
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   93 (   93),  selected   93 , name T0288TS168_5
# Molecule2: number of CA atoms   91 (  667),  selected   91 , name T0288
# PARAMETERS: T0288TS168_5.T0288  -4  -ie  -d:5  -o1  -sia  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    S       1      S       1           -
LGA    M       2      -       -           -
LGA    V       3      M       2           #
LGA    -       -      V       3           -
LGA    P       4      P       4          2.890
LGA    G       5      G       5          1.981
LGA    K       6      K       6          2.627
LGA    V       7      V       7          1.482
LGA    T       8      T       8          2.802
LGA    L       9      L       9          1.113
LGA    Q      10      Q      10          0.917
LGA    K      11      K      11          1.008
LGA    D      12      D      12          2.413
LGA    A      13      A      13          2.295
LGA    Q      14      Q      14          1.960
LGA    N      15      N      15          0.617
LGA    L      16      L      16          1.370
LGA    I      17      I      17          1.924
LGA    G      18      G      18          2.452
LGA    I      19      I      19          1.556
LGA    S      20      S      20          2.138
LGA    I      21      I      21          2.032
LGA    G      22      G      22          0.836
LGA    G      23      G      23          0.226
LGA    G      24      G      24          1.561
LGA    A      25      A      25          3.947
LGA    Q      26      Q      26          3.026
LGA    Y      27      -       -           -
LGA    C      28      -       -           -
LGA    P      29      P      29          1.668
LGA    C      30      C      30          1.273
LGA    L      31      L      31          1.460
LGA    Y      32      Y      32          2.874
LGA    I      33      I      33          1.570
LGA    V      34      V      34          1.096
LGA    Q      35      Q      35          0.819
LGA    V      36      V      36          0.384
LGA    F      37      F      37          0.889
LGA    D      38      D      38          1.277
LGA    N      39      N      39          1.074
LGA    T      40      T      40          0.803
LGA    P      41      P      41          2.472
LGA    A      42      A      42          2.202
LGA    A      43      A      43          1.240
LGA    L      44      L      44          0.968
LGA    D      45      D      45          0.889
LGA    G      46      G      46          0.776
LGA    T      47      T      47          1.536
LGA    V      48      V      48          0.704
LGA    A      49      A      49          1.038
LGA    A      50      A      50          1.495
LGA    G      51      G      51          1.522
LGA    D      52      D      52          1.879
LGA    E      53      E      53          1.040
LGA    I      54      I      54          0.982
LGA    T      55      T      55          2.282
LGA    G      56      G      56          1.434
LGA    V      57      V      57          2.261
LGA    N      58      N      58          1.286
LGA    G      59      G      59          1.517
LGA    R      60      R      60          1.368
LGA    S      61      S      61          1.265
LGA    I      62      I      62          1.076
LGA    K      63      K      63          2.289
LGA    G      64      G      64          2.248
LGA    K      65      K      65          1.565
LGA    T      66      T      66          0.984
LGA    K      67      K      67          0.693
LGA    V      68      V      68          0.523
LGA    E      69      E      69          0.594
LGA    V      70      V      70          0.804
LGA    A      71      A      71          0.405
LGA    K      72      K      72          0.428
LGA    M      73      M      73          0.701
LGA    I      74      I      74          0.673
LGA    Q      75      Q      75          0.507
LGA    E      76      E      76          1.265
LGA    V      77      V      77          1.008
LGA    K      78      K      78          0.720
LGA    G      79      G      79          1.846
LGA    E      80      E      80          2.177
LGA    V      81      V      81          0.659
LGA    T      82      T      82          0.153
LGA    I      83      I      83          0.367
LGA    H      84      H      84          1.199
LGA    Y      85      Y      85          0.967
LGA    N      86      N      86          1.028
