
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   93 (   93),  selected   93 , name T0288TS393_5
# Molecule2: number of CA atoms   91 (  667),  selected   91 , name T0288
# PARAMETERS: T0288TS393_5.T0288  -4  -ie  -d:5  -o1  -sia  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    S       1      S       1           -
LGA    M       2      M       2           -
LGA    V       3      V       3           #
LGA    P       4      P       4          1.887
LGA    G       5      G       5          1.212
LGA    K       6      K       6          3.137
LGA    V       7      V       7          1.511
LGA    T       8      T       8          2.503
LGA    L       9      L       9          2.312
LGA    Q      10      Q      10          1.841
LGA    K      11      K      11          1.259
LGA    D      12      D      12          1.505
LGA    A      13      A      13          1.251
LGA    Q      14      Q      14          0.896
LGA    N      15      N      15          1.030
LGA    L      16      L      16          2.190
LGA    I      17      I      17          1.790
LGA    G      18      G      18          1.255
LGA    I      19      I      19          1.531
LGA    S      20      S      20          2.024
LGA    I      21      I      21          1.428
LGA    G      22      G      22          1.639
LGA    G      23      G      23          1.012
LGA    G      24      G      24          2.581
LGA    A      25      A      25          4.683
LGA    Q      26      Q      26          2.092
LGA    Y      27      -       -           -
LGA    C      28      P      29          2.342
LGA    P      29      C      30          2.104
LGA    C      30      L      31          2.781
LGA    L      31      -       -           -
LGA    Y      32      Y      32          1.547
LGA    I      33      I      33          1.336
LGA    V      34      V      34          2.116
LGA    Q      35      Q      35          1.435
LGA    V      36      V      36          0.834
LGA    F      37      F      37          0.767
LGA    D      38      D      38          1.290
LGA    N      39      N      39          2.072
LGA    T      40      T      40          0.885
LGA    P      41      P      41          4.304
LGA    A      42      A      42          1.393
LGA    A      43      A      43          5.223
LGA    L      44      L      44          1.890
LGA    D      45      D      45          1.887
LGA    G      46      G      46          1.293
LGA    T      47      T      47          1.260
LGA    V      48      V      48          1.233
LGA    A      49      A      49          1.469
LGA    A      50      A      50          1.049
LGA    G      51      G      51          1.111
LGA    D      52      D      52          1.644
LGA    E      53      E      53          1.387
LGA    I      54      I      54          1.102
LGA    T      55      T      55          1.826
LGA    G      56      G      56          2.282
LGA    V      57      V      57          1.839
LGA    N      58      N      58          0.282
LGA    G      59      G      59          2.052
LGA    R      60      R      60          2.318
LGA    S      61      S      61          2.048
LGA    I      62      I      62          1.524
LGA    K      63      K      63          2.747
LGA    G      64      G      64          2.581
LGA    K      65      K      65          1.173
LGA    T      66      T      66          1.339
LGA    K      67      K      67          0.743
LGA    V      68      V      68          1.058
LGA    E      69      E      69          1.151
LGA    V      70      V      70          0.917
LGA    A      71      A      71          0.581
LGA    K      72      K      72          1.158
LGA    M      73      M      73          1.080
LGA    I      74      I      74          0.731
LGA    Q      75      Q      75          0.941
LGA    E      76      E      76          1.561
LGA    V      77      V      77          0.639
LGA    K      78      K      78          1.801
LGA    G      79      G      79          1.069
LGA    E      80      E      80          1.573
LGA    V      81      V      81          0.912
LGA    T      82      T      82          1.232
LGA    I      83      I      83          0.718
LGA    H      84      H      84          0.441
LGA    Y      85      Y      85          1.128
LGA    N      86      N      86          1.209
LGA    K      87      K      87          1.300
