
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   41 (  193),  selected   41 , name T0316TS102_1-D2
# Molecule2: number of CA atoms   60 (  457),  selected   60 , name T0316_D2.pdb
# PARAMETERS: T0316TS102_1-D2.T0316_D2.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    G     227      -       -           -
LGA    R     228      -       -           -
LGA    D     229      G     220          4.044
LGA    M     230      R     221          2.822
LGA    G     231      M     222          2.484
LGA    E     232      M     223          3.009
LGA    H     233      T     224          0.287
LGA    A     234      V     225           #
LGA    -       -      D     226           -
LGA    -       -      G     227           -
LGA    -       -      R     228           -
LGA    G     235      D     229          2.051
LGA    L     236      M     230          2.751
LGA    M     237      G     231          3.919
LGA    -       -      E     232           -
LGA    Y     238      H     233          0.901
LGA    Y     239      A     234          1.974
LGA    T     240      G     235          2.211
LGA    -       -      L     236           -
LGA    I     241      M     237           #
LGA    G     242      -       -           -
LGA    Q     243      -       -           -
LGA    R     244      Y     238          4.868
LGA    -       -      Y     239           -
LGA    -       -      T     240           -
LGA    -       -      I     241           -
LGA    -       -      G     242           -
LGA    -       -      Q     243           -
LGA    -       -      R     244           -
LGA    G     245      G     245          5.038
LGA    G     246      G     246          3.799
LGA    L     247      -       -           -
LGA    G     248      -       -           -
LGA    I     249      -       -           -
LGA    G     250      L     247           #
LGA    G     251      G     248          5.380
LGA    Q     252      I     249          3.876
LGA    -       -      G     250           -
LGA    -       -      G     251           -
LGA    -       -      D     256           -
LGA    -       -      N     257           -
LGA    -       -      A     258           -
LGA    -       -      P     259           -
LGA    H     253      W     260          3.218
LGA    G     254      F     261          2.342
LGA    G     255      V     262           #
LGA    D     256      V     263          2.813
LGA    -       -      G     264           -
LGA    F     261      K     265          4.244
LGA    V     262      D     266          3.193
LGA    V     263      L     267          3.125
LGA    G     264      S     268          4.768
LGA    K     265      K     269          3.034
LGA    D     266      -       -           -
LGA    N     270      N     270          5.117
LGA    H     280      I     271           -
LGA    D     281      L     272           -
LGA    S     282      Y     273           -
LGA    L     283      V     274           -
LGA    -       -      G     275           -
LGA    -       -      Q     276           -
LGA    -       -      G     277           -
LGA    -       -      F     278           -
LGA    -       -      Y     279           -
LGA    -       -      H     280           -
LGA    -       -      D     281           -
LGA    -       -      S     282           -
LGA    -       -      L     283           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   41   60    5.0     25    3.49    20.00     24.075     0.697

