
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  133 (  133),  selected  133 , name T0307TS599_5
# Molecule2: number of CA atoms  132 ( 1005),  selected  132 , name T0307.pdb
# PARAMETERS: T0307TS599_5.T0307.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    -       -      M       1           -
LGA    -       -      G       2           -
LGA    -       -      L       3           -
LGA    -       -      G       4           -
LGA    -       -      R       5           -
LGA    -       -      Q       6           -
LGA    -       -      S       7           -
LGA    -       -      L       8           -
LGA    -       -      N       9           -
LGA    -       -      I      10           -
LGA    -       -      M      11           -
LGA    -       -      T      12           -
LGA    -       -      F      13           -
LGA    M       1      S      14          4.695
LGA    G       2      G      15          2.694
LGA    L       3      Q      16           -
LGA    G       4      -       -           -
LGA    R       5      -       -           -
LGA    Q       6      -       -           -
LGA    S       7      -       -           -
LGA    L       8      -       -           -
LGA    N       9      E      17           #
LGA    I      10      L      18          2.903
LGA    M      11      T      19          3.583
LGA    T      12      A      20          1.531
LGA    F      13      I      21           #
LGA    S      14      I      22           -
LGA    G      15      -       -           -
LGA    Q      16      -       -           -
LGA    E      17      K      23           #
LGA    L      18      M      24          4.150
LGA    T      19      A      25           -
LGA    -       -      K      26           -
LGA    A      20      S      27          3.015
LGA    I      21      M      28          2.093
LGA    I      22      V      29          4.260
LGA    K      23      M      30          1.055
LGA    -       -      A      31           -
LGA    M      24      D      32          4.899
LGA    A      25      -       -           -
LGA    K      26      G      33          5.545
LGA    S      27      K      34          2.368
LGA    M      28      I      35          5.087
LGA    V      29      K      36          0.776
LGA    M      30      P      37          1.139
LGA    A      31      A      38          4.780
LGA    D      32      -       -           -
LGA    G      33      -       -           -
LGA    K      34      -       -           -
LGA    I      35      E      39          3.568
LGA    K      36      I      40          3.515
LGA    P      37      A      41           -
LGA    -       -      V      42           -
LGA    -       -      M      43           -
LGA    -       -      T      44           -
LGA    -       -      R      45           -
LGA    -       -      E      46           -
LGA    -       -      F      47           -
LGA    -       -      M      48           -
LGA    -       -      R      49           -
LGA    -       -      F      50           -
LGA    -       -      G      51           -
LGA    -       -      I      52           -
LGA    -       -      L      53           -
LGA    -       -      Q      54           -
LGA    -       -      D      55           -
LGA    -       -      Q      56           -
LGA    -       -      V      57           -
LGA    -       -      D      58           -
LGA    -       -      L      59           -
LGA    -       -      L      60           -
LGA    A      38      L      61          4.752
LGA    E      39      K      62           -
LGA    -       -      A      63           -
LGA    I      40      S      64           #
LGA    -       -      D      65           -
LGA    -       -      S      66           -
LGA    -       -      I      67           -
LGA    -       -      E      68           -
LGA    -       -      A      69           -
LGA    A      41      S      70           #
LGA    -       -      Q      71           -
LGA    -       -      A      72           -
LGA    V      42      V      73          6.089
