
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   93 (   93),  selected   93 , name T0288TS168_4
# Molecule2: number of CA atoms   91 (  667),  selected   91 , name T0288
# PARAMETERS: T0288TS168_4.T0288  -4  -ie  -d:5  -o1  -sia  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    S       1      S       1           -
LGA    M       2      M       2           -
LGA    V       3      V       3          5.562
LGA    P       4      P       4          1.738
LGA    G       5      G       5          1.904
LGA    K       6      K       6          2.855
LGA    V       7      V       7          2.389
LGA    T       8      T       8          1.311
LGA    L       9      L       9          0.682
LGA    Q      10      Q      10          1.279
LGA    K      11      K      11          1.281
LGA    D      12      D      12          1.283
LGA    A      13      A      13          2.688
LGA    Q      14      Q      14          2.309
LGA    N      15      N      15          2.211
LGA    L      16      L      16          1.956
LGA    I      17      I      17          2.242
LGA    G      18      G      18          1.281
LGA    I      19      I      19          1.645
LGA    S      20      S      20          0.654
LGA    I      21      I      21          2.307
LGA    G      22      G      22          1.644
LGA    G      23      G      23          1.665
LGA    G      24      G      24          1.636
LGA    A      25      A      25          3.329
LGA    Q      26      Q      26          2.573
LGA    Y      27      P      29          2.899
LGA    C      28      -       -           -
LGA    P      29      -       -           -
LGA    C      30      C      30          1.954
LGA    L      31      L      31          1.547
LGA    Y      32      Y      32          2.762
LGA    I      33      I      33          1.431
LGA    V      34      V      34          1.136
LGA    Q      35      Q      35          0.071
LGA    V      36      V      36          1.225
LGA    F      37      F      37          1.010
LGA    D      38      D      38          1.394
LGA    N      39      N      39          1.272
LGA    T      40      T      40          1.149
LGA    P      41      P      41          1.879
LGA    A      42      A      42          1.151
LGA    A      43      A      43          1.056
LGA    L      44      L      44          2.067
LGA    D      45      D      45          0.293
LGA    G      46      G      46          0.951
LGA    T      47      T      47          0.534
LGA    V      48      V      48          1.094
LGA    A      49      A      49          1.942
LGA    A      50      A      50          1.861
LGA    G      51      G      51          1.441
LGA    D      52      D      52          1.304
LGA    E      53      E      53          1.348
LGA    I      54      I      54          0.999
LGA    T      55      T      55          1.817
LGA    G      56      G      56          1.956
LGA    V      57      V      57          1.876
LGA    N      58      N      58          0.931
LGA    G      59      G      59          1.871
LGA    R      60      R      60          1.759
LGA    S      61      S      61          1.617
LGA    I      62      I      62          1.491
LGA    K      63      K      63          2.662
LGA    G      64      G      64          2.919
LGA    K      65      K      65          2.865
LGA    T      66      T      66          1.873
LGA    K      67      K      67          1.130
LGA    V      68      V      68          0.752
LGA    E      69      E      69          0.207
LGA    V      70      V      70          1.049
LGA    A      71      A      71          0.439
LGA    K      72      K      72          0.745
LGA    M      73      M      73          1.446
LGA    I      74      I      74          1.494
LGA    Q      75      Q      75          1.017
LGA    E      76      E      76          2.595
LGA    V      77      V      77          2.365
LGA    K      78      K      78          1.568
LGA    G      79      G      79          3.773
LGA    E      80      E      80          1.229
LGA    V      81      V      81          0.965
LGA    T      82      T      82          0.641
LGA    I      83      I      83          1.361
LGA    H      84      H      84          1.540
LGA    Y      85      Y      85          1.112
LGA    N      86      N      86          0.730
LGA    K      87      K      87          0.842
