
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  112 (  112),  selected  112 , name T0283TS599_5
# Molecule2: number of CA atoms  112 (  888),  selected  112 , name T0283
# PARAMETERS: T0283TS599_5.T0283  -4  -ie  -d:5  -o1  -sia  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1          2.149
LGA    S       2      S       2          2.648
LGA    F       3      -       -           -
LGA    I       4      -       -           -
LGA    E       5      F       3           #
LGA    K       6      I       4           -
LGA    -       -      E       5           -
LGA    M       7      K       6          2.911
LGA    I       8      M       7          4.984
LGA    G       9      I       8           -
LGA    S      10      -       -           -
LGA    L      11      G       9          3.829
LGA    N      12      S      10          2.845
LGA    D      13      -       -           -
LGA    K      14      L      11           #
LGA    R      15      N      12          3.925
LGA    E      16      D      13          2.293
LGA    W      17      K      14          3.625
LGA    K      18      R      15          4.783
LGA    A      19      E      16          3.819
LGA    M      20      W      17          2.356
LGA    E      21      K      18          3.742
LGA    A      22      A      19           #
LGA    R      23      M      20          4.476
LGA    -       -      E      21           -
LGA    -       -      A      22           -
LGA    -       -      R      23           -
LGA    A      24      A      24          4.729
LGA    K      25      -       -           -
LGA    A      26      K      25          4.910
LGA    L      27      A      26          2.790
LGA    P      28      L      27          4.462
LGA    -       -      P      28           -
LGA    K      29      K      29          2.948
LGA    E      30      E      30          3.700
LGA    Y      31      Y      31          3.753
LGA    H      32      H      32          1.774
LGA    H      33      H      33          1.330
LGA    A      34      A      34          2.886
LGA    Y      35      Y      35          1.586
LGA    K      36      K      36          1.478
LGA    A      37      A      37          3.312
LGA    I      38      I      38          3.138
LGA    Q      39      Q      39          1.963
LGA    K      40      K      40          3.816
LGA    Y      41      Y      41          4.649
LGA    M      42      M      42          3.259
LGA    W      43      W      43          4.166
LGA    T      44      T      44          4.662
LGA    S      45      S      45          2.452
LGA    G      46      G      46           -
LGA    G      47      G      47           #
LGA    P      48      P      48          3.279
LGA    T      49      T      49          3.094
LGA    D      50      D      50          2.071
LGA    W      51      W      51          1.621
LGA    Q      52      Q      52          2.328
LGA    D      53      D      53          2.101
LGA    T      54      T      54          1.316
LGA    K      55      K      55          1.327
LGA    R      56      R      56          1.981
LGA    I      57      I      57          1.600
LGA    F      58      F      58          1.244
LGA    G      59      G      59          1.405
LGA    G      60      G      60          1.242
LGA    I      61      I      61          1.074
LGA    L      62      L      62          1.080
LGA    D      63      D      63          1.149
LGA    L      64      L      64          0.960
LGA    F      65      F      65          1.238
LGA    E      66      E      66          1.682
LGA    E      67      E      67          1.794
LGA    G      68      G      68          1.704
LGA    A      69      A      69          2.002
LGA    A      70      A      70          3.044
LGA    E      71      E      71          3.167
LGA    G      72      G      72          3.057
LGA    K      73      K      73          1.615
LGA    K      74      K      74          0.960
LGA    V      75      V      75          1.430
LGA    T      76      T      76          3.186
LGA    D      77      D      77          3.093
