
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  112 (  112),  selected  112 , name T0283TS599_4
# Molecule2: number of CA atoms  112 (  888),  selected  112 , name T0283
# PARAMETERS: T0283TS599_4.T0283  -4  -ie  -d:5  -o1  -sia  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1           -
LGA    S       2      S       2           -
LGA    F       3      F       3           -
LGA    I       4      I       4           -
LGA    E       5      E       5           -
LGA    K       6      -       -           -
LGA    M       7      -       -           -
LGA    I       8      -       -           -
LGA    G       9      -       -           -
LGA    S      10      -       -           -
LGA    L      11      K       6           #
LGA    -       -      M       7           -
LGA    -       -      I       8           -
LGA    N      12      G       9           #
LGA    D      13      -       -           -
LGA    K      14      -       -           -
LGA    R      15      S      10          4.142
LGA    E      16      L      11           -
LGA    W      17      N      12           -
LGA    -       -      D      13           -
LGA    K      18      K      14          3.259
LGA    A      19      R      15          4.507
LGA    M      20      E      16           #
LGA    E      21      W      17          4.454
LGA    A      22      K      18          2.013
LGA    R      23      A      19          2.775
LGA    A      24      M      20           #
LGA    K      25      E      21           #
LGA    A      26      A      22          4.373
LGA    L      27      R      23           #
LGA    P      28      -       -           -
LGA    K      29      -       -           -
LGA    E      30      -       -           -
LGA    Y      31      A      24          2.899
LGA    H      32      K      25          3.822
LGA    -       -      A      26           -
LGA    -       -      L      27           -
LGA    -       -      P      28           -
LGA    -       -      K      29           -
LGA    -       -      E      30           -
LGA    -       -      Y      31           -
LGA    -       -      H      32           -
LGA    H      33      H      33          3.260
LGA    A      34      A      34          4.268
LGA    Y      35      Y      35          3.132
LGA    K      36      K      36          1.874
LGA    A      37      A      37          3.245
LGA    I      38      I      38          4.177
LGA    Q      39      Q      39          3.309
LGA    -       -      K      40           -
LGA    K      40      Y      41          3.369
LGA    Y      41      M      42           #
LGA    M      42      W      43           -
LGA    -       -      T      44           -
LGA    -       -      S      45           -
LGA    W      43      G      46          5.051
LGA    T      44      G      47          2.926
LGA    S      45      P      48          3.391
LGA    G      46      T      49           #
LGA    G      47      -       -           -
LGA    P      48      -       -           -
LGA    T      49      -       -           -
LGA    D      50      D      50           #
LGA    W      51      W      51          3.539
LGA    Q      52      Q      52          3.207
LGA    D      53      D      53          4.705
LGA    T      54      T      54          4.049
LGA    K      55      K      55          1.255
LGA    R      56      R      56          2.681
LGA    I      57      I      57          3.385
LGA    F      58      F      58          2.200
LGA    G      59      G      59          0.668
LGA    G      60      G      60          1.889
LGA    I      61      I      61          1.803
LGA    L      62      L      62          1.008
LGA    D      63      D      63          1.101
LGA    L      64      L      64          0.469
LGA    F      65      F      65          0.995
LGA    E      66      E      66          1.744
LGA    E      67      E      67          1.762
LGA    G      68      G      68          1.588
LGA    A      69      A      69          2.104
LGA    A      70      A      70          2.429
LGA    E      71      E      71          2.267
LGA    G      72      G      72          2.500
LGA    K      73      K      73          2.524