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.821623 * X  +   0.241826 * Y  +  -0.516193 * Z  +  32.887356
  Y_new =  -0.552047 * X  +   0.111898 * Y  +  -0.826271 * Z  +  41.459499
  Z_new =  -0.142053 * X  +   0.963846 * Y  +   0.225437 * Z  + -30.761177 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.341033   -1.800559  [ DEG:    76.8355   -103.1645 ]
  Theta =   0.142535    2.999058  [ DEG:     8.1667    171.8333 ]
  Phi   =  -0.591615    2.549977  [ DEG:   -33.8971    146.1029 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0316TS102_1-D2                               
REMARK     2: T0316_D2.pdb                                  
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0316TS102_1-D2.T0316_D2.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   41   60   5.0   25   3.49   20.00  24.075
REMARK  ---------------------------------------------------------- 
MOLECULE T0316TS102_1-D2
PFRMAT TS
TARGET T0316
MODEL 1
PARENT 1zin__
ATOM    596  N   GLY   227      47.635  21.923 -14.521  1.00  1.00
ATOM    597  CA  GLY   227      46.388  22.671 -14.449  1.00  1.00
ATOM    598  C   GLY   227      45.592  22.680 -15.743  1.00  1.00
ATOM    599  O   GLY   227      44.510  23.263 -15.803  1.00  1.00
ATOM    600  N   ARG   228      46.105  22.017 -16.780  1.00  1.00
ATOM    601  CA  ARG   228      45.407  21.973 -18.060  1.00  1.00
ATOM    602  C   ARG   228      44.163  21.102 -17.951  1.00  1.00
ATOM    603  O   ARG   228      44.219  20.051 -17.318  1.00  1.00
ATOM    604  CB  ARG   228      46.319  21.386 -19.149  1.00  1.00
ATOM    605  N   ASP   229      43.044  21.573 -18.508  1.00  1.00
ATOM    606  CA  ASP   229      41.784  20.806 -18.549  1.00  1.00
ATOM    607  C   ASP   229      41.277  20.874 -19.992  1.00  1.00
ATOM    608  O   ASP   229      41.324  21.930 -20.620  1.00  1.00
ATOM    609  CB  ASP   229      40.727  21.340 -17.574  1.00  1.00
ATOM    610  N   MET   230      40.826  19.743 -20.525  1.00  1.00
ATOM    611  CA  MET   230      40.374  19.686 -21.917  1.00  1.00
ATOM    612  C   MET   230      38.924  19.224 -21.971  1.00  1.00
ATOM    613  O   MET   230      38.509  18.427 -21.138  1.00  1.00
ATOM    614  CB  MET   230      41.262  18.688 -22.699  1.00  1.00
ATOM    615  N   GLY   231      38.154  19.740 -22.935  1.00  1.00
ATOM    616  CA  GLY   231      36.755  19.335 -23.069  1.00  1.00
ATOM    617  C   GLY   231      36.666  17.946 -23.735  1.00  1.00
ATOM    618  O   GLY   231      37.224  17.719 -24.820  1.00  1.00
ATOM    619  N   GLU   232      35.973  17.021 -23.069  1.00  1.00
ATOM    620  CA  GLU   232      35.834  15.669 -23.603  1.00  1.00
ATOM    621  C   GLU   232      34.989  15.645 -24.874  1.00  1.00
ATOM    622  O   GLU   232      35.148  14.764 -25.713  1.00  1.00
ATOM    623  CB  GLU   232      35.255  14.703 -22.558  1.00  1.00
ATOM    624  N   HIS   233      34.124  16.646 -25.026  1.00  1.00
ATOM    625  CA  HIS   233      33.262  16.731 -26.198  1.00  1.00
ATOM    626  C   HIS   233      33.860  17.376 -27.424  1.00  1.00
ATOM    627  O   HIS   233      33.855  16.781 -28.493  1.00  1.00
ATOM    628  CB  HIS   233      31.967  17.471 -25.867  1.00  1.00
ATOM    629  N   ALA   234      34.356  18.609 -27.274  1.00  1.00
ATOM    630  CA  ALA   234      34.881  19.356 -28.415  1.00  1.00
ATOM    631  C   ALA   234      36.392  19.567 -28.443  1.00  1.00
ATOM    632  O   ALA   234      36.921  20.170 -29.394  1.00  1.00
ATOM    633  CB  ALA   234      34.166  20.705 -28.508  1.00  1.00
