    D      99      T      96           -
LGA    K     100      W      97           -
LGA    Y     101      M      98           -
LGA    R     102      D      99           -
LGA    T     103      K     100           -
LGA    K     104      Y     101           -
LGA    L     105      R     102           -
LGA    N     106      T     103           -
LGA    D     107      K     104           -
LGA    S     108      L     105           -
LGA    I     109      N     106           -
LGA    G     110      D     107           -
LGA    R     111      S     108           -
LGA    D     112      I     109           -
LGA    -       -      G     110           -
LGA    -       -      R     111           -
LGA    -       -      D     112           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  112  112    5.0     45    2.22    86.67     34.425     1.940

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.014915 * X  +   0.989182 * Y  +  -0.145931 * Z  +  26.086573
  Y_new =  -0.968026 * X  +  -0.022266 * Y  +  -0.249861 * Z  +  32.292809
  Z_new =  -0.250407 * X  +   0.144992 * Y  +   0.957222 * Z  +   5.303878 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.150329   -2.991264  [ DEG:     8.6132   -171.3868 ]
  Theta =   0.253101    2.888492  [ DEG:    14.5016    165.4984 ]
  Phi   =  -1.555390    1.586202  [ DEG:   -89.1173     90.8827 ]
 
# END of job
REMARK  ----------------------------------------------------------
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0283TS599_3                                  
REMARK     2: T0283                                         
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0283TS599_3.T0283 -4 -ie -d:5 -o1 -sia 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  112  112   5.0   45   2.22   86.67  34.425
REMARK  ---------------------------------------------------------- 
MOLECULE T0283TS599_3
PFRMAT TS                                                                       
TARGET T0283                                                                    
MODEL  3                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      32.761   6.746  17.892  1.00  0.00              
ATOM      2  CA  SER     2      29.556   4.867  16.720  1.00  0.00              
ATOM      3  CA  PHE     3      26.017   5.000  16.090  1.00  0.00              
ATOM      4  CA  ILE     4      29.787   6.156  16.200  1.00  0.00              
ATOM      5  CA  GLU     5      29.285   7.989  12.897  1.00  0.00              
ATOM      6  CA  LYS     6      26.147   9.701  14.229  1.00  0.00              
ATOM      7  CA  MET     7      27.937  10.783  17.431  1.00  0.00              
ATOM      8  CA  ILE     8      30.874  12.195  15.414  1.00  0.00              
ATOM      9  CA  GLY     9      28.441  14.065  13.124  1.00  0.00              
ATOM     10  CA  SER    10      26.660  15.703  16.101  1.00  0.00              
ATOM     11  CA  LEU    11      30.092  16.720  17.470  1.00  0.00              
ATOM     12  CA  ASN    12      31.211  18.216  14.097  1.00  0.00              
ATOM     13  CA  ASP    13      27.952  20.215  13.812  1.00  0.00              
ATOM     14  CA  LYS    14      28.368  21.555  17.374  1.00  0.00              
ATOM     15  CA  ARG    15      32.000  22.597  16.686  1.00  0.00              
ATOM     16  CA  GLU    16      31.060  24.422  13.444  1.00  0.00              
ATOM     17  CA  TRP    17      28.275  26.214  15.347  1.00  0.00              
ATOM     18  CA  LYS    18      30.722  27.312  18.074  1.00  0.00              
ATOM     19  CA  ALA    19      33.094  28.676  15.432  1.00  0.00              
ATOM     20  CA  MET    20      30.238  30.599  13.785  1.00  0.00              