LGA    L      88      L      88          2.996
LGA    Q      89      Q      89          2.632
LGA    Y      90      Y      90          3.044
LGA    Y      91      Y      91          4.528
LGA    K      92      K      92          7.751
LGA    V      93      V      93           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   93   91    5.0     88    2.09    98.86     84.868     4.020

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.537317 * X  +  -0.821341 * Y  +   0.191545 * Z  +  27.635166
  Y_new =  -0.795801 * X  +  -0.568960 * Y  +  -0.207331 * Z  +  17.629082
  Z_new =   0.279270 * X  +  -0.041029 * Y  +  -0.959336 * Z  +  13.161509 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -3.098850    0.042743  [ DEG:  -177.5510      2.4490 ]
  Theta =  -0.283034   -2.858558  [ DEG:   -16.2167   -163.7833 ]
  Phi   =  -0.976916    2.164676  [ DEG:   -55.9732    124.0268 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0288TS168_4                                  
REMARK     2: T0288                                         
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0288TS168_4.T0288 -4 -ie -d:5 -o1 -sia 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   93   91   5.0   88   2.09   98.86  84.868
REMARK  ---------------------------------------------------------- 
MOLECULE T0288TS168_4
PFRMAT TS
TARGET T0288
MODEL 4
PARENT N/A
ATOM      1  CA  SER     1      27.348  12.957  34.074  1.00 25.00           C
ATOM      2  CA  MET     2      27.342  11.368  30.643  1.00 25.00           C
ATOM      3  CA  VAL     3      27.102  12.184  26.941  1.00 25.00           C
ATOM      4  CA  PRO     4      24.663  14.762  25.472  1.00 25.00           C
ATOM      5  CA  GLY     5      23.391  17.431  23.058  1.00 25.00           C
ATOM      6  CA  LYS     6      21.100  19.551  20.888  1.00 25.00           C
ATOM      7  CA  VAL     7      21.633  22.115  18.195  1.00 25.00           C
ATOM      8  CA  THR     8      18.397  21.712  16.309  1.00 25.00           C
ATOM      9  CA  LEU     9      19.450  24.177  13.607  1.00 25.00           C
ATOM     10  CA  GLN    10      17.091  26.367  11.578  1.00 25.00           C
ATOM     11  CA  LYS    11      18.583  26.253   8.133  1.00 25.00           C
ATOM     12  CA  ASP    12      18.961  29.659   6.387  1.00 25.00           C
ATOM     13  CA  ALA    13      16.847  29.337   3.210  1.00 25.00           C
ATOM     14  CA  GLN    14      20.194  28.111   1.763  1.00 25.00           C
ATOM     15  CA  ASN    15      23.128  25.876   2.574  1.00 25.00           C
ATOM     16  CA  LEU    16      23.573  23.302   5.414  1.00 25.00           C
ATOM     17  CA  ILE    17      25.171  22.991   8.887  1.00 25.00           C
ATOM     18  CA  GLY    18      27.338  25.814   7.711  1.00 25.00           C
ATOM     19  CA  ILE    19      30.481  23.798   8.636  1.00 25.00           C
ATOM     20  CA  SER    20      32.314  20.534   7.969  1.00 25.00           C
ATOM     21  CA  ILE    21      33.348  17.131   6.617  1.00 25.00           C
ATOM     22  CA  GLY    22      36.788  16.500   7.959  1.00 25.00           C
ATOM     23  CA  GLY    23      36.599  12.800   8.738  1.00 25.00           C
ATOM     24  CA  GLY    24      36.535   9.220  10.099  1.00 25.00           C
ATOM     25  CA  ALA    25      38.027   7.317   7.140  1.00 25.00           C
ATOM     26  CA  GLN    26      40.018   5.258   9.730  1.00 25.00           C
ATOM     27  CA  TYR    27      36.764   3.311  10.124  1.00 25.00           C
ATOM     28  CA  CYS    28      36.772   3.593  13.920  1.00 25.00           C
ATOM     29  CA  PRO    29      35.859   7.174  14.725  1.00 25.00           C
ATOM     30  CA  CYS    30      32.674   9.266  14.476  1.00 25.00           C
ATOM     31  CA  LEU    31      31.738  11.331  11.439  1.00 25.00           C
ATOM     32  CA  TYR    32      32.721  15.011  11.132  1.00 25.00           C
ATOM     33  CA  ILE    33      33.880  18.488  12.316  1.00 25.00           C
ATOM     34  CA  VAL    34      36.740  20.757  11.128  1.00 25.00           C
ATOM     35  CA  GLN    35      34.810  23.983  11.769  1.00 25.00           C
ATOM     36  CA  VAL    36      32.420  26.944  12.306  1.00 25.00           C
ATOM     37  CA  PHE    37      31.740  29.574   9.643  1.00 25.00           C
ATOM     38  CA  ASP    38      30.665  33.192  10.172  1.00 25.00           C
