
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  133 (  133),  selected  133 , name T0307TS168_5
# Molecule2: number of CA atoms  132 ( 1005),  selected  132 , name T0307.pdb
# PARAMETERS: T0307TS168_5.T0307.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1           -
LGA    G       2      G       2           -
LGA    L       3      L       3           -
LGA    G       4      G       4           -
LGA    -       -      R       5           -
LGA    R       5      Q       6           #
LGA    Q       6      S       7          4.189
LGA    S       7      L       8          3.515
LGA    L       8      N       9           -
LGA    N       9      I      10           -
LGA    I      10      M      11           -
LGA    M      11      T      12           -
LGA    T      12      F      13           -
LGA    F      13      S      14           -
LGA    S      14      G      15           -
LGA    -       -      Q      16           -
LGA    -       -      E      17           -
LGA    -       -      L      18           -
LGA    -       -      T      19           -
LGA    -       -      A      20           -
LGA    -       -      I      21           -
LGA    -       -      I      22           -
LGA    -       -      K      23           -
LGA    -       -      M      24           -
LGA    -       -      A      25           -
LGA    -       -      K      26           -
LGA    -       -      S      27           -
LGA    -       -      M      28           -
LGA    -       -      V      29           -
LGA    -       -      M      30           -
LGA    -       -      A      31           -
LGA    -       -      D      32           -
LGA    -       -      G      33           -
LGA    -       -      K      34           -
LGA    -       -      I      35           -
LGA    -       -      K      36           -
LGA    -       -      P      37           -
LGA    -       -      A      38           -
LGA    -       -      E      39           -
LGA    -       -      I      40           -
LGA    -       -      A      41           -
LGA    -       -      V      42           -
LGA    -       -      M      43           -
LGA    -       -      T      44           -
LGA    G      15      R      45          4.413
LGA    Q      16      -       -           -
LGA    E      17      E      46          4.690
LGA    L      18      F      47          2.268
LGA    T      19      M      48          2.428
LGA    A      20      R      49          4.211
LGA    I      21      F      50          4.719
LGA    I      22      -       -           -
LGA    K      23      G      51          5.095
LGA    M      24      -       -           -
LGA    A      25      -       -           -
LGA    K      26      I      52           #
LGA    S      27      L      53           -
LGA    M      28      Q      54           -
LGA    V      29      D      55           -
LGA    M      30      -       -           -
LGA    A      31      -       -           -
LGA    D      32      -       -           -
LGA    G      33      -       -           -
LGA    K      34      -       -           -
LGA    I      35      -       -           -
LGA    K      36      -       -           -
LGA    P      37      -       -           -
LGA    A      38      -       -           -
LGA    E      39      -       -           -
LGA    I      40      -       -           -
LGA    A      41      -       -           -
LGA    V      42      -       -           -
LGA    M      43      -       -           -
LGA    T      44      -       -           -
LGA    R      45      -       -           -
LGA    E      46      -       -           -
LGA    F      47      -       -           -
LGA    M      48      -       -           -
LGA    R      49      -       -           -
LGA    F      50      -       -           -
LGA    G      51      -       -           -
LGA    I      52      -       -           -
LGA    L      53      Q      56           #
LGA    Q      54      V      57           -
LGA    D      55      D      58           -
LGA    Q      56      L      59           #
LGA    V      57      L      60          3.259