ATOM     21  CA  GLU    21      29.207  31.999  17.146  1.00  0.00              
ATOM     22  CA  ALA    22      32.768  33.101  17.858  1.00  0.00              
ATOM     23  CA  ARG    23      32.990  34.864  14.476  1.00  0.00              
ATOM     24  CA  ALA    24      29.659  36.624  15.140  1.00  0.00              
ATOM     25  CA  LYS    25      30.699  37.774  18.601  1.00  0.00              
ATOM     26  CA  ALA    26      33.936  39.323  17.202  1.00  0.00              
ATOM     27  CA  LEU    27      32.258  41.157  14.382  1.00  0.00              
ATOM     28  CA  PRO    28      30.869  44.494  14.870  1.00  0.00              
ATOM     29  CA  LYS    29      27.091  44.641  14.967  1.00  0.00              
ATOM     30  CA  GLU    30      26.785  46.587  11.765  1.00  0.00              
ATOM     31  CA  TYR    31      28.567  43.770   9.897  1.00  0.00              
ATOM     32  CA  HIS    32      27.058  40.657  11.423  1.00  0.00              
ATOM     33  CA  HIS    33      23.451  41.802  10.948  1.00  0.00              
ATOM     34  CA  ALA    34      24.004  42.822   7.323  1.00  0.00              
ATOM     35  CA  TYR    35      25.689  39.564   6.584  1.00  0.00              
ATOM     36  CA  LYS    36      22.829  37.554   8.169  1.00  0.00              
ATOM     37  CA  ALA    37      20.187  39.546   6.242  1.00  0.00              
ATOM     38  CA  ILE    38      22.101  38.925   3.029  1.00  0.00              
ATOM     39  CA  GLN    39      22.368  35.175   3.711  1.00  0.00              
ATOM     40  CA  LYS    40      18.662  35.006   4.275  1.00  0.00              
ATOM     41  CA  TYR    41      17.700  36.740   0.986  1.00  0.00              
ATOM     42  CA  MET    42      20.045  34.474  -0.964  1.00  0.00              
ATOM     43  CA  TRP    43      19.232  31.163   0.593  1.00  0.00              
ATOM     44  CA  THR    44      22.590  29.563   1.242  1.00  0.00              
ATOM     45  CA  SER    45      22.545  25.750   1.548  1.00  0.00              
ATOM     46  CA  GLY    46      25.311  25.159   3.998  1.00  0.00              
ATOM     47  CA  GLY    47      25.111  28.249   6.141  1.00  0.00              
ATOM     48  CA  PRO    48      25.441  26.808   9.616  1.00  0.00              
ATOM     49  CA  THR    49      22.431  28.177  11.412  1.00  0.00              
ATOM     50  CA  ASP    50      21.145  25.019  13.240  1.00  0.00              
ATOM     51  CA  TRP    51      22.230  22.521  10.605  1.00  0.00              
ATOM     52  CA  GLN    52      18.999  20.644  10.213  1.00  0.00              
ATOM     53  CA  ASP    53      16.896  23.788   9.796  1.00  0.00              
ATOM     54  CA  THR    54      19.385  25.086   7.223  1.00  0.00              
ATOM     55  CA  LYS    55      19.518  21.955   5.051  1.00  0.00              
ATOM     56  CA  ARG    56      15.730  21.998   4.809  1.00  0.00              
ATOM     57  CA  ILE    57      15.908  25.633   3.697  1.00  0.00              
ATOM     58  CA  PHE    58      18.511  24.789   1.079  1.00  0.00              
ATOM     59  CA  GLY    59      16.349  21.915  -0.227  1.00  0.00              
ATOM     60  CA  GLY    60      13.394  24.279  -0.588  1.00  0.00              
ATOM     61  CA  ILE    61      15.512  26.811  -2.468  1.00  0.00              
ATOM     62  CA  LEU    62      16.835  24.082  -4.774  1.00  0.00              
ATOM     63  CA  ASP    63      13.299  22.868  -5.468  1.00  0.00              
ATOM     64  CA  LEU    64      12.331  26.420  -6.474  1.00  0.00              
ATOM     65  CA  PHE    65      15.263  26.670  -8.824  1.00  0.00              
ATOM     66  CA  GLU    66      14.460  23.309 -10.461  1.00  0.00              
ATOM     67  CA  GLU    67      10.826  24.384 -10.980  1.00  0.00              