LGA    L      78      L      78          1.566
LGA    T      79      T      79          1.432
LGA    G      80      G      80          2.322
LGA    -       -      E      81           -
LGA    E      81      D      82          2.281
LGA    D      82      V      83           #
LGA    -       -      A      84           -
LGA    -       -      A      85           -
LGA    V      83      F      86          0.261
LGA    A      84      C      87          4.401
LGA    A      85      D      88          4.418
LGA    F      86      E      89          3.625
LGA    C      87      L      90           #
LGA    D      88      -       -           -
LGA    E      89      -       -           -
LGA    L      90      M      91           #
LGA    M      91      K      92           -
LGA    K      92      D      93           -
LGA    -       -      T      94           -
LGA    -       -      K      95           -
LGA    D      93      T      96          5.308
LGA    T      94      W      97          2.909
LGA    K      95      M      98          1.738
LGA    T      96      D      99          4.154
LGA    W      97      K     100          1.954
LGA    M      98      Y     101          2.026
LGA    D      99      R     102          4.357
LGA    K     100      T     103          2.361
LGA    Y     101      K     104          2.701
LGA    R     102      L     105           #
LGA    T     103      N     106           #
LGA    K     104      D     107          3.920
LGA    L     105      S     108           #
LGA    N     106      I     109           #
LGA    D     107      G     110           #
LGA    S     108      R     111           -
LGA    I     109      D     112           -
LGA    G     110      -       -           -
LGA    R     111      -       -           -
LGA    D     112      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  112  112    5.0     83    2.96    63.86     48.062     2.711

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.645297 * X  +   0.722767 * Y  +   0.247386 * Z  +  22.084406
  Y_new =   0.284206 * X  +   0.073454 * Y  +  -0.955945 * Z  +  27.071220
  Z_new =  -0.709097 * X  +   0.687177 * Y  +  -0.158015 * Z  +   5.027256 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.796815   -1.344777  [ DEG:   102.9499    -77.0501 ]
  Theta =   0.788217    2.353375  [ DEG:    45.1615    134.8385 ]
  Phi   =   0.414864   -2.726728  [ DEG:    23.7700   -156.2300 ]
 
# END of job
REMARK  ----------------------------------------------------------
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0283TS599_5                                  
REMARK     2: T0283                                         
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0283TS599_5.T0283 -4 -ie -d:5 -o1 -sia 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  112  112   5.0   83   2.96   63.86  48.062
REMARK  ---------------------------------------------------------- 
MOLECULE T0283TS599_5
PFRMAT TS                                                                       
TARGET T0283                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      25.631   7.383  23.414  1.00  0.00              
ATOM      2  CA  SER     2      27.355  10.470  24.071  1.00  0.00              
ATOM      3  CA  PHE     3      28.148  13.887  24.840  1.00  0.00              
ATOM      4  CA  ILE     4      26.623  10.661  22.710  1.00  0.00              
ATOM      5  CA  GLU     5      23.931  12.991  21.347  1.00  0.00              
ATOM      6  CA  LYS     6      26.551  15.588  20.380  1.00  0.00              
ATOM      7  CA  MET     7      28.705  13.046  18.561  1.00  0.00              
ATOM      8  CA  ILE     8      25.655  11.725  16.682  1.00  0.00              
ATOM      9  CA  GLY     9      24.666  15.300  15.698  1.00  0.00              
ATOM     10  CA  SER    10      28.171  16.094  14.339  1.00  0.00              
ATOM     11  CA  LEU    11      28.142  12.856  12.286  1.00  0.00              
ATOM     12  CA  ASN    12      24.686  13.572  10.841  1.00  0.00              