LGA    K      74      K      74          2.638
LGA    V      75      V      75          2.353
LGA    T      76      T      76          2.345
LGA    D      77      D      77          1.885
LGA    L      78      L      78          2.325
LGA    T      79      T      79          3.698
LGA    G      80      G      80          3.597
LGA    E      81      E      81           #
LGA    D      82      -       -           -
LGA    V      83      -       -           -
LGA    A      84      D      82          4.093
LGA    -       -      V      83           -
LGA    -       -      A      84           -
LGA    A      85      A      85          2.609
LGA    F      86      F      86          4.276
LGA    C      87      C      87          2.373
LGA    D      88      D      88          4.787
LGA    E      89      E      89           #
LGA    -       -      L      90           -
LGA    L      90      M      91          4.978
LGA    M      91      K      92           -
LGA    K      92      D      93           -
LGA    D      93      T      94           -
LGA    T      94      K      95           #
LGA    -       -      T      96           -
LGA    K      95      W      97           #
LGA    T      96      M      98          3.156
LGA    W      97      D      99          2.359
LGA    M      98      K     100          4.337
LGA    D      99      Y     101          3.381
LGA    K     100      R     102          2.803
LGA    Y     101      T     103          4.768
LGA    R     102      -       -           -
LGA    T     103      -       -           -
LGA    K     104      K     104          1.751
LGA    L     105      L     105           -
LGA    N     106      N     106           -
LGA    -       -      D     107           -
LGA    D     107      S     108          4.672
LGA    S     108      I     109           -
LGA    I     109      G     110           -
LGA    G     110      R     111           -
LGA    R     111      D     112           -
LGA    D     112      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  112  112    5.0     64    3.17    68.75     38.089     1.956

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.736917 * X  +   0.437895 * Y  +  -0.514977 * Z  +  21.573858
  Y_new =  -0.241626 * X  +   0.882122 * Y  +   0.404325 * Z  +  27.970188
  Z_new =   0.631324 * X  +  -0.173522 * Y  +   0.755857 * Z  +   4.949683 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.225660    2.915933  [ DEG:   -12.9293    167.0706 ]
  Theta =  -0.683260   -2.458333  [ DEG:   -39.1479   -140.8521 ]
  Phi   =  -0.316841    2.824751  [ DEG:   -18.1537    161.8463 ]
 
# END of job
REMARK  ----------------------------------------------------------
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0283TS599_4                                  
REMARK     2: T0283                                         
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0283TS599_4.T0283 -4 -ie -d:5 -o1 -sia 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  112  112   5.0   64   3.17   68.75  38.089
REMARK  ---------------------------------------------------------- 
MOLECULE T0283TS599_4
PFRMAT TS                                                                       
TARGET T0283                                                                    
MODEL  4                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      23.773  19.075  27.958  1.00  0.00              
ATOM      2  CA  SER     2      26.809  20.978  27.676  1.00  0.00              
ATOM      3  CA  PHE     3      29.210  23.616  27.286  1.00  0.00              
ATOM      4  CA  ILE     4      26.253  21.083  26.192  1.00  0.00              
ATOM      5  CA  GLU     5      24.644  23.843  24.133  1.00  0.00              
ATOM      6  CA  LYS     6      27.953  24.566  22.501  1.00  0.00              
ATOM      7  CA  MET     7      28.519  20.899  21.692  1.00  0.00              
ATOM      8  CA  ILE     8      25.026  20.451  20.169  1.00  0.00              
ATOM      9  CA  GLY     9      25.450  23.492  18.012  1.00  0.00              
ATOM     10  CA  SER    10      28.791  22.379  16.701  1.00  0.00              