ATOM     68  CA  GLY    68      11.995  27.713 -12.508  1.00  0.00              
ATOM     69  CA  ALA    69      14.358  25.737 -14.815  1.00  0.00              
ATOM     70  CA  ALA    70      11.466  23.485 -15.859  1.00  0.00              
ATOM     71  CA  GLU    71       9.257  26.550 -16.579  1.00  0.00              
ATOM     72  CA  GLY    72      11.954  28.196 -18.653  1.00  0.00              
ATOM     73  CA  LYS    73      12.740  31.007 -16.299  1.00  0.00              
ATOM     74  CA  LYS    74      16.264  31.812 -15.273  1.00  0.00              
ATOM     75  CA  VAL    75      17.118  31.668 -11.550  1.00  0.00              
ATOM     76  CA  THR    76      17.809  35.419 -11.365  1.00  0.00              
ATOM     77  CA  ASP    77      14.395  36.043 -13.012  1.00  0.00              
ATOM     78  CA  LEU    78      12.491  33.642 -10.720  1.00  0.00              
ATOM     79  CA  THR    79      14.269  35.100  -7.640  1.00  0.00              
ATOM     80  CA  GLY    80      13.615  38.671  -8.648  1.00  0.00              
ATOM     81  CA  GLU    81      16.277  41.313  -9.015  1.00  0.00              
ATOM     82  CA  ASP    82      16.129  42.341  -5.322  1.00  0.00              
ATOM     83  CA  VAL    83      18.047  39.209  -4.284  1.00  0.00              
ATOM     84  CA  ALA    84      20.779  39.975  -6.860  1.00  0.00              
ATOM     85  CA  ALA    85      21.136  43.589  -5.707  1.00  0.00              
ATOM     86  CA  PHE    86      21.291  42.516  -2.030  1.00  0.00              
ATOM     87  CA  CYS    87      23.958  39.890  -2.822  1.00  0.00              
ATOM     88  CA  ASP    88      26.015  42.466  -4.682  1.00  0.00              
ATOM     89  CA  GLU    89      25.776  44.925  -1.774  1.00  0.00              
ATOM     90  CA  LEU    90      26.805  42.313   0.731  1.00  0.00              
ATOM     91  CA  MET    91      29.770  41.131  -1.247  1.00  0.00              
ATOM     92  CA  LYS    92      31.069  44.710  -1.652  1.00  0.00              
ATOM     93  CA  ASP    93      30.596  45.203   2.067  1.00  0.00              
ATOM     94  CA  THR    94      32.474  41.921   2.892  1.00  0.00              
ATOM     95  CA  LYS    95      35.738  43.189   1.532  1.00  0.00              
ATOM     96  CA  THR    96      35.408  46.397   3.594  1.00  0.00              
ATOM     97  CA  TRP    97      34.600  44.378   6.705  1.00  0.00              
ATOM     98  CA  MET    98      37.601  42.120   6.247  1.00  0.00              
ATOM     99  CA  ASP    99      39.928  45.121   5.762  1.00  0.00              
ATOM    100  CA  LYS   100      38.576  46.725   8.939  1.00  0.00              
ATOM    101  CA  TYR   101      39.039  43.489  10.881  1.00  0.00              
ATOM    102  CA  ARG   102      42.600  43.150   9.561  1.00  0.00              
ATOM    103  CA  THR   103      43.338  46.676  10.648  1.00  0.00              
ATOM    104  CA  LYS   104      41.919  46.042  14.139  1.00  0.00              
ATOM    105  CA  LEU   105      44.043  42.862  14.475  1.00  0.00              
ATOM    106  CA  ASN   106      47.172  44.732  13.306  1.00  0.00              
ATOM    107  CA  ASP   107      46.514  47.441  15.872  1.00  0.00              
ATOM    108  CA  SER   108      46.097  44.840  18.652  1.00  0.00              
ATOM    109  CA  ILE   109      49.318  43.119  17.621  1.00  0.00              
ATOM    110  CA  GLY   110      51.318  46.705  17.616  1.00  0.00              
ATOM    111  CA  ARG   111      50.184  46.861  21.025  1.00  0.00              
ATOM    112  CA  ASP   112      51.798  43.030  20.432  1.00  0.00              
TER                                                                             
END