ATOM    634  N   GLY   235      37.078  19.123 -27.393  1.00  1.00
ATOM    635  CA  GLY   235      38.523  19.272 -27.333  1.00  1.00
ATOM    636  C   GLY   235      39.044  20.650 -26.969  1.00  1.00
ATOM    637  O   GLY   235      40.257  20.869 -27.023  1.00  1.00
ATOM    638  N   LEU   236      38.171  21.588 -26.617  1.00  1.00
ATOM    639  CA  LEU   236      38.639  22.934 -26.224  1.00  1.00
ATOM    640  C   LEU   236      39.548  22.804 -25.002  1.00  1.00
ATOM    641  O   LEU   236      39.317  21.967 -24.127  1.00  1.00
ATOM    642  CB  LEU   236      37.472  23.853 -25.909  1.00  1.00
ATOM    643  N   MET   237      40.579  23.639 -24.952  1.00  1.00
ATOM    644  CA  MET   237      41.555  23.607 -23.869  1.00  1.00
ATOM    645  C   MET   237      41.457  24.808 -22.937  1.00  1.00
ATOM    646  O   MET   237      41.303  25.944 -23.375  1.00  1.00
ATOM    647  CB  MET   237      42.992  23.516 -24.455  1.00  1.00
ATOM    648  N   TYR   238      41.529  24.526 -21.644  1.00  1.00
ATOM    649  CA  TYR   238      41.478  25.554 -20.617  1.00  1.00
ATOM    650  C   TYR   238      42.624  25.322 -19.653  1.00  1.00
ATOM    651  O   TYR   238      43.391  24.349 -19.760  1.00  1.00
ATOM    652  CB  TYR   238      40.168  25.489 -19.838  1.00  1.00
ATOM    653  N   TYR   239      42.738  26.230 -18.705  1.00  1.00
ATOM    654  CA  TYR   239      43.751  26.109 -17.688  1.00  1.00
ATOM    655  C   TYR   239      43.166  26.671 -16.401  1.00  1.00
ATOM    656  O   TYR   239      42.706  27.818 -16.363  1.00  1.00
ATOM    657  CB  TYR   239      45.045  26.833 -18.072  1.00  1.00
ATOM    658  N   THR   240      43.168  25.848 -15.357  1.00  1.00
ATOM    659  CA  THR   240      42.590  26.228 -14.075  1.00  1.00
ATOM    660  C   THR   240      43.169  27.485 -13.442  1.00  1.00
ATOM    661  O   THR   240      42.470  28.199 -12.727  1.00  1.00
ATOM    662  CB  THR   240      42.677  25.060 -13.094  1.00  1.00
ATOM    663  N   ILE   241      44.445  27.745 -13.709  1.00  1.00
ATOM    664  CA  ILE   241      45.133  28.910 -13.159  1.00  1.00
ATOM    665  C   ILE   241      45.157  30.073 -14.161  1.00  1.00
ATOM    666  O   ILE   241      44.657  31.157 -13.878  1.00  1.00
ATOM    667  CB  ILE   241      46.614  28.546 -12.771  1.00  1.00
ATOM    668  N   GLY   242      45.677  29.804 -15.353  1.00  1.00
ATOM    669  CA  GLY   242      45.842  30.824 -16.377  1.00  1.00
ATOM    670  C   GLY   242      44.670  31.254 -17.245  1.00  1.00
ATOM    671  O   GLY   242      44.666  32.378 -17.740  1.00  1.00
ATOM    672  N   GLN   243      43.721  30.355 -17.493  1.00  1.00
ATOM    673  CA  GLN   243      42.525  30.687 -18.276  1.00  1.00
ATOM    674  C   GLN   243      41.416  29.666 -18.040  1.00  1.00
ATOM    675  O   GLN   243      41.153  28.771 -18.858  1.00  1.00
ATOM    676  CB  GLN   243      42.822  30.898 -19.764  1.00  1.00
ATOM    677  N   ARG   244      40.732  29.814 -16.905  1.00  1.00
ATOM    678  CA  ARG   244      39.646  28.952 -16.465  1.00  1.00
ATOM    679  C   ARG   244      38.350  29.133 -17.238  1.00  1.00
ATOM    680  O   ARG   244      38.155  30.136 -17.913  1.00  1.00
ATOM    681  CB  ARG   244      39.469  29.367 -15.013  1.00  1.00
ATOM    682  N   GLY   245      34.194  29.581 -17.558  1.00  1.00
ATOM    683  CA  GLY   245      33.303  30.454 -16.800  1.00  1.00
ATOM    684  C   GLY   245      32.768  29.750 -15.551  1.00  1.00