ATOM     11  CA  LEU    11      27.607  18.875  15.882  1.00  0.00              
ATOM     12  CA  ASN    12      24.390  19.584  14.077  1.00  0.00              
ATOM     13  CA  ASP    13      25.924  22.307  11.973  1.00  0.00              
ATOM     14  CA  LYS    14      28.778  20.016  10.985  1.00  0.00              
ATOM     15  CA  ARG    15      26.477  17.157   9.995  1.00  0.00              
ATOM     16  CA  GLU    16      24.266  19.435   7.848  1.00  0.00              
ATOM     17  CA  TRP    17      27.297  20.863   6.126  1.00  0.00              
ATOM     18  CA  LYS    18      28.565  17.323   5.437  1.00  0.00              
ATOM     19  CA  ALA    19      25.221  16.348   3.901  1.00  0.00              
ATOM     20  CA  MET    20      25.207  19.441   1.658  1.00  0.00              
ATOM     21  CA  GLU    21      28.764  18.590   0.557  1.00  0.00              
ATOM     22  CA  ALA    22      27.826  15.005  -0.233  1.00  0.00              
ATOM     23  CA  ARG    23      24.915  16.182  -2.376  1.00  0.00              
ATOM     24  CA  ALA    24      27.265  18.597  -4.118  1.00  0.00              
ATOM     25  CA  LYS    25      29.921  16.020  -4.840  1.00  0.00              
ATOM     26  CA  ALA    26      27.273  13.838  -6.554  1.00  0.00              
ATOM     27  CA  LEU    27      25.915  16.586  -8.705  1.00  0.00              
ATOM     28  CA  PRO    28      26.957  17.782 -12.029  1.00  0.00              
ATOM     29  CA  LYS    29      28.795  21.058 -11.979  1.00  0.00              
ATOM     30  CA  GLU    30      25.839  23.042 -13.370  1.00  0.00              
ATOM     31  CA  TYR    31      23.700  21.967 -10.417  1.00  0.00              
ATOM     32  CA  HIS    32      26.427  22.667  -7.826  1.00  0.00              
ATOM     33  CA  HIS    33      26.777  26.330  -8.878  1.00  0.00              
ATOM     34  CA  ALA    34      23.015  26.811  -8.708  1.00  0.00              
ATOM     35  CA  TYR    35      22.913  25.196  -5.212  1.00  0.00              
ATOM     36  CA  LYS    36      25.692  27.446  -3.990  1.00  0.00              
ATOM     37  CA  ALA    37      23.837  30.557  -5.284  1.00  0.00              
ATOM     38  CA  ILE    38      20.587  29.438  -3.565  1.00  0.00              
ATOM     39  CA  GLN    39      22.478  28.833  -0.296  1.00  0.00              
ATOM     40  CA  LYS    40      24.112  32.283  -0.533  1.00  0.00              
ATOM     41  CA  TYR    41      20.711  33.918  -1.212  1.00  0.00              
ATOM     42  CA  MET    42      19.091  32.018   1.742  1.00  0.00              
ATOM     43  CA  TRP    43      21.686  32.582   4.413  1.00  0.00              
ATOM     44  CA  THR    44      20.175  31.383   7.609  1.00  0.00              
ATOM     45  CA  SER    45      22.142  32.054  10.825  1.00  0.00              
ATOM     46  CA  GLY    46      19.266  32.450  13.252  1.00  0.00              
ATOM     47  CA  GLY    47      16.891  29.796  12.064  1.00  0.00              
ATOM     48  CA  PRO    48      18.007  26.206  11.386  1.00  0.00              
ATOM     49  CA  THR    49      18.048  24.838  14.882  1.00  0.00              
ATOM     50  CA  ASP    50      16.918  21.287  14.487  1.00  0.00              
ATOM     51  CA  TRP    51      18.969  20.194  11.436  1.00  0.00              
ATOM     52  CA  GLN    52      16.032  18.487   9.845  1.00  0.00              
ATOM     53  CA  ASP    53      13.970  21.686   9.796  1.00  0.00              
ATOM     54  CA  THR    54      16.804  23.738   8.207  1.00  0.00              
ATOM     55  CA  LYS    55      17.570  21.141   5.587  1.00  0.00              
ATOM     56  CA  ARG    56      13.907  20.744   4.535  1.00  0.00              
ATOM     57  CA  ILE    57      13.682  24.486   3.981  1.00  0.00              
ATOM     58  CA  PHE    58      16.871  24.555   1.887  1.00  0.00              
ATOM     59  CA  GLY    59      15.702  21.624  -0.144  1.00  0.00              
ATOM     60  CA  GLY    60      12.393  23.378  -0.979  1.00  0.00              
ATOM     61  CA  ILE    61      14.359  26.493  -2.037  1.00  0.00              
ATOM     62  CA  LEU    62      16.606  24.296  -4.215  1.00  0.00              
