
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   23 (  115),  selected   23 , name T0300TS239_2_2
# Molecule2: number of CA atoms   89 (  695),  selected   89 , name T0300
# PARAMETERS: T0300TS239_2_2.T0300  -4  -ie  -d:5  -o1  -sia  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    -       -      D       7           -
LGA    -       -      K       8           -
LGA    -       -      T       9           -
LGA    -       -      Y      10           -
LGA    -       -      E      11           -
LGA    -       -      E      12           -
LGA    -       -      M      13           -
LGA    -       -      V      14           -
LGA    -       -      K      15           -
LGA    -       -      E      16           -
LGA    -       -      V      17           -
LGA    -       -      E      18           -
LGA    -       -      R      19           -
LGA    -       -      L      20           -
LGA    -       -      K      21           -
LGA    -       -      L      22           -
LGA    -       -      E      23           -
LGA    -       -      N      24           -
LGA    -       -      K      25           -
LGA    -       -      T      26           -
LGA    -       -      L      27           -
LGA    -       -      K      28           -
LGA    -       -      Q      29           -
LGA    -       -      K      30           -
LGA    -       -      V      31           -
LGA    -       -      S      39           -
LGA    -       -      D      40           -
LGA    -       -      D      41           -
LGA    -       -      S      42           -
LGA    -       -      I      43           -
LGA    -       -      L      44           -
LGA    -       -      T      45           -
LGA    -       -      A      46           -
LGA    V      80      A      47          4.064
LGA    T      81      K      48          0.873
LGA    E      82      R      49          1.758
LGA    -       -      E      50           -
LGA    -       -      S      51           -
LGA    Q      83      I      52          1.178
LGA    E      84      I      53          1.847
LGA    L      85      V      54          1.753
LGA    T      86      S      55          0.960
LGA    S      87      S      56          0.243
LGA    L      88      S      57          0.354
LGA    L      89      R      58          0.752
LGA    Q      90      A      59          0.484
LGA    S      91      L      60          0.686
LGA    L      92      G      61          0.618
LGA    T      93      A      62          0.745
LGA    L      94      V      63          0.696
LGA    R      95      A      64          0.257
LGA    V      96      M      65          0.441
LGA    D      97      R      66          0.607
LGA    V      98      K      67          0.423
LGA    S      99      I      68          0.373
LGA    M     100      E      69          0.400
LGA    E     101      A      70          0.320
LGA    E     102      K      71          0.342
LGA    -       -      V      72           -
LGA    -       -      R      73           -
LGA    -       -      S      74           -
LGA    -       -      R      75           -
LGA    -       -      A      76           -
LGA    -       -      A      77           -
LGA    -       -      K      78           -
LGA    -       -      A      79           -
LGA    -       -      V      80           -
LGA    -       -      T      81           -
LGA    -       -      E      82           -
LGA    -       -      Q      83           -
LGA    -       -      E      84           -
LGA    -       -      L      85           -
LGA    -       -      T      86           -
LGA    -       -      S      87           -
LGA    -       -      L      88           -
LGA    -       -      L      89           -
LGA    -       -      Q      90           -
LGA    -       -      S      91           -
LGA    -       -      L      92           -
LGA    -       -      T      93           -
LGA    -       -      L      94           -
LGA    -       -      R      95           -
LGA    -       -      V      96           -
LGA    -       -      D      97           -
LGA    -       -      V      98           -
LGA    -       -      S      99           -
LGA    -       -      M     100           -
LGA    -       -      E     101           -
LGA    -       -      E     102           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   23   89    5.0     23    1.20     4.35     25.187     1.763