LGA    D      58      L      61           #
LGA    -       -      K      62           -
LGA    L      59      A      63          3.787
LGA    L      60      S      64          4.072
LGA    L      61      -       -           -
LGA    K      62      D      65          4.121
LGA    A      63      S      66           -
LGA    S      64      I      67           -
LGA    D      65      E      68           -
LGA    S      66      A      69           -
LGA    -       -      S      70           -
LGA    -       -      Q      71           -
LGA    -       -      A      72           -
LGA    -       -      V      73           -
LGA    -       -      A      74           -
LGA    -       -      L      75           -
LGA    -       -      I      76           -
LGA    -       -      A      77           -
LGA    -       -      R      78           -
LGA    -       -      M      79           -
LGA    -       -      D      80           -
LGA    -       -      E      81           -
LGA    -       -      E      82           -
LGA    -       -      R      83           -
LGA    -       -      K      84           -
LGA    -       -      K      85           -
LGA    -       -      Y      86           -
LGA    -       -      V      87           -
LGA    -       -      A      88           -
LGA    -       -      S      89           -
LGA    -       -      Y      90           -
LGA    -       -      L      91           -
LGA    -       -      G      92           -
LGA    -       -      V      93           -
LGA    I      67      I      94           #
LGA    E      68      -       -           -
LGA    A      69      -       -           -
LGA    S      70      -       -           -
LGA    Q      71      -       -           -
LGA    A      72      -       -           -
LGA    V      73      -       -           -
LGA    A      74      M      95           #
LGA    L      75      A      96           -
LGA    I      76      S      97           -
LGA    A      77      D      98           -
LGA    R      78      G      99           -
LGA    M      79      D     100           -
LGA    D      80      -       -           -
LGA    E      81      -       -           -
LGA    E      82      -       -           -
LGA    R      83      -       -           -
LGA    K      84      -       -           -
LGA    K      85      -       -           -
LGA    Y      86      -       -           -
LGA    V      87      -       -           -
LGA    A      88      -       -           -
LGA    S      89      -       -           -
LGA    Y      90      -       -           -
LGA    L      91      -       -           -
LGA    G      92      -       -           -
LGA    V      93      -       -           -
LGA    I      94      -       -           -
LGA    M      95      -       -           -
LGA    A      96      -       -           -
LGA    S      97      -       -           -
LGA    D      98      -       -           -
LGA    G      99      -       -           -
LGA    D     100      -       -           -
LGA    I     101      -       -           -
LGA    D     102      -       -           -
LGA    D     103      -       -           -
LGA    N     104      -       -           -
LGA    E     105      I     101          3.955
LGA    L     106      D     102          1.966
LGA    A     107      D     103          3.033
LGA    -       -      N     104           -
LGA    L     108      E     105          1.963
LGA    W     109      L     106          2.215
LGA    T     110      A     107          2.183
LGA    L     111      L     108          1.946
LGA    I     112      W     109          1.996
LGA    S     113      T     110          2.063
LGA    T     114      L     111          2.058
LGA    L     115      I     112          2.422
LGA    C     116      S     113          3.725
LGA    G     117      T     114          4.853
LGA    L     118      L     115          4.097
LGA    P     119      C     116          4.452
LGA    T     120      G     117          2.820
LGA    M     121      L     118          1.094
LGA    T     122      P     119          1.746