LGA    -       -      A      74           -
LGA    M      43      L      75          3.956
LGA    T      44      I      76          3.592
LGA    R      45      A      77          4.249
LGA    E      46      R      78          4.218
LGA    F      47      M      79          3.158
LGA    M      48      -       -           -
LGA    R      49      -       -           -
LGA    F      50      -       -           -
LGA    G      51      -       -           -
LGA    I      52      -       -           -
LGA    L      53      -       -           -
LGA    Q      54      D      80          0.939
LGA    D      55      E      81          1.100
LGA    Q      56      E      82          1.148
LGA    V      57      R      83          1.148
LGA    D      58      K      84          0.991
LGA    L      59      K      85          0.773
LGA    L      60      Y      86          1.086
LGA    L      61      V      87          1.283
LGA    K      62      A      88          1.306
LGA    A      63      S      89          1.410
LGA    S      64      Y      90          1.234
LGA    D      65      L      91          1.349
LGA    S      66      G      92          1.306
LGA    I      67      V      93          0.986
LGA    E      68      I      94          0.856
LGA    A      69      M      95          0.886
LGA    S      70      A      96          1.140
LGA    Q      71      S      97          2.928
LGA    A      72      -       -           -
LGA    V      73      -       -           -
LGA    A      74      D      98           #
LGA    L      75      G      99           -
LGA    I      76      D     100           -
LGA    A      77      I     101           -
LGA    R      78      D     102           -
LGA    M      79      D     103           -
LGA    D      80      N     104           -
LGA    E      81      E     105           -
LGA    E      82      L     106           -
LGA    R      83      A     107           -
LGA    K      84      L     108           -
LGA    K      85      W     109           -
LGA    Y      86      T     110           -
LGA    V      87      L     111           -
LGA    A      88      I     112           -
LGA    S      89      S     113           -
LGA    Y      90      T     114           -
LGA    L      91      L     115           -
LGA    G      92      C     116           -
LGA    V      93      G     117           -
LGA    I      94      L     118           -
LGA    M      95      P     119           -
LGA    A      96      T     120           -
LGA    S      97      M     121           -
LGA    D      98      T     122           -
LGA    G      99      V     123           -
LGA    D     100      M     124           -
LGA    I     101      E     125           -
LGA    D     102      A     126           -
LGA    D     103      I     127           -
LGA    N     104      N     128           -
LGA    E     105      N     129           -
LGA    L     106      M     130           -
LGA    A     107      K     131           -
LGA    L     108      N     132           -
LGA    W     109      -       -           -
LGA    T     110      -       -           -
LGA    L     111      -       -           -
LGA    I     112      -       -           -
LGA    S     113      -       -           -
LGA    T     114      -       -           -
LGA    L     115      -       -           -
LGA    C     116      -       -           -
LGA    G     117      -       -           -
LGA    L     118      -       -           -
LGA    P     119      -       -           -
LGA    T     120      -       -           -
LGA    M     121      -       -           -
LGA    T     122      -       -           -
LGA    V     123      -       -           -
LGA    M     124      -       -           -
LGA    E     125      -       -           -
LGA    A     126      -       -           -
LGA    I     127      -       -           -
LGA    N     128      -       -           -
LGA    N     129      -       -           -
LGA    M     130      -       -           -
LGA    K     131      -       -           -