LGA    L      88      L      88          0.559
LGA    Q      89      Q      89          1.102
LGA    Y      90      Y      90          4.395
LGA    Y      91      Y      91          5.150
LGA    K      92      K      92           -
LGA    V      93      V      93           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   93   91    5.0     86    1.92    96.51     84.668     4.247

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.166315 * X  +  -0.396791 * Y  +  -0.902716 * Z  +  27.556376
  Y_new =   0.417917 * X  +  -0.800816 * Y  +   0.428997 * Z  +  17.431894
  Z_new =  -0.893132 * X  +  -0.448609 * Y  +   0.032638 * Z  +  13.098401 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.498170    1.643422  [ DEG:   -85.8388     94.1612 ]
  Theta =   1.104261    2.037332  [ DEG:    63.2695    116.7305 ]
  Phi   =   1.192048   -1.949544  [ DEG:    68.2993   -111.7007 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0288TS393_5                                  
REMARK     2: T0288                                         
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0288TS393_5.T0288 -4 -ie -d:5 -o1 -sia 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   93   91   5.0   86   1.92   96.51  84.668
REMARK  ---------------------------------------------------------- 
MOLECULE T0288TS393_5
PFRMAT TS
TARGET T0288
MODEL 5
PARENT N/A
ATOM      1  CA  SER     1      23.616  10.252  32.123  1.00 25.00           C
ATOM      2  CA  MET     2      26.533  10.985  29.794  1.00 25.00           C
ATOM      3  CA  VAL     3      24.191  10.929  26.871  1.00 25.00           C
ATOM      4  CA  PRO     4      24.900  13.966  24.619  1.00 25.00           C
ATOM      5  CA  GLY     5      21.915  16.133  23.697  1.00 25.00           C
ATOM      6  CA  LYS     6      22.934  18.999  21.411  1.00 25.00           C
ATOM      7  CA  VAL     7      21.624  20.765  18.378  1.00 25.00           C
ATOM      8  CA  THR     8      19.236  22.807  16.265  1.00 25.00           C
ATOM      9  CA  LEU     9      21.563  23.675  13.349  1.00 25.00           C
ATOM     10  CA  GLN    10      18.494  25.519  12.012  1.00 25.00           C
ATOM     11  CA  LYS    11      18.238  25.615   8.161  1.00 25.00           C
ATOM     12  CA  ASP    12      18.545  29.024   6.483  1.00 25.00           C
ATOM     13  CA  ALA    13      20.167  30.331   3.298  1.00 25.00           C
ATOM     14  CA  GLN    14      22.936  28.385   1.606  1.00 25.00           C
ATOM     15  CA  ASN    15      21.411  25.326   3.309  1.00 25.00           C
ATOM     16  CA  LEU    16      24.291  23.185   4.523  1.00 25.00           C
ATOM     17  CA  ILE    17      23.226  23.089   8.191  1.00 25.00           C
ATOM     18  CA  GLY    18      26.457  25.116   8.724  1.00 25.00           C
ATOM     19  CA  ILE    19      29.531  22.849   8.337  1.00 25.00           C
ATOM     20  CA  SER    20      32.008  21.004   6.100  1.00 25.00           C
ATOM     21  CA  ILE    21      32.081  17.383   7.384  1.00 25.00           C
ATOM     22  CA  GLY    22      35.151  15.136   7.350  1.00 25.00           C
ATOM     23  CA  GLY    23      36.435  12.437   9.714  1.00 25.00           C
ATOM     24  CA  GLY    24      38.016  10.658   6.784  1.00 25.00           C
ATOM     25  CA  ALA    25      37.177   7.068   6.031  1.00 25.00           C
ATOM     26  CA  GLN    26      40.166   5.944   8.073  1.00 25.00           C
ATOM     27  CA  TYR    27      38.991   8.009  11.002  1.00 25.00           C
ATOM     28  CA  CYS    28      37.223   4.888  12.383  1.00 25.00           C
ATOM     29  CA  PRO    29      35.469   7.197  14.898  1.00 25.00           C
ATOM     30  CA  CYS    30      32.991   8.878  12.552  1.00 25.00           C
ATOM     31  CA  LEU    31      31.649  12.233  11.278  1.00 25.00           C
ATOM     32  CA  TYR    32      33.364  15.485  12.279  1.00 25.00           C
ATOM     33  CA  ILE    33      33.465  19.259  12.265  1.00 25.00           C
ATOM     34  CA  VAL    34      35.719  21.558  10.147  1.00 25.00           C
ATOM     35  CA  GLN    35      34.124  24.927  10.874  1.00 25.00           C
ATOM     36  CA  VAL    36      31.233  26.701  12.605  1.00 25.00           C
ATOM     37  CA  PHE    37      30.941  29.517   9.989  1.00 25.00           C
ATOM     38  CA  ASP    38      29.856  33.128  10.540  1.00 25.00           C