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.038559 * X  +  -0.544648 * Y  +  -0.837778 * Z  +  97.504478
  Y_new =   0.945837 * X  +  -0.250562 * Y  +   0.206425 * Z  + -129.134247
  Z_new =  -0.322344 * X  +  -0.800361 * Y  +   0.505486 * Z  +  68.601173 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.007484    2.134108  [ DEG:   -57.7246    122.2754 ]
  Theta =   0.328205    2.813388  [ DEG:    18.8048    161.1952 ]
  Phi   =   1.530052   -1.611541  [ DEG:    87.6655    -92.3345 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0300TS239_2_2                                
REMARK     2: T0300                                         
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0300TS239_2_2.T0300 -4 -ie -d:5 -o1 -sia 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   23   89   5.0   23   1.20    4.35  25.187
REMARK  ---------------------------------------------------------- 
MOLECULE T0300TS239_2_2
REMARK PARENT number 2
PFRMAT TS
TARGET T0300
PARENT 1avo_B
ATOM    364  N   VAL    80      53.055  -9.323 -11.208  1.00  9.99
ATOM    365  CA  VAL    80      51.898  -8.831 -11.970  1.00  9.99
ATOM    366  C   VAL    80      51.439  -9.771 -13.087  1.00  9.99
ATOM    367  O   VAL    80      50.332  -9.634 -13.634  1.00  9.99
ATOM    368  CB  VAL    80      52.372  -7.477 -12.484  1.00  9.99
ATOM    369  N   THR    81      52.269 -10.749 -13.404  1.00  9.99
ATOM    370  CA  THR    81      51.896 -11.700 -14.425  1.00  9.99
ATOM    371  C   THR    81      51.006 -12.806 -13.852  1.00  9.99
ATOM    372  O   THR    81      50.337 -13.527 -14.605  1.00  9.99
ATOM    373  CB  THR    81      53.159 -12.316 -15.065  1.00  9.99
ATOM    374  N   GLU    82      51.046 -12.972 -12.526  1.00  9.99
ATOM    375  CA  GLU    82      50.286 -14.021 -11.873  1.00  9.99
ATOM    376  C   GLU    82      48.964 -13.436 -11.492  1.00  9.99
ATOM    377  O   GLU    82      48.898 -12.573 -10.624  1.00  9.99
ATOM    378  CB  GLU    82      50.993 -14.549 -10.669  1.00  9.99
ATOM    379  N   GLN    83      47.927 -13.872 -12.205  1.00  9.99
ATOM    380  CA  GLN    83      46.608 -13.355 -11.988  1.00  9.99
ATOM    381  C   GLN    83      45.914 -13.902 -10.778  1.00  9.99
ATOM    382  O   GLN    83      44.930 -13.314 -10.311  1.00  9.99
ATOM    383  CB  GLN    83      45.774 -13.624 -13.251  1.00  9.99
ATOM    384  N   GLU    84      46.399 -15.034 -10.275  1.00  9.99
ATOM    385  CA  GLU    84      45.798 -15.661  -9.103  1.00  9.99
ATOM    386  C   GLU    84      45.969 -14.808  -7.867  1.00  9.99
ATOM    387  O   GLU    84      45.131 -14.844  -6.967  1.00  9.99
ATOM    388  CB  GLU    84      46.348 -17.054  -8.901  1.00  9.99
ATOM    389  N   LEU    85      47.008 -13.976  -7.856  1.00  9.99
ATOM    390  CA  LEU    85      47.238 -13.105  -6.726  1.00  9.99
ATOM    391  C   LEU    85      46.236 -11.956  -6.718  1.00  9.99
ATOM    392  O   LEU    85      45.837 -11.475  -5.653  1.00  9.99
ATOM    393  CB  LEU    85      48.664 -12.574  -6.729  1.00  9.99
ATOM    394  N   THR    86      45.788 -11.518  -7.881  1.00  9.99
ATOM    395  CA  THR    86      44.823 -10.441  -7.861  1.00  9.99
ATOM    396  C   THR    86      43.513 -11.035  -7.459  1.00  9.99
ATOM    397  O   THR    86      42.752 -10.405  -6.719  1.00  9.99
ATOM    398  CB  THR    86      44.682  -9.759  -9.194  1.00  9.99
ATOM    399  N   SER    87      43.262 -12.264  -7.914  1.00  9.99
ATOM    400  CA  SER    87      42.011 -12.900  -7.549  1.00  9.99
ATOM    401  C   SER    87      41.990 -13.201  -6.051  1.00  9.99
ATOM    402  O   SER    87      40.969 -13.042  -5.390  1.00  9.99
ATOM    403  CB  SER    87      41.786 -14.168  -8.336  1.00  9.99
ATOM    404  N   LEU    88      43.132 -13.618  -5.517  1.00  9.99
ATOM    405  CA  LEU    88      43.242 -13.936  -4.105  1.00  9.99
ATOM    406  C   LEU    88      42.852 -12.706  -3.336  1.00  9.99
ATOM    407  O   LEU    88      41.999 -12.773  -2.465  1.00  9.99
ATOM    408  CB  LEU    88      44.661 -14.300  -3.745  1.00  9.99
ATOM    409  N   LEU    89      43.431 -11.564  -3.668  1.00  9.99
ATOM    410  CA  LEU    89      43.041 -10.364  -2.929  1.00  9.99
ATOM    411  C   LEU    89      41.528 -10.149  -2.883  1.00  9.99
ATOM    412  O   LEU    89      40.977  -9.771  -1.865  1.00  9.99
ATOM    413  CB  LEU    89      43.649  -9.108  -3.506  1.00  9.99