ATOM    685  O   GLY   245      32.689  30.335 -14.461  1.00  1.00
ATOM    686  N   GLY   246      32.373  28.489 -15.734  1.00  1.00
ATOM    687  CA  GLY   246      31.857  27.637 -14.661  1.00  1.00
ATOM    688  C   GLY   246      32.793  26.453 -14.545  1.00  1.00
ATOM    689  O   GLY   246      33.166  25.852 -15.548  1.00  1.00
ATOM    690  N   LEU   247      33.164  26.086 -13.314  1.00  1.00
ATOM    691  CA  LEU   247      34.074  24.960 -13.060  1.00  1.00
ATOM    692  C   LEU   247      33.599  23.624 -13.662  1.00  1.00
ATOM    693  O   LEU   247      32.427  23.287 -13.598  1.00  1.00
ATOM    694  CB  LEU   247      34.102  24.886 -11.527  1.00  1.00
ATOM    695  N   GLY   248      34.524  22.910 -14.292  1.00  1.00
ATOM    696  CA  GLY   248      34.262  21.608 -14.878  1.00  1.00
ATOM    697  C   GLY   248      33.419  21.554 -16.132  1.00  1.00
ATOM    698  O   GLY   248      33.223  20.460 -16.672  1.00  1.00
ATOM    699  N   ILE   249      32.969  22.712 -16.616  1.00  1.00
ATOM    700  CA  ILE   249      32.107  22.794 -17.800  1.00  1.00
ATOM    701  C   ILE   249      32.756  23.603 -18.925  1.00  1.00
ATOM    702  O   ILE   249      33.286  24.678 -18.692  1.00  1.00
ATOM    703  CB  ILE   249      30.740  23.478 -17.444  1.00  1.00
ATOM    704  N   GLY   250      32.673  23.088 -20.146  1.00  1.00
ATOM    705  CA  GLY   250      33.238  23.758 -21.320  1.00  1.00
ATOM    706  C   GLY   250      32.351  24.934 -21.763  1.00  1.00
ATOM    707  O   GLY   250      31.136  24.766 -21.984  1.00  1.00
ATOM    708  N   GLY   251      32.961  26.114 -21.902  1.00  1.00
ATOM    709  CA  GLY   251      32.234  27.325 -22.314  1.00  1.00
ATOM    710  C   GLY   251      31.602  27.186 -23.693  1.00  1.00
ATOM    711  O   GLY   251      30.556  27.778 -23.958  1.00  1.00
ATOM    712  N   GLN   252      32.305  26.477 -24.584  1.00  1.00
ATOM    713  CA  GLN   252      31.877  26.283 -25.967  1.00  1.00
ATOM    714  C   GLN   252      30.680  25.376 -26.198  1.00  1.00
ATOM    715  O   GLN   252      29.744  25.737 -26.903  1.00  1.00
ATOM    716  CB  GLN   252      33.022  25.742 -26.814  1.00  1.00
ATOM    717  N   HIS   253      30.694  24.208 -25.564  1.00  1.00
ATOM    718  CA  HIS   253      29.637  23.246 -25.802  1.00  1.00
ATOM    719  C   HIS   253      28.900  22.704 -24.581  1.00  1.00
ATOM    720  O   HIS   253      27.929  21.969 -24.744  1.00  1.00
ATOM    721  CB  HIS   253      30.224  22.076 -26.594  1.00  1.00
ATOM    722  N   GLY   254      29.351  23.066 -23.382  1.00  1.00
ATOM    723  CA  GLY   254      28.731  22.582 -22.163  1.00  1.00
ATOM    724  C   GLY   254      29.290  21.225 -21.752  1.00  1.00
ATOM    725  O   GLY   254      28.871  20.662 -20.738  1.00  1.00
ATOM    726  N   GLY   255      30.251  20.713 -22.523  1.00  1.00
ATOM    727  CA  GLY   255      30.861  19.421 -22.230  1.00  1.00
ATOM    728  C   GLY   255      31.677  19.328 -20.946  1.00  1.00
ATOM    729  O   GLY   255      32.028  20.332 -20.323  1.00  1.00
ATOM    730  N   ASP   256      31.984  18.097 -20.548  1.00  1.00
ATOM    731  CA  ASP   256      32.751  17.826 -19.335  1.00  1.00
ATOM    732  C   ASP   256      34.243  18.067 -19.552  1.00  1.00
ATOM    733  O   ASP   256      34.811  17.606 -20.552  1.00  1.00
ATOM    734  CB  ASP   256      32.557  16.341 -18.933  1.00  1.00
ATOM    735  N   PHE   261      34.880  18.777 -18.623  1.00  1.00
ATOM    736  CA  PHE   261      36.326  18.988 -18.717  1.00  1.00