LGA    N     132      -       -           -
LGA    L     133      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  133  132    5.0     44    3.03     6.82     21.574     1.407

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.393549 * X  +   0.916634 * Y  +   0.070009 * Z  +  23.553293
  Y_new =   0.917977 * X  +  -0.395930 * Y  +   0.023613 * Z  +  16.800106
  Z_new =   0.049363 * X  +   0.054973 * Y  +  -0.997267 * Z  +  14.705119 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   3.086524   -0.055068  [ DEG:   176.8448     -3.1552 ]
  Theta =  -0.049383   -3.092209  [ DEG:    -2.8295   -177.1705 ]
  Phi   =   1.165784   -1.975808  [ DEG:    66.7945   -113.2055 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0307TS599_5                                  
REMARK     2: T0307.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0307TS599_5.T0307.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  133  132   5.0   44   3.03    6.82  21.574
REMARK  ---------------------------------------------------------- 
MOLECULE T0307TS599_5
PFRMAT TS                                                                       
TARGET T0307                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      22.826  15.280  37.504  1.00  0.00              
ATOM      2  CA  GLY     2      21.433  15.311  40.820  1.00  0.00              
ATOM      3  CA  LEU     3      18.312  18.105  41.278  1.00  0.00              
ATOM      4  CA  GLY     4      15.667  18.983  44.381  1.00  0.00              
ATOM      5  CA  ARG     5      13.893  15.904  45.584  1.00  0.00              
ATOM      6  CA  GLN     6      10.613  16.524  43.735  1.00  0.00              
ATOM      7  CA  SER     7      12.504  17.151  40.448  1.00  0.00              
ATOM      8  CA  LEU     8      15.226  14.529  40.282  1.00  0.00              
ATOM      9  CA  ASN     9      17.109  15.250  37.120  1.00  0.00              
ATOM     10  CA  ILE    10      19.636  12.540  36.545  1.00  0.00              
ATOM     11  CA  MET    11      22.354  11.763  34.118  1.00  0.00              
ATOM     12  CA  THR    12      24.340   8.593  35.076  1.00  0.00              
ATOM     13  CA  PHE    13      27.651   8.036  33.281  1.00  0.00              
ATOM     14  CA  SER    14      29.139   4.623  34.176  1.00  0.00              
ATOM     15  CA  GLY    15      32.227   4.115  32.075  1.00  0.00              
ATOM     16  CA  GLN    16      30.794   1.553  29.676  1.00  0.00              
ATOM     17  CA  GLU    17      27.401   3.157  29.221  1.00  0.00              
ATOM     18  CA  LEU    18      28.316   6.742  28.433  1.00  0.00              
ATOM     19  CA  THR    19      30.973   5.566  25.995  1.00  0.00              
ATOM     20  CA  ALA    20      28.389   3.392  24.213  1.00  0.00              
ATOM     21  CA  ILE    21      25.996   6.322  23.947  1.00  0.00              
ATOM     22  CA  ILE    22      28.704   8.553  22.516  1.00  0.00              
ATOM     23  CA  LYS    23      29.588   5.892  19.935  1.00  0.00              
ATOM     24  CA  MET    24      25.899   5.705  18.972  1.00  0.00              
ATOM     25  CA  ALA    25      25.609   9.483  18.577  1.00  0.00              
ATOM     26  CA  LYS    26      28.703   9.610  16.400  1.00  0.00              
ATOM     27  CA  SER    27      27.627   6.789  14.012  1.00  0.00              
ATOM     28  CA  MET    28      24.242   8.578  13.559  1.00  0.00              
ATOM     29  CA  VAL    29      25.533  12.115  12.849  1.00  0.00              
ATOM     30  CA  MET    30      23.705  15.120  14.189  1.00  0.00              
ATOM     31  CA  ALA    31      23.725  18.365  12.077  1.00  0.00              
ATOM     32  CA  ASP    32      20.746  20.249  13.552  1.00  0.00              
ATOM     33  CA  GLY    33      22.126  19.773  17.108  1.00  0.00              
ATOM     34  CA  LYS    34      19.891  16.953  18.174  1.00  0.00              
ATOM     35  CA  ILE    35      22.501  14.516  19.579  1.00  0.00              