LGA    K      87      K      87          1.755
LGA    L      88      L      88          1.481
LGA    Q      89      Q      89          1.598
LGA    Y      90      Y      90          1.763
LGA    Y      91      Y      91          4.580
LGA    K      92      K      92           -
LGA    V      93      V      93           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   93   91    5.0     86    1.66   100.00     86.119     4.897

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.234971 * X  +  -0.927639 * Y  +   0.290301 * Z  +  27.631470
  Y_new =  -0.862167 * X  +  -0.060994 * Y  +   0.502939 * Z  +  17.527761
  Z_new =  -0.448839 * X  +  -0.368463 * Y  +  -0.814112 * Z  +  13.230823 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.716582    0.425010  [ DEG:  -155.6487     24.3513 ]
  Theta =   0.465466    2.676127  [ DEG:    26.6692    153.3308 ]
  Phi   =  -1.304723    1.836869  [ DEG:   -74.7551    105.2449 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0288TS168_5                                  
REMARK     2: T0288                                         
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0288TS168_5.T0288 -4 -ie -d:5 -o1 -sia 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   93   91   5.0   86   1.66  100.00  86.119
REMARK  ---------------------------------------------------------- 
MOLECULE T0288TS168_5
PFRMAT TS
TARGET T0288
MODEL 5
PARENT N/A
ATOM      1  CA  SER     1      25.494   8.251  30.641  1.00 25.00           C
ATOM      2  CA  MET     2      24.721  11.912  30.690  1.00 25.00           C
ATOM      3  CA  VAL     3      25.940  12.586  27.110  1.00 25.00           C
ATOM      4  CA  PRO     4      24.766  13.167  23.524  1.00 25.00           C
ATOM      5  CA  GLY     5      24.010  16.865  23.966  1.00 25.00           C
ATOM      6  CA  LYS     6      20.676  17.480  22.347  1.00 25.00           C
ATOM      7  CA  VAL     7      20.391  20.155  19.711  1.00 25.00           C
ATOM      8  CA  THR     8      20.471  21.466  16.138  1.00 25.00           C
ATOM      9  CA  LEU     9      20.280  24.053  13.355  1.00 25.00           C
ATOM     10  CA  GLN    10      17.270  25.089  11.362  1.00 25.00           C
ATOM     11  CA  LYS    11      19.163  25.841   8.100  1.00 25.00           C
ATOM     12  CA  ASP    12      19.178  29.671   8.116  1.00 25.00           C
ATOM     13  CA  ALA    13      18.252  29.513   4.385  1.00 25.00           C
ATOM     14  CA  GLN    14      21.559  29.692   2.574  1.00 25.00           C
ATOM     15  CA  ASN    15      21.333  25.839   2.523  1.00 25.00           C
ATOM     16  CA  LEU    16      23.592  23.859   4.907  1.00 25.00           C
ATOM     17  CA  ILE    17      25.478  24.213   8.126  1.00 25.00           C
ATOM     18  CA  GLY    18      28.671  26.004   6.944  1.00 25.00           C
ATOM     19  CA  ILE    19      30.524  23.123   8.594  1.00 25.00           C
ATOM     20  CA  SER    20      32.374  21.077   5.972  1.00 25.00           C
ATOM     21  CA  ILE    21      33.432  17.616   6.939  1.00 25.00           C
ATOM     22  CA  GLY    22      36.063  15.173   8.137  1.00 25.00           C
ATOM     23  CA  GLY    23      37.274  12.289  10.350  1.00 25.00           C
ATOM     24  CA  GLY    24      35.618   8.986   9.376  1.00 25.00           C
ATOM     25  CA  ALA    25      37.626   6.351   7.394  1.00 25.00           C
ATOM     26  CA  GLN    26      40.104   5.922  10.259  1.00 25.00           C
ATOM     27  CA  TYR    27      39.515   8.406  13.081  1.00 25.00           C
ATOM     28  CA  CYS    28      37.542   6.032  15.267  1.00 25.00           C
ATOM     29  CA  PRO    29      34.587   5.268  12.971  1.00 25.00           C
ATOM     30  CA  CYS    30      32.908   8.576  13.742  1.00 25.00           C
ATOM     31  CA  LEU    31      31.753  11.484  11.550  1.00 25.00           C
ATOM     32  CA  TYR    32      32.149  15.307  11.300  1.00 25.00           C
ATOM     33  CA  ILE    33      33.742  18.727  12.008  1.00 25.00           C
ATOM     34  CA  VAL    34      36.571  21.239  11.531  1.00 25.00           C
ATOM     35  CA  GLN    35      34.977  24.736  11.563  1.00 25.00           C
ATOM     36  CA  VAL    36      31.579  26.211  12.424  1.00 25.00           C
ATOM     37  CA  PHE    37      32.025  29.416  10.411  1.00 25.00           C
ATOM     38  CA  ASP    38      30.586  32.897  10.155  1.00 25.00           C