ATOM    737  C   PHE   261      37.032  17.869 -17.935  1.00  1.00
ATOM    738  O   PHE   261      36.525  17.412 -16.913  1.00  1.00
ATOM    739  CB  PHE   261      36.734  20.352 -18.122  1.00  1.00
ATOM    740  N   VAL   262      38.176  17.407 -18.427  1.00  1.00
ATOM    741  CA  VAL   262      38.928  16.375 -17.712  1.00  1.00
ATOM    742  C   VAL   262      40.410  16.648 -17.873  1.00  1.00
ATOM    743  O   VAL   262      40.819  17.474 -18.690  1.00  1.00
ATOM    744  CB  VAL   262      38.594  14.958 -18.228  1.00  1.00
ATOM    745  N   VAL   263      41.207  15.946 -17.087  1.00  1.00
ATOM    746  CA  VAL   263      42.658  16.080 -17.133  1.00  1.00
ATOM    747  C   VAL   263      43.244  14.939 -17.978  1.00  1.00
ATOM    748  O   VAL   263      42.913  13.769 -17.752  1.00  1.00
ATOM    749  CB  VAL   263      43.227  16.025 -15.706  1.00  1.00
ATOM    750  N   GLY   264      44.075  15.282 -18.966  1.00  1.00
ATOM    751  CA  GLY   264      44.734  14.280 -19.823  1.00  1.00
ATOM    752  C   GLY   264      45.477  13.259 -18.924  1.00  1.00
ATOM    753  O   GLY   264      46.002  13.616 -17.860  1.00  1.00
ATOM    754  N   LYS   265      45.487  11.993 -19.344  1.00  1.00
ATOM    755  CA  LYS   265      46.101  10.912 -18.566  1.00  1.00
ATOM    756  C   LYS   265      47.545  11.145 -18.179  1.00  1.00
ATOM    757  O   LYS   265      47.972  10.721 -17.107  1.00  1.00
ATOM    758  CB  LYS   265      45.976   9.588 -19.308  1.00  1.00
ATOM    759  N   ASP   266      48.290  11.822 -19.050  1.00  1.00
ATOM    760  CA  ASP   266      49.698  12.095 -18.800  1.00  1.00
ATOM    761  C   ASP   266      49.992  13.443 -18.119  1.00  1.00
ATOM    762  O   ASP   266      51.162  13.780 -17.911  1.00  1.00
ATOM    763  CB  ASP   266      50.517  11.938 -20.100  1.00  1.00
ATOM    764  N   ASN   270      48.948  14.208 -17.774  1.00  1.00
ATOM    765  CA  ASN   270      49.148  15.512 -17.126  1.00  1.00
ATOM    766  C   ASN   270      49.220  15.513 -15.595  1.00  1.00
ATOM    767  O   ASN   270      49.252  16.583 -14.975  1.00  1.00
ATOM    768  CB  ASN   270      48.114  16.537 -17.598  1.00  1.00
ATOM    769  N   HIS   280      49.195  14.332 -14.976  1.00  1.00
ATOM    770  CA  HIS   280      49.304  14.258 -13.511  1.00  1.00
ATOM    771  C   HIS   280      50.765  14.564 -13.155  1.00  1.00
ATOM    772  O   HIS   280      51.684  14.289 -13.948  1.00  1.00
ATOM    773  CB  HIS   280      48.876  12.877 -12.994  1.00  1.00
ATOM    774  N   ASP   281      50.979  15.119 -11.967  1.00  1.00
ATOM    775  CA  ASP   281      52.310  15.518 -11.549  1.00  1.00
ATOM    776  C   ASP   281      53.448  14.524 -11.751  1.00  1.00
ATOM    777  O   ASP   281      54.509  14.892 -12.237  1.00  1.00
ATOM    778  CB  ASP   281      52.302  15.999 -10.099  1.00  1.00
ATOM    779  N   SER   282      53.237  13.268 -11.392  1.00  1.00
ATOM    780  CA  SER   282      54.299  12.271 -11.519  1.00  1.00
ATOM    781  C   SER   282      54.714  12.011 -12.959  1.00  1.00
ATOM    782  O   SER   282      55.906  11.873 -13.261  1.00  1.00
ATOM    783  CB  SER   282      53.870  10.952 -10.844  1.00  1.00
ATOM    784  N   LEU   283      53.722  11.906 -13.830  1.00  1.00
ATOM    785  CA  LEU   283      53.981  11.653 -15.248  1.00  1.00
ATOM    786  C   LEU   283      54.631  12.878 -15.880  1.00  1.00
ATOM    787  O   LEU   283      55.554  12.742 -16.682  1.00  1.00
ATOM    788  CB  LEU   283      52.702  11.285 -16.004  1.00  1.00
TER
END