ATOM     36  CA  LYS    36      25.130  15.779  21.937  1.00  0.00              
ATOM     37  CA  PRO    37      28.324  14.045  22.844  1.00  0.00              
ATOM     38  CA  ALA    38      27.492  14.261  26.618  1.00  0.00              
ATOM     39  CA  GLU    39      24.226  12.428  26.551  1.00  0.00              
ATOM     40  CA  ILE    40      23.863  10.989  29.995  1.00  0.00              
ATOM     41  CA  ALA    41      22.889   7.487  31.290  1.00  0.00              
ATOM     42  CA  VAL    42      20.443   7.200  34.254  1.00  0.00              
ATOM     43  CA  MET    43      20.675   4.504  36.804  1.00  0.00              
ATOM     44  CA  THR    44      17.643   3.358  38.683  1.00  0.00              
ATOM     45  CA  ARG    45      19.168   3.025  42.186  1.00  0.00              
ATOM     46  CA  GLU    46      20.747   6.466  41.982  1.00  0.00              
ATOM     47  CA  PHE    47      17.514   7.973  40.692  1.00  0.00              
ATOM     48  CA  MET    48      15.387   6.312  43.385  1.00  0.00              
ATOM     49  CA  ARG    49      17.897   7.641  45.922  1.00  0.00              
ATOM     50  CA  PHE    50      17.438  11.218  44.784  1.00  0.00              
ATOM     51  CA  GLY    51      13.658  10.802  45.033  1.00  0.00              
ATOM     52  CA  ILE    52      12.481  11.481  41.500  1.00  0.00              
ATOM     53  CA  LEU    53       9.925   8.683  41.450  1.00  0.00              
ATOM     54  CA  GLN    54      11.949   5.541  41.079  1.00  0.00              
ATOM     55  CA  ASP    55       9.564   3.999  38.513  1.00  0.00              
ATOM     56  CA  GLN    56       9.256   7.474  36.886  1.00  0.00              
ATOM     57  CA  VAL    57      13.047   7.657  36.397  1.00  0.00              
ATOM     58  CA  ASP    58      14.023   4.247  35.009  1.00  0.00              
ATOM     59  CA  LEU    59      11.140   4.691  32.559  1.00  0.00              
ATOM     60  CA  LEU    60      12.192   8.169  31.438  1.00  0.00              
ATOM     61  CA  LEU    61      15.781   7.021  30.855  1.00  0.00              
ATOM     62  CA  LYS    62      14.873   3.961  28.772  1.00  0.00              
ATOM     63  CA  ALA    63      12.449   6.041  26.674  1.00  0.00              
ATOM     64  CA  SER    64      14.974   8.800  25.996  1.00  0.00              
ATOM     65  CA  ASP    65      17.448   6.455  24.296  1.00  0.00              
ATOM     66  CA  SER    66      14.751   4.981  22.000  1.00  0.00              
ATOM     67  CA  ILE    67      13.368   8.319  20.815  1.00  0.00              
ATOM     68  CA  GLU    68      16.943   9.558  20.199  1.00  0.00              
ATOM     69  CA  ALA    69      17.844   6.814  17.771  1.00  0.00              
ATOM     70  CA  SER    70      14.801   7.192  15.556  1.00  0.00              
ATOM     71  CA  GLN    71      15.103  11.009  15.331  1.00  0.00              
ATOM     72  CA  ALA    72      18.747  10.927  14.435  1.00  0.00              
ATOM     73  CA  VAL    73      18.869   8.672  11.416  1.00  0.00              
ATOM     74  CA  ALA    74      15.950  10.735   9.949  1.00  0.00              
ATOM     75  CA  LEU    75      17.639  14.064  10.634  1.00  0.00              
ATOM     76  CA  ILE    76      20.991  13.087   9.031  1.00  0.00              
ATOM     77  CA  ALA    77      19.222  11.982   5.925  1.00  0.00              
ATOM     78  CA  ARG    78      17.245  15.245   5.657  1.00  0.00              
ATOM     79  CA  MET    79      20.265  17.523   6.148  1.00  0.00              
ATOM     80  CA  ASP    80      22.206  15.618   3.481  1.00  0.00              
ATOM     81  CA  GLU    81      19.343  15.787   0.927  1.00  0.00              
ATOM     82  CA  GLU    82      18.960  19.549   1.492  1.00  0.00              
ATOM     83  CA  ARG    83      22.717  20.005   0.996  1.00  0.00              
ATOM     84  CA  LYS    84      22.619  17.954  -2.221  1.00  0.00              