ATOM     63  CA  ASP    63      13.557  22.692  -5.833  1.00  0.00              
ATOM     64  CA  LEU    64      12.366  26.162  -6.854  1.00  0.00              
ATOM     65  CA  PHE    65      15.725  26.851  -8.339  1.00  0.00              
ATOM     66  CA  GLU    66      15.629  23.573 -10.341  1.00  0.00              
ATOM     67  CA  GLU    67      12.245  24.568 -11.754  1.00  0.00              
ATOM     68  CA  GLY    68      13.540  28.047 -12.685  1.00  0.00              
ATOM     69  CA  ALA    69      16.617  26.511 -14.422  1.00  0.00              
ATOM     70  CA  ALA    70      14.213  24.331 -16.382  1.00  0.00              
ATOM     71  CA  GLU    71      12.128  27.363 -17.480  1.00  0.00              
ATOM     72  CA  GLY    72      15.202  29.328 -18.548  1.00  0.00              
ATOM     73  CA  LYS    73      14.941  32.135 -16.103  1.00  0.00              
ATOM     74  CA  LYS    74      17.374  33.114 -13.408  1.00  0.00              
ATOM     75  CA  VAL    75      16.077  32.561  -9.792  1.00  0.00              
ATOM     76  CA  THR    76      16.014  36.275  -9.017  1.00  0.00              
ATOM     77  CA  ASP    77      14.114  36.942 -12.295  1.00  0.00              
ATOM     78  CA  LEU    78      11.551  34.179 -11.693  1.00  0.00              
ATOM     79  CA  THR    79      10.719  35.318  -8.194  1.00  0.00              
ATOM     80  CA  GLY    80      10.628  38.997  -9.117  1.00  0.00              
ATOM     81  CA  GLU    81      11.919  41.838  -7.035  1.00  0.00              
ATOM     82  CA  ASP    82      10.002  41.596  -3.728  1.00  0.00              
ATOM     83  CA  VAL    83      11.373  38.069  -3.081  1.00  0.00              
ATOM     84  CA  ALA    84      14.921  39.228  -3.861  1.00  0.00              
ATOM     85  CA  ALA    85      14.695  42.148  -1.414  1.00  0.00              
ATOM     86  CA  PHE    86      13.411  39.757   1.257  1.00  0.00              
ATOM     87  CA  CYS    87      16.304  37.330   0.602  1.00  0.00              
ATOM     88  CA  ASP    88      18.849  40.163   0.905  1.00  0.00              
ATOM     89  CA  GLU    89      17.261  41.293   4.216  1.00  0.00              
ATOM     90  CA  LEU    90      17.255  37.830   5.680  1.00  0.00              
ATOM     91  CA  MET    91      20.866  37.231   4.816  1.00  0.00              
ATOM     92  CA  LYS    92      22.058  40.509   6.364  1.00  0.00              
ATOM     93  CA  ASP    93      20.116  39.855   9.586  1.00  0.00              
ATOM     94  CA  THR    94      21.439  36.354   9.981  1.00  0.00              
ATOM     95  CA  LYS    95      25.106  37.336  10.207  1.00  0.00              
ATOM     96  CA  THR    96      24.497  39.839  13.048  1.00  0.00              
ATOM     97  CA  TRP    97      22.493  37.304  15.002  1.00  0.00              
ATOM     98  CA  MET    98      25.245  34.648  14.545  1.00  0.00              
ATOM     99  CA  ASP    99      27.881  37.078  15.896  1.00  0.00              
ATOM    100  CA  LYS   100      25.589  37.800  18.896  1.00  0.00              
ATOM    101  CA  TYR   101      25.091  34.088  19.567  1.00  0.00              
ATOM    102  CA  ARG   102      28.841  33.444  19.386  1.00  0.00              
ATOM    103  CA  THR   103      29.339  36.177  21.977  1.00  0.00              
ATOM    104  CA  LYS   104      26.650  34.812  24.281  1.00  0.00              
ATOM    105  CA  LEU   105      28.147  31.274  24.121  1.00  0.00              
ATOM    106  CA  ASN   106      31.639  32.630  24.766  1.00  0.00              
ATOM    107  CA  ASP   107      30.390  34.488  27.791  1.00  0.00              
ATOM    108  CA  SER   108      28.644  31.394  29.241  1.00  0.00              
ATOM    109  CA  ILE   109      31.737  29.314  28.691  1.00  0.00              
ATOM    110  CA  GLY   110      34.080  32.131  30.510  1.00  0.00              
ATOM    111  CA  ARG   111      31.835  31.628  33.276  1.00  0.00              
ATOM    112  CA  ASP   112      33.000  27.823  31.932  1.00  0.00              
TER                                                                             
END