LGA    V     123      T     120          2.341
LGA    M     124      M     121          4.099
LGA    E     125      -       -           -
LGA    A     126      -       -           -
LGA    I     127      -       -           -
LGA    N     128      T     122          4.259
LGA    N     129      V     123          3.447
LGA    M     130      M     124           #
LGA    K     131      E     125          5.064
LGA    N     132      A     126           #
LGA    L     133      I     127          4.854
LGA    -       -      N     128           -
LGA    -       -      N     129           -
LGA    -       -      M     130           -
LGA    -       -      K     131           -
LGA    -       -      N     132           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  133  132    5.0     37    3.52    10.81     15.975     1.021

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.121117 * X  +  -0.779202 * Y  +  -0.614959 * Z  +  20.621487
  Y_new =  -0.881831 * X  +   0.368900 * Y  +  -0.293747 * Z  +   9.731695
  Z_new =   0.455747 * X  +   0.506712 * Y  +  -0.731804 * Z  +  25.972435 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.535975   -0.605617  [ DEG:   145.3007    -34.6993 ]
  Theta =  -0.473211   -2.668381  [ DEG:   -27.1130   -152.8870 ]
  Phi   =  -1.707290    1.434303  [ DEG:   -97.8205     82.1795 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0307TS168_5                                  
REMARK     2: T0307.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0307TS168_5.T0307.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  133  132   5.0   37   3.52   10.81  15.975
REMARK  ---------------------------------------------------------- 
MOLECULE T0307TS168_5
PFRMAT TS
TARGET T0307
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1      13.250  22.474  52.369  1.00 25.00           C
ATOM      2  CA  GLY     2      10.051  20.394  52.596  1.00 25.00           C
ATOM      3  CA  LEU     3       8.417  22.750  50.056  1.00 25.00           C
ATOM      4  CA  GLY     4       6.717  19.874  48.263  1.00 25.00           C
ATOM      5  CA  ARG     5       3.480  19.414  46.337  1.00 25.00           C
ATOM      6  CA  GLN     6       0.945  19.186  43.557  1.00 25.00           C
ATOM      7  CA  SER     7      -0.679  18.314  40.242  1.00 25.00           C
ATOM      8  CA  LEU     8      -0.897  16.487  36.853  1.00 25.00           C
ATOM      9  CA  ASN     9      -0.641  14.613  33.519  1.00 25.00           C
ATOM     10  CA  ILE    10       0.117  14.728  29.830  1.00 25.00           C
ATOM     11  CA  MET    11       2.099  13.936  26.669  1.00 25.00           C
ATOM     12  CA  THR    12       3.401  17.050  24.930  1.00 25.00           C
ATOM     13  CA  PHE    13       6.793  15.488  24.098  1.00 25.00           C
ATOM     14  CA  SER    14       9.833  17.184  22.730  1.00 25.00           C
ATOM     15  CA  GLY    15      13.174  18.193  24.112  1.00 25.00           C
ATOM     16  CA  GLN    16      11.133  17.599  27.298  1.00 25.00           C
ATOM     17  CA  GLU    17      12.580  14.065  27.595  1.00 25.00           C
ATOM     18  CA  LEU    18      16.123  15.453  27.167  1.00 25.00           C
ATOM     19  CA  THR    19      15.451  18.071  29.880  1.00 25.00           C
ATOM     20  CA  ALA    20      14.147  15.340  32.227  1.00 25.00           C
ATOM     21  CA  ILE    21      17.277  13.237  31.560  1.00 25.00           C
ATOM     22  CA  ILE    22      19.501  16.265  32.306  1.00 25.00           C
ATOM     23  CA  LYS    23      17.604  16.883  35.575  1.00 25.00           C
ATOM     24  CA  MET    24      18.045  13.207  36.555  1.00 25.00           C
ATOM     25  CA  ALA    25      21.795  13.433  35.806  1.00 25.00           C
ATOM     26  CA  LYS    26      22.057  16.597  37.948  1.00 25.00           C
ATOM     27  CA  SER    27      20.221  14.839  40.813  1.00 25.00           C
ATOM     28  CA  MET    28      22.602  11.851  40.538  1.00 25.00           C
ATOM     29  CA  VAL    29      25.616  14.213  40.629  1.00 25.00           C
ATOM     30  CA  MET    30      24.194  15.947  43.734  1.00 25.00           C