ATOM     13  CA  ASP    13      25.754  17.088   9.837  1.00  0.00              
ATOM     14  CA  LYS    14      28.920  15.764   8.136  1.00  0.00              
ATOM     15  CA  ARG    15      26.953  13.092   6.187  1.00  0.00              
ATOM     16  CA  GLU    16      24.314  15.583   5.021  1.00  0.00              
ATOM     17  CA  TRP    17      27.019  18.033   3.846  1.00  0.00              
ATOM     18  CA  LYS    18      28.733  15.196   1.957  1.00  0.00              
ATOM     19  CA  ALA    19      25.392  14.300   0.285  1.00  0.00              
ATOM     20  CA  MET    20      24.816  17.912  -0.730  1.00  0.00              
ATOM     21  CA  GLU    21      28.374  18.092  -2.188  1.00  0.00              
ATOM     22  CA  ALA    22      27.785  14.890  -4.163  1.00  0.00              
ATOM     23  CA  ARG    23      24.475  16.243  -5.504  1.00  0.00              
ATOM     24  CA  ALA    24      26.220  19.516  -6.435  1.00  0.00              
ATOM     25  CA  LYS    25      29.077  17.878  -8.250  1.00  0.00              
ATOM     26  CA  ALA    26      26.700  15.761 -10.334  1.00  0.00              
ATOM     27  CA  LEU    27      24.480  18.645 -11.215  1.00  0.00              
ATOM     28  CA  PRO    28      24.567  20.745 -14.176  1.00  0.00              
ATOM     29  CA  LYS    29      26.143  24.131 -14.136  1.00  0.00              
ATOM     30  CA  GLU    30      22.849  26.088 -14.263  1.00  0.00              
ATOM     31  CA  TYR    31      21.814  24.410 -11.036  1.00  0.00              
ATOM     32  CA  HIS    32      25.191  24.984  -9.407  1.00  0.00              
ATOM     33  CA  HIS    33      25.023  28.722  -9.889  1.00  0.00              
ATOM     34  CA  ALA    34      21.556  28.832  -8.360  1.00  0.00              
ATOM     35  CA  TYR    35      22.679  26.815  -5.352  1.00  0.00              
ATOM     36  CA  LYS    36      25.619  29.109  -4.751  1.00  0.00              
ATOM     37  CA  ALA    37      23.318  32.172  -4.695  1.00  0.00              
ATOM     38  CA  ILE    38      21.011  30.383  -2.241  1.00  0.00              
ATOM     39  CA  GLN    39      23.882  29.430   0.092  1.00  0.00              
ATOM     40  CA  LYS    40      25.114  33.044   0.066  1.00  0.00              
ATOM     41  CA  TYR    41      21.582  34.194   0.875  1.00  0.00              
ATOM     42  CA  MET    42      21.368  31.920   3.910  1.00  0.00              
ATOM     43  CA  TRP    43      24.568  32.975   5.678  1.00  0.00              
ATOM     44  CA  THR    44      25.196  31.374   9.017  1.00  0.00              
ATOM     45  CA  SER    45      27.001  33.672  11.485  1.00  0.00              
ATOM     46  CA  GLY    46      27.763  31.099  14.163  1.00  0.00              
ATOM     47  CA  GLY    47      24.381  29.496  14.503  1.00  0.00              
ATOM     48  CA  PRO    48      21.784  28.034  12.252  1.00  0.00              
ATOM     49  CA  THR    49      23.457  25.050  10.754  1.00  0.00              
ATOM     50  CA  ASP    50      21.235  22.203  12.030  1.00  0.00              
ATOM     51  CA  TRP    51      21.589  19.670   9.192  1.00  0.00              
ATOM     52  CA  GLN    52      17.858  18.907   8.933  1.00  0.00              
ATOM     53  CA  ASP    53      16.880  22.584   8.757  1.00  0.00              
ATOM     54  CA  THR    54      19.517  23.377   6.098  1.00  0.00              
ATOM     55  CA  LYS    55      18.495  20.476   3.854  1.00  0.00              
ATOM     56  CA  ARG    56      14.798  21.378   3.971  1.00  0.00              
ATOM     57  CA  ILE    57      15.587  25.011   3.086  1.00  0.00              
ATOM     58  CA  PHE    58      17.849  24.016   0.205  1.00  0.00              
ATOM     59  CA  GLY    59      15.296  21.614  -1.128  1.00  0.00              
ATOM     60  CA  GLY    60      12.553  24.266  -1.104  1.00  0.00              
ATOM     61  CA  ILE    61      14.841  26.736  -2.902  1.00  0.00              
ATOM     62  CA  LEU    62      15.717  24.072  -5.513  1.00  0.00              
ATOM     63  CA  ASP    63      12.035  23.288  -6.091  1.00  0.00              