ATOM     39  CA  ASN    39      27.338  34.110  11.614  1.00 25.00           C
ATOM     40  CA  THR    40      26.061  30.649  10.745  1.00 25.00           C
ATOM     41  CA  PRO    41      24.860  27.404  12.245  1.00 25.00           C
ATOM     42  CA  ALA    42      27.181  25.879  14.902  1.00 25.00           C
ATOM     43  CA  ALA    43      28.348  29.468  15.598  1.00 25.00           C
ATOM     44  CA  LEU    44      24.991  31.255  15.715  1.00 25.00           C
ATOM     45  CA  ASP    45      23.166  28.346  17.415  1.00 25.00           C
ATOM     46  CA  GLY    46      25.989  27.463  19.816  1.00 25.00           C
ATOM     47  CA  THR    47      24.593  23.986  20.285  1.00 25.00           C
ATOM     48  CA  VAL    48      27.541  22.308  18.456  1.00 25.00           C
ATOM     49  CA  ALA    49      31.247  22.654  17.704  1.00 25.00           C
ATOM     50  CA  ALA    50      34.966  23.281  17.176  1.00 25.00           C
ATOM     51  CA  GLY    51      35.119  19.440  16.902  1.00 25.00           C
ATOM     52  CA  ASP    52      31.826  17.523  16.851  1.00 25.00           C
ATOM     53  CA  GLU    53      31.850  13.764  16.401  1.00 25.00           C
ATOM     54  CA  ILE    54      28.520  14.227  14.653  1.00 25.00           C
ATOM     55  CA  THR    55      26.153  11.296  14.232  1.00 25.00           C
ATOM     56  CA  GLY    56      22.436  11.234  13.536  1.00 25.00           C
ATOM     57  CA  VAL    57      19.770  11.662  10.843  1.00 25.00           C
ATOM     58  CA  ASN    58      17.101  12.555  13.360  1.00 25.00           C
ATOM     59  CA  GLY    59      16.963   8.974  14.771  1.00 25.00           C
ATOM     60  CA  ARG    60      18.787   6.944  12.141  1.00 25.00           C
ATOM     61  CA  SER    61      22.533   6.249  12.636  1.00 25.00           C
ATOM     62  CA  ILE    62      25.351   7.836  10.557  1.00 25.00           C
ATOM     63  CA  LYS    63      28.138   6.239  12.535  1.00 25.00           C
ATOM     64  CA  GLY    64      30.084   3.449  10.772  1.00 25.00           C
ATOM     65  CA  LYS    65      29.705   4.916   7.319  1.00 25.00           C
ATOM     66  CA  THR    66      32.008   7.354   5.560  1.00 25.00           C
ATOM     67  CA  LYS    67      32.449  11.131   5.918  1.00 25.00           C
ATOM     68  CA  VAL    68      31.154  11.668   2.355  1.00 25.00           C
ATOM     69  CA  GLU    69      27.985   9.685   3.181  1.00 25.00           C
ATOM     70  CA  VAL    70      27.456  11.794   6.334  1.00 25.00           C
ATOM     71  CA  ALA    71      27.885  15.003   4.288  1.00 25.00           C
ATOM     72  CA  LYS    72      25.340  13.737   1.721  1.00 25.00           C
ATOM     73  CA  MET    73      22.870  12.924   4.534  1.00 25.00           C
ATOM     74  CA  ILE    74      23.349  16.430   5.999  1.00 25.00           C
ATOM     75  CA  GLN    75      22.728  17.982   2.553  1.00 25.00           C
ATOM     76  CA  GLU    76      19.542  15.895   2.160  1.00 25.00           C
ATOM     77  CA  VAL    77      17.341  17.067   5.075  1.00 25.00           C
ATOM     78  CA  LYS    78      15.839  20.184   3.433  1.00 25.00           C
ATOM     79  CA  GLY    79      13.372  21.591   5.969  1.00 25.00           C
ATOM     80  CA  GLU    80      14.187  20.686   9.589  1.00 25.00           C
ATOM     81  CA  VAL    81      17.651  19.410  10.719  1.00 25.00           C
ATOM     82  CA  THR    82      18.950  17.383  13.684  1.00 25.00           C
ATOM     83  CA  ILE    83      22.502  16.543  14.820  1.00 25.00           C
ATOM     84  CA  HIS    84      23.426  15.263  18.280  1.00 25.00           C
ATOM     85  CA  TYR    85      27.027  15.997  19.259  1.00 25.00           C
ATOM     86  CA  ASN    86      29.075  13.333  20.976  1.00 25.00           C
ATOM     87  CA  LYS    87      31.624  15.849  22.120  1.00 25.00           C
ATOM     88  CA  LEU    88      35.159  16.214  23.608  1.00 25.00           C
ATOM     89  CA  GLN    89      37.315  17.400  26.453  1.00 25.00           C
ATOM     90  CA  TYR    90      40.963  18.403  26.095  1.00 25.00           C
ATOM     91  CA  TYR    91      42.120  17.596  29.644  1.00 25.00           C
ATOM     92  CA  LYS    92      42.774  16.941  33.263  1.00 25.00           C
ATOM     93  CA  VAL    93      45.808  17.176  35.610  1.00 25.00           C
TER
END