ATOM     31  CA  ALA    31      25.660  16.084  47.224  1.00 25.00           C
ATOM     32  CA  ASP    32      27.282  17.248  50.460  1.00 25.00           C
ATOM     33  CA  GLY    33      28.990  18.609  53.588  1.00 25.00           C
ATOM     34  CA  LYS    34      30.717  20.019  56.649  1.00 25.00           C
ATOM     35  CA  ILE    35      32.359  21.658  59.663  1.00 25.00           C
ATOM     36  CA  LYS    36      33.888  24.375  61.779  1.00 25.00           C
ATOM     37  CA  PRO    37      35.090  27.732  63.056  1.00 25.00           C
ATOM     38  CA  ALA    38      31.761  28.760  61.465  1.00 25.00           C
ATOM     39  CA  GLU    39      33.633  30.535  58.635  1.00 25.00           C
ATOM     40  CA  ILE    40      35.774  27.412  58.058  1.00 25.00           C
ATOM     41  CA  ALA    41      32.620  25.242  57.939  1.00 25.00           C
ATOM     42  CA  VAL    42      31.037  27.640  55.407  1.00 25.00           C
ATOM     43  CA  MET    43      34.202  27.498  53.257  1.00 25.00           C
ATOM     44  CA  THR    44      34.148  23.671  53.386  1.00 25.00           C
ATOM     45  CA  ARG    45      30.464  23.664  52.342  1.00 25.00           C
ATOM     46  CA  GLU    46      31.259  26.015  49.425  1.00 25.00           C
ATOM     47  CA  PHE    47      34.129  23.726  48.331  1.00 25.00           C
ATOM     48  CA  MET    48      31.799  20.691  48.479  1.00 25.00           C
ATOM     49  CA  ARG    49      29.199  22.555  46.372  1.00 25.00           C
ATOM     50  CA  PHE    50      31.895  23.464  43.807  1.00 25.00           C
ATOM     51  CA  GLY    51      33.020  19.806  43.655  1.00 25.00           C
ATOM     52  CA  ILE    52      29.395  18.689  43.123  1.00 25.00           C
ATOM     53  CA  LEU    53      28.991  21.256  40.309  1.00 25.00           C
ATOM     54  CA  GLN    54      32.218  20.003  38.669  1.00 25.00           C
ATOM     55  CA  ASP    55      30.963  16.392  38.902  1.00 25.00           C
ATOM     56  CA  GLN    56      27.634  17.421  37.312  1.00 25.00           C
ATOM     57  CA  VAL    57      29.506  19.196  34.482  1.00 25.00           C
ATOM     58  CA  ASP    58      31.647  16.072  33.906  1.00 25.00           C
ATOM     59  CA  LEU    59      28.492  13.903  33.785  1.00 25.00           C
ATOM     60  CA  LEU    60      26.909  16.301  31.253  1.00 25.00           C
ATOM     61  CA  LEU    61      30.075  16.159  29.103  1.00 25.00           C
ATOM     62  CA  LYS    62      30.020  12.331  29.232  1.00 25.00           C
ATOM     63  CA  ALA    63      26.335  12.324  28.189  1.00 25.00           C
ATOM     64  CA  SER    64      27.132  14.675  25.272  1.00 25.00           C
ATOM     65  CA  ASP    65      30.001  12.387  24.179  1.00 25.00           C
ATOM     66  CA  SER    66      27.670   9.352  24.325  1.00 25.00           C
ATOM     67  CA  ILE    67      25.072  11.216  22.218  1.00 25.00           C
ATOM     68  CA  GLU    68      27.767  12.125  19.653  1.00 25.00           C
ATOM     69  CA  ALA    69      28.891   8.467  19.502  1.00 25.00           C
ATOM     70  CA  SER    70      25.268   7.349  18.969  1.00 25.00           C
ATOM     71  CA  GLN    71      24.863   9.917  16.156  1.00 25.00           C
ATOM     72  CA  ALA    72      28.089   8.664  14.516  1.00 25.00           C
ATOM     73  CA  VAL    73      26.835   5.053  14.748  1.00 25.00           C
ATOM     74  CA  ALA    74      23.507   6.082  13.158  1.00 25.00           C
ATOM     75  CA  LEU    75      25.379   7.856  10.328  1.00 25.00           C
ATOM     76  CA  ILE    76      27.519   4.733   9.752  1.00 25.00           C
ATOM     77  CA  ALA    77      24.365   2.564   9.632  1.00 25.00           C
ATOM     78  CA  ARG    78      22.782   4.962   7.100  1.00 25.00           C
ATOM     79  CA  MET    79      25.948   4.819   4.950  1.00 25.00           C
ATOM     80  CA  ASP    80      25.892   0.992   5.079  1.00 25.00           C
ATOM     81  CA  GLU    81      22.208   0.985   4.035  1.00 25.00           C