ATOM     64  CA  LEU    64      11.412  27.002  -6.750  1.00  0.00              
ATOM     65  CA  PHE    65      14.304  27.069  -9.187  1.00  0.00              
ATOM     66  CA  GLU    66      12.958  23.950 -11.012  1.00  0.00              
ATOM     67  CA  GLU    67       9.571  25.672 -11.363  1.00  0.00              
ATOM     68  CA  GLY    68      11.239  28.839 -12.703  1.00  0.00              
ATOM     69  CA  ALA    69      13.191  26.675 -15.224  1.00  0.00              
ATOM     70  CA  ALA    70       9.817  25.216 -16.314  1.00  0.00              
ATOM     71  CA  GLU    71       8.311  28.706 -16.716  1.00  0.00              
ATOM     72  CA  GLY    72      11.185  30.000 -18.750  1.00  0.00              
ATOM     73  CA  LYS    73      12.773  32.301 -16.240  1.00  0.00              
ATOM     74  CA  LYS    74      16.506  32.149 -15.563  1.00  0.00              
ATOM     75  CA  VAL    75      17.471  31.222 -12.029  1.00  0.00              
ATOM     76  CA  THR    76      18.972  34.580 -11.105  1.00  0.00              
ATOM     77  CA  ASP    77      15.766  36.253 -12.427  1.00  0.00              
ATOM     78  CA  LEU    78      13.475  34.077 -10.346  1.00  0.00              
ATOM     79  CA  THR    79      15.421  34.696  -7.122  1.00  0.00              
ATOM     80  CA  GLY    80      16.188  38.365  -7.415  1.00  0.00              
ATOM     81  CA  GLU    81      15.666  41.074  -4.885  1.00  0.00              
ATOM     82  CA  ASP    82      13.044  39.822  -2.401  1.00  0.00              
ATOM     83  CA  VAL    83      15.169  36.765  -1.592  1.00  0.00              
ATOM     84  CA  ALA    84      18.250  38.943  -1.247  1.00  0.00              
ATOM     85  CA  ALA    85      16.631  41.236   1.304  1.00  0.00              
ATOM     86  CA  PHE    86      15.522  38.180   3.310  1.00  0.00              
ATOM     87  CA  CYS    87      19.051  36.736   3.224  1.00  0.00              
ATOM     88  CA  ASP    88      20.566  40.042   4.416  1.00  0.00              
ATOM     89  CA  GLU    89      18.044  40.059   7.278  1.00  0.00              
ATOM     90  CA  LEU    90      18.841  36.483   8.289  1.00  0.00              
ATOM     91  CA  MET    91      22.612  37.080   8.283  1.00  0.00              
ATOM     92  CA  LYS    92      22.235  40.149  10.454  1.00  0.00              
ATOM     93  CA  ASP    93      19.984  38.265  12.922  1.00  0.00              
ATOM     94  CA  THR    94      22.420  35.350  13.237  1.00  0.00              
ATOM     95  CA  LYS    95      25.298  37.658  14.261  1.00  0.00              
ATOM     96  CA  THR    96      23.320  39.178  17.144  1.00  0.00              
ATOM     97  CA  TRP    97      22.399  35.681  18.443  1.00  0.00              
ATOM     98  CA  MET    98      26.003  34.473  18.236  1.00  0.00              
ATOM     99  CA  ASP    99      27.227  37.515  20.187  1.00  0.00              
ATOM    100  CA  LYS   100      24.542  36.991  22.832  1.00  0.00              
ATOM    101  CA  TYR   101      25.527  33.322  23.174  1.00  0.00              
ATOM    102  CA  ARG   102      29.235  34.198  23.496  1.00  0.00              
ATOM    103  CA  THR   103      28.419  36.734  26.181  1.00  0.00              
ATOM    104  CA  LYS   104      26.285  34.171  28.089  1.00  0.00              
ATOM    105  CA  LEU   105      29.129  31.625  27.892  1.00  0.00              
ATOM    106  CA  ASN   106      31.667  34.211  29.099  1.00  0.00              
ATOM    107  CA  ASP   107      29.431  35.054  32.010  1.00  0.00              
ATOM    108  CA  SER   108      29.059  31.349  32.942  1.00  0.00              
ATOM    109  CA  ILE   109      32.831  30.886  32.746  1.00  0.00              
ATOM    110  CA  GLY   110      33.463  34.145  35.104  1.00  0.00              
ATOM    111  CA  ARG   111      31.382  32.350  37.422  1.00  0.00              
ATOM    112  CA  ASP   112      34.247  29.640  35.977  1.00  0.00              
TER                                                                             
END