ATOM    414  N   GLN    90      40.837 -10.433  -3.969  1.00  9.99
ATOM    415  CA  GLN    90      39.397 -10.227  -3.960  1.00  9.99
ATOM    416  C   GLN    90      38.663 -11.318  -3.253  1.00  9.99
ATOM    417  O   GLN    90      37.582 -11.121  -2.744  1.00  9.99
ATOM    418  CB  GLN    90      38.859  -9.996  -5.367  1.00  9.99
ATOM    419  N   SER    91      39.299 -12.460  -3.151  1.00  9.99
ATOM    420  CA  SER    91      38.683 -13.558  -2.468  1.00  9.99
ATOM    421  C   SER    91      38.759 -13.318  -0.966  1.00  9.99
ATOM    422  O   SER    91      37.810 -13.630  -0.246  1.00  9.99
ATOM    423  CB  SER    91      39.349 -14.853  -2.883  1.00  9.99
ATOM    424  N   LEU    92      39.841 -12.691  -0.504  1.00  9.99
ATOM    425  CA  LEU    92      40.000 -12.386   0.917  1.00  9.99
ATOM    426  C   LEU    92      38.941 -11.385   1.372  1.00  9.99
ATOM    427  O   LEU    92      38.392 -11.517   2.462  1.00  9.99
ATOM    428  CB  LEU    92      41.402 -11.825   1.222  1.00  9.99
ATOM    429  N   THR    93      38.672 -10.378   0.550  1.00  9.99
ATOM    430  CA  THR    93      37.691  -9.377   0.915  1.00  9.99
ATOM    431  C   THR    93      36.319  -9.999   0.986  1.00  9.99
ATOM    432  O   THR    93      35.578  -9.781   1.926  1.00  9.99
ATOM    433  CB  THR    93      37.688  -8.226  -0.087  1.00  9.99
ATOM    434  N   LEU    94      35.986 -10.822   0.007  1.00  9.99
ATOM    435  CA  LEU    94      34.676 -11.447   0.008  1.00  9.99
ATOM    436  C   LEU    94      34.530 -12.292   1.216  1.00  9.99
ATOM    437  O   LEU    94      33.513 -12.254   1.875  1.00  9.99
ATOM    438  CB  LEU    94      34.480 -12.312  -1.210  1.00  9.99
ATOM    439  N   ARG    95      35.580 -13.027   1.544  1.00  9.99
ATOM    440  CA  ARG    95      35.521 -13.882   2.710  1.00  9.99
ATOM    441  C   ARG    95      35.444 -13.073   3.953  1.00  9.99
ATOM    442  O   ARG    95      34.660 -13.383   4.800  1.00  9.99
ATOM    443  CB  ARG    95      36.676 -14.766   2.781  1.00  9.99
ATOM    444  N   VAL    96      36.208 -11.995   4.068  1.00  9.99
ATOM    445  CA  VAL    96      36.145 -11.227   5.308  1.00  9.99
ATOM    446  C   VAL    96      34.739 -10.682   5.440  1.00  9.99
ATOM    447  O   VAL    96      34.179 -10.621   6.521  1.00  9.99
ATOM    448  CB  VAL    96      37.194 -10.135   5.367  1.00  9.99
ATOM    449  N   ASP    97      34.114 -10.409   4.313  1.00  9.99
ATOM    450  CA  ASP    97      32.780  -9.886   4.387  1.00  9.99
ATOM    451  C   ASP    97      31.836 -10.981   4.864  1.00  9.99
ATOM    452  O   ASP    97      31.003 -10.753   5.720  1.00  9.99
ATOM    453  CB  ASP    97      32.357  -9.314   3.051  1.00  9.99
ATOM    454  N   VAL    98      32.005 -12.191   4.347  1.00  9.99
ATOM    455  CA  VAL    98      31.146 -13.290   4.751  1.00  9.99
ATOM    456  C   VAL    98      31.296 -13.655   6.196  1.00  9.99
ATOM    457  O   VAL    98      30.347 -14.116   6.803  1.00  9.99
ATOM    458  CB  VAL    98      31.367 -14.495   3.882  1.00  9.99
ATOM    459  N   SER    99      32.476 -13.387   6.750  1.00  9.99
ATOM    460  CA  SER    99      32.801 -13.676   8.157  1.00  9.99
ATOM    461  C   SER    99      32.208 -12.676   9.102  1.00  9.99
ATOM    462  O   SER    99      31.693 -13.049  10.152  1.00  9.99
ATOM    463  CB  SER    99      34.286 -13.645   8.399  1.00  9.99
ATOM    464  N   MET   100      32.350 -11.396   8.780  1.00  9.99
ATOM    465  CA  MET   100      31.776 -10.366   9.610  1.00  9.99
ATOM    466  C   MET   100      30.297 -10.666   9.852  1.00  9.99
ATOM    467  O   MET   100      29.810 -10.583  10.970  1.00  9.99
ATOM    468  CB  MET   100      31.863  -9.033   8.952  1.00  9.99
ATOM    469  N   GLU   101      29.583 -11.043   8.797  1.00  9.99
ATOM    470  CA  GLU   101      28.173 -11.345   8.942  1.00  9.99
ATOM    471  C   GLU   101      28.034 -12.513   9.899  1.00  9.99
ATOM    472  O   GLU   101      27.259 -12.461  10.824  1.00  9.99
ATOM    473  CB  GLU   101      27.553 -11.648   7.594  1.00  9.99
ATOM    474  N   GLU   102      28.842 -13.539   9.709  1.00  9.99
ATOM    475  CA  GLU   102      28.817 -14.680  10.587  1.00  9.99
ATOM    476  C   GLU   102      29.229 -14.357  11.997  1.00  9.99
ATOM    477  O   GLU   102      28.706 -14.969  12.915  1.00  9.99
ATOM    478  CB  GLU   102      29.740 -15.731  10.084  1.00  9.99
TER
END