ATOM     39  CA  ASN    39      26.677  33.712   8.569  1.00 25.00           C
ATOM     40  CA  THR    40      25.855  30.133   9.503  1.00 25.00           C
ATOM     41  CA  PRO    41      26.567  30.274  13.224  1.00 25.00           C
ATOM     42  CA  ALA    42      25.583  27.140  15.099  1.00 25.00           C
ATOM     43  CA  ALA    43      22.084  28.666  14.791  1.00 25.00           C
ATOM     44  CA  LEU    44      22.932  31.222  17.513  1.00 25.00           C
ATOM     45  CA  ASP    45      23.643  28.420  20.000  1.00 25.00           C
ATOM     46  CA  GLY    46      27.238  27.270  20.123  1.00 25.00           C
ATOM     47  CA  THR    47      25.679  23.754  19.925  1.00 25.00           C
ATOM     48  CA  VAL    48      28.475  23.077  17.457  1.00 25.00           C
ATOM     49  CA  ALA    49      31.924  24.575  18.250  1.00 25.00           C
ATOM     50  CA  ALA    50      34.575  22.857  16.060  1.00 25.00           C
ATOM     51  CA  GLY    51      35.529  19.394  17.211  1.00 25.00           C
ATOM     52  CA  ASP    52      31.844  18.743  18.034  1.00 25.00           C
ATOM     53  CA  GLU    53      32.411  15.046  17.551  1.00 25.00           C
ATOM     54  CA  ILE    54      29.466  14.239  15.312  1.00 25.00           C
ATOM     55  CA  THR    55      26.724  11.612  14.894  1.00 25.00           C
ATOM     56  CA  GLY    56      23.537  12.499  12.952  1.00 25.00           C
ATOM     57  CA  VAL    57      20.610  12.021  10.529  1.00 25.00           C
ATOM     58  CA  ASN    58      17.475  12.963  12.472  1.00 25.00           C
ATOM     59  CA  GLY    59      17.335   9.241  13.323  1.00 25.00           C
ATOM     60  CA  ARG    60      19.369   7.121  10.818  1.00 25.00           C
ATOM     61  CA  SER    61      22.918   6.176  11.865  1.00 25.00           C
ATOM     62  CA  ILE    62      25.743   8.484  10.721  1.00 25.00           C
ATOM     63  CA  LYS    63      27.958   6.662  13.219  1.00 25.00           C
ATOM     64  CA  GLY    64      29.442   3.623  11.479  1.00 25.00           C
ATOM     65  CA  LYS    65      28.681   5.284   8.178  1.00 25.00           C
ATOM     66  CA  THR    66      31.763   6.581   6.456  1.00 25.00           C
ATOM     67  CA  LYS    67      32.127  10.415   6.524  1.00 25.00           C
ATOM     68  CA  VAL    68      30.850  10.694   2.925  1.00 25.00           C
ATOM     69  CA  GLU    69      27.562   9.009   3.935  1.00 25.00           C
ATOM     70  CA  VAL    70      27.191  11.439   6.871  1.00 25.00           C
ATOM     71  CA  ALA    71      27.816  14.404   4.528  1.00 25.00           C
ATOM     72  CA  LYS    72      25.179  13.067   2.093  1.00 25.00           C
ATOM     73  CA  MET    73      22.678  12.690   4.969  1.00 25.00           C
ATOM     74  CA  ILE    74      23.392  16.281   6.092  1.00 25.00           C
ATOM     75  CA  GLN    75      22.854  17.534   2.514  1.00 25.00           C
ATOM     76  CA  GLU    76      19.536  15.632   2.320  1.00 25.00           C
ATOM     77  CA  VAL    77      17.651  18.096   4.446  1.00 25.00           C
ATOM     78  CA  LYS    78      16.619  21.669   3.667  1.00 25.00           C
ATOM     79  CA  GLY    79      14.605  22.430   6.820  1.00 25.00           C
ATOM     80  CA  GLU    80      15.124  20.929  10.202  1.00 25.00           C
ATOM     81  CA  VAL    81      18.424  19.404  11.233  1.00 25.00           C
ATOM     82  CA  THR    82      18.168  17.861  14.676  1.00 25.00           C
ATOM     83  CA  ILE    83      21.904  17.003  14.590  1.00 25.00           C
ATOM     84  CA  HIS    84      23.174  14.782  17.390  1.00 25.00           C
ATOM     85  CA  TYR    85      26.425  16.153  18.811  1.00 25.00           C
ATOM     86  CA  ASN    86      28.646  13.778  20.678  1.00 25.00           C
ATOM     87  CA  LYS    87      31.100  15.240  23.117  1.00 25.00           C
ATOM     88  CA  LEU    88      34.831  14.680  23.584  1.00 25.00           C
ATOM     89  CA  GLN    89      36.714  16.184  26.525  1.00 25.00           C
ATOM     90  CA  TYR    90      40.032  15.211  28.134  1.00 25.00           C
ATOM     91  CA  TYR    91      43.387  15.614  29.755  1.00 25.00           C
ATOM     92  CA  LYS    92      43.742  12.411  31.758  1.00 25.00           C
ATOM     93  CA  VAL    93      44.791   8.751  31.496  1.00 25.00           C
TER
END