ATOM     39  CA  ASN    39      27.069  33.960   9.319  1.00 25.00           C
ATOM     40  CA  THR    40      25.615  30.498   9.073  1.00 25.00           C
ATOM     41  CA  PRO    41      23.339  27.852  10.552  1.00 25.00           C
ATOM     42  CA  ALA    42      25.742  26.153  12.908  1.00 25.00           C
ATOM     43  CA  ALA    43      26.495  29.648  14.320  1.00 25.00           C
ATOM     44  CA  LEU    44      22.777  30.349  14.966  1.00 25.00           C
ATOM     45  CA  ASP    45      23.215  28.435  18.223  1.00 25.00           C
ATOM     46  CA  GLY    46      26.897  28.191  19.254  1.00 25.00           C
ATOM     47  CA  THR    47      26.196  24.677  20.554  1.00 25.00           C
ATOM     48  CA  VAL    48      28.186  23.255  17.678  1.00 25.00           C
ATOM     49  CA  ALA    49      31.159  23.108  20.125  1.00 25.00           C
ATOM     50  CA  ALA    50      33.802  23.051  17.398  1.00 25.00           C
ATOM     51  CA  GLY    51      35.450  19.642  16.996  1.00 25.00           C
ATOM     52  CA  ASP    52      31.952  18.266  17.853  1.00 25.00           C
ATOM     53  CA  GLU    53      32.178  14.709  16.505  1.00 25.00           C
ATOM     54  CA  ILE    54      28.879  14.278  14.695  1.00 25.00           C
ATOM     55  CA  THR    55      26.315  11.494  14.873  1.00 25.00           C
ATOM     56  CA  GLY    56      23.050  12.070  13.032  1.00 25.00           C
ATOM     57  CA  VAL    57      19.951  12.283  10.876  1.00 25.00           C
ATOM     58  CA  ASN    58      16.722  13.117  12.725  1.00 25.00           C
ATOM     59  CA  GLY    59      17.008   9.419  13.431  1.00 25.00           C
ATOM     60  CA  ARG    60      19.424   7.227  11.382  1.00 25.00           C
ATOM     61  CA  SER    61      23.072   6.791  12.319  1.00 25.00           C
ATOM     62  CA  ILE    62      26.245   8.122  10.610  1.00 25.00           C
ATOM     63  CA  LYS    63      28.152   6.423  13.483  1.00 25.00           C
ATOM     64  CA  GLY    64      29.848   3.513  11.788  1.00 25.00           C
ATOM     65  CA  LYS    65      30.706   5.321   8.520  1.00 25.00           C
ATOM     66  CA  THR    66      32.838   7.210   6.049  1.00 25.00           C
ATOM     67  CA  LYS    67      32.569  10.806   4.894  1.00 25.00           C
ATOM     68  CA  VAL    68      30.687  11.585   1.650  1.00 25.00           C
ATOM     69  CA  GLU    69      27.638   9.649   2.925  1.00 25.00           C
ATOM     70  CA  VAL    70      27.757  11.587   6.227  1.00 25.00           C
ATOM     71  CA  ALA    71      27.942  14.895   4.305  1.00 25.00           C
ATOM     72  CA  LYS    72      24.936  13.853   2.173  1.00 25.00           C
ATOM     73  CA  MET    73      22.973  12.952   5.335  1.00 25.00           C
ATOM     74  CA  ILE    74      23.838  16.352   6.870  1.00 25.00           C
ATOM     75  CA  GLN    75      22.679  18.118   3.675  1.00 25.00           C
ATOM     76  CA  GLU    76      19.395  16.150   3.750  1.00 25.00           C
ATOM     77  CA  VAL    77      16.783  17.024   6.397  1.00 25.00           C
ATOM     78  CA  LYS    78      15.639  20.430   5.054  1.00 25.00           C
ATOM     79  CA  GLY    79      12.803  20.054   7.599  1.00 25.00           C
ATOM     80  CA  GLU    80      15.205  21.477  10.187  1.00 25.00           C
ATOM     81  CA  VAL    81      18.629  19.838  10.615  1.00 25.00           C
ATOM     82  CA  THR    82      19.526  17.465  13.526  1.00 25.00           C
ATOM     83  CA  ILE    83      22.397  16.739  15.939  1.00 25.00           C
ATOM     84  CA  HIS    84      23.062  14.492  18.959  1.00 25.00           C
ATOM     85  CA  TYR    85      26.481  16.154  18.824  1.00 25.00           C
ATOM     86  CA  ASN    86      28.837  14.441  21.269  1.00 25.00           C
ATOM     87  CA  LYS    87      31.448  16.568  22.973  1.00 25.00           C
ATOM     88  CA  LEU    88      35.038  16.870  21.898  1.00 25.00           C
ATOM     89  CA  GLN    89      38.206  17.221  24.061  1.00 25.00           C
ATOM     90  CA  TYR    90      40.228  15.765  26.879  1.00 25.00           C
ATOM     91  CA  TYR    91      43.427  15.574  28.919  1.00 25.00           C
ATOM     92  CA  LYS    92      45.957  17.281  31.215  1.00 25.00           C
ATOM     93  CA  VAL    93      44.425  17.567  34.692  1.00 25.00           C
TER
END