ATOM     82  CA  GLU    82      23.004   3.336   1.118  1.00 25.00           C
ATOM     83  CA  ARG    83      25.874   1.048   0.025  1.00 25.00           C
ATOM     84  CA  LYS    84      23.543  -1.987   0.171  1.00 25.00           C
ATOM     85  CA  LYS    85      20.945  -0.123  -1.936  1.00 25.00           C
ATOM     86  CA  TYR    86      23.640   0.785  -4.500  1.00 25.00           C
ATOM     87  CA  VAL    87      24.764  -2.872  -4.652  1.00 25.00           C
ATOM     88  CA  ALA    88      21.139  -3.989  -5.185  1.00 25.00           C
ATOM     89  CA  SER    89      20.736  -1.422  -7.997  1.00 25.00           C
ATOM     90  CA  TYR    90      23.962  -2.675  -9.638  1.00 25.00           C
ATOM     91  CA  LEU    91      22.707  -6.287  -9.405  1.00 25.00           C
ATOM     92  CA  GLY    92      19.378  -5.258 -10.995  1.00 25.00           C
ATOM     93  CA  VAL    93      21.251  -3.483 -13.826  1.00 25.00           C
ATOM     94  CA  ILE    94      23.391  -6.607 -14.401  1.00 25.00           C
ATOM     95  CA  MET    95      20.237  -8.775 -14.521  1.00 25.00           C
ATOM     96  CA  ALA    96      18.655  -6.378 -17.053  1.00 25.00           C
ATOM     97  CA  SER    97      16.167  -5.649 -14.308  1.00 25.00           C
ATOM     98  CA  ASP    98      15.588  -5.068 -10.558  1.00 25.00           C
ATOM     99  CA  GLY    99      15.488  -4.554  -6.734  1.00 25.00           C
ATOM    100  CA  ASP   100      15.733  -4.099  -2.926  1.00 25.00           C
ATOM    101  CA  ILE   101      15.994  -3.207   0.793  1.00 25.00           C
ATOM    102  CA  ASP   102      16.528  -2.547   4.479  1.00 25.00           C
ATOM    103  CA  ASP   103      17.139  -1.627   8.125  1.00 25.00           C
ATOM    104  CA  ASN   104      18.878   1.491   9.512  1.00 25.00           C
ATOM    105  CA  GLU   105      15.723   2.405  11.480  1.00 25.00           C
ATOM    106  CA  LEU   106      15.547  -1.148  12.897  1.00 25.00           C
ATOM    107  CA  ALA   107      19.232  -0.947  13.925  1.00 25.00           C
ATOM    108  CA  LEU   108      18.595   2.419  15.638  1.00 25.00           C
ATOM    109  CA  TRP   109      15.600   0.930  17.504  1.00 25.00           C
ATOM    110  CA  THR   110      17.743  -2.036  18.630  1.00 25.00           C
ATOM    111  CA  LEU   111      20.462   0.365  19.861  1.00 25.00           C
ATOM    112  CA  ILE   112      17.842   2.380  21.795  1.00 25.00           C
ATOM    113  CA  SER   113      16.501  -0.839  23.380  1.00 25.00           C
ATOM    114  CA  THR   114      20.055  -1.854  24.383  1.00 25.00           C
ATOM    115  CA  LEU   115      20.628   1.599  25.938  1.00 25.00           C
ATOM    116  CA  CYS   116      21.507   0.613  29.531  1.00 25.00           C
ATOM    117  CA  GLY   117      22.702  -1.893  32.125  1.00 25.00           C
ATOM    118  CA  LEU   118      20.819  -0.587  35.207  1.00 25.00           C
ATOM    119  CA  PRO   119      17.771  -2.869  35.485  1.00 25.00           C
ATOM    120  CA  THR   120      15.590   0.185  36.089  1.00 25.00           C
ATOM    121  CA  MET   121      15.821   0.963  32.421  1.00 25.00           C
ATOM    122  CA  THR   122      12.100   0.378  32.444  1.00 25.00           C
ATOM    123  CA  VAL   123      10.342  -1.976  29.989  1.00 25.00           C
ATOM    124  CA  MET   124       7.569   0.612  29.455  1.00 25.00           C
ATOM    125  CA  GLU   125      10.192   3.326  28.810  1.00 25.00           C
ATOM    126  CA  ALA   126      11.956   1.054  26.280  1.00 25.00           C
ATOM    127  CA  ILE   127       8.622   0.387  24.517  1.00 25.00           C
ATOM    128  CA  ASN   128       7.919   4.150  24.372  1.00 25.00           C
ATOM    129  CA  ASN   129      11.399   4.768  22.898  1.00 25.00           C
ATOM    130  CA  MET   130      10.797   2.051  20.269  1.00 25.00           C
ATOM    131  CA  LYS   131       7.323   3.289  19.329  1.00 25.00           C
ATOM    132  CA  ASN   132       8.540   6.395  17.497  1.00 25.00           C
ATOM    133  CA  LEU   133      11.569   8.007  19.063  1.00 25.00           C
TER
END