ATOM     85  CA  LYS    85      19.779  20.105  -3.581  1.00  0.00              
ATOM     86  CA  TYR    86      21.595  23.378  -2.793  1.00  0.00              
ATOM     87  CA  VAL    87      24.708  21.988  -4.515  1.00  0.00              
ATOM     88  CA  ALA    88      22.964  20.863  -7.686  1.00  0.00              
ATOM     89  CA  SER    89      21.314  24.326  -8.036  1.00  0.00              
ATOM     90  CA  TYR    90      24.582  26.133  -7.430  1.00  0.00              
ATOM     91  CA  LEU    91      26.511  24.060  -9.988  1.00  0.00              
ATOM     92  CA  GLY    92      23.874  24.731 -12.635  1.00  0.00              
ATOM     93  CA  VAL    93      24.349  28.498 -12.015  1.00  0.00              
ATOM     94  CA  ILE    94      28.052  28.767 -11.639  1.00  0.00              
ATOM     95  CA  MET    95      29.259  31.501  -9.233  1.00  0.00              
ATOM     96  CA  ALA    96      32.832  32.643  -9.126  1.00  0.00              
ATOM     97  CA  SER    97      33.698  36.030  -7.581  1.00  0.00              
ATOM     98  CA  ASP    98      34.755  38.103 -10.607  1.00  0.00              
ATOM     99  CA  GLY    99      31.681  37.145 -12.623  1.00  0.00              
ATOM    100  CA  ASP   100      33.438  35.264 -15.446  1.00  0.00              
ATOM    101  CA  ILE   101      31.756  31.927 -15.180  1.00  0.00              
ATOM    102  CA  ASP   102      29.922  30.371 -18.048  1.00  0.00              
ATOM    103  CA  ASP   103      26.305  29.518 -17.359  1.00  0.00              
ATOM    104  CA  ASN   104      26.930  25.786 -16.675  1.00  0.00              
ATOM    105  CA  GLU   105      30.103  26.128 -14.685  1.00  0.00              
ATOM    106  CA  LEU   106      32.057  27.391 -11.865  1.00  0.00              
ATOM    107  CA  ALA   107      31.207  27.802  -8.221  1.00  0.00              
ATOM    108  CA  LEU   108      33.708  29.668  -6.031  1.00  0.00              
ATOM    109  CA  TRP   109      32.988  28.413  -2.500  1.00  0.00              
ATOM    110  CA  THR   110      32.538  24.897  -3.996  1.00  0.00              
ATOM    111  CA  LEU   111      36.026  24.947  -5.411  1.00  0.00              
ATOM    112  CA  ILE   112      37.517  26.199  -2.121  1.00  0.00              
ATOM    113  CA  SER   113      35.557  23.646  -0.036  1.00  0.00              
ATOM    114  CA  THR   114      36.819  20.809  -2.171  1.00  0.00              
ATOM    115  CA  LEU   115      40.423  21.928  -1.893  1.00  0.00              
ATOM    116  CA  CYS   116      40.146  22.631   1.866  1.00  0.00              
ATOM    117  CA  GLY   117      38.092  19.631   2.794  1.00  0.00              
ATOM    118  CA  LEU   118      34.978  21.688   3.725  1.00  0.00              
ATOM    119  CA  PRO   119      31.677  20.029   3.074  1.00  0.00              
ATOM    120  CA  THR   120      30.008  21.220  -0.164  1.00  0.00              
ATOM    121  CA  MET   121      26.623  21.974   1.327  1.00  0.00              
ATOM    122  CA  THR   122      28.044  24.229   4.097  1.00  0.00              
ATOM    123  CA  VAL   123      30.068  26.177   1.539  1.00  0.00              
ATOM    124  CA  MET   124      27.159  26.551  -0.938  1.00  0.00              
ATOM    125  CA  GLU   125      24.893  27.899   1.837  1.00  0.00              
ATOM    126  CA  ALA   126      27.605  30.352   2.799  1.00  0.00              
ATOM    127  CA  ILE   127      27.998  31.525  -0.820  1.00  0.00              
ATOM    128  CA  ASN   128      24.233  32.034  -1.152  1.00  0.00              
ATOM    129  CA  ASN   129      24.076  34.000   2.031  1.00  0.00              
ATOM    130  CA  MET   130      26.896  36.402   0.979  1.00  0.00              
ATOM    131  CA  LYS   131      24.777  36.928  -2.639  1.00  0.00              
ATOM    132  CA  ASN   132      26.658  38.063   0.187  1.00  0.00              
ATOM    133  CA  LEU   133      28.827  38.257   3.039  1.00  0.00              
TER                                                                             
END
