
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  104 (  104),  selected  104 , name T0343TS599_2
# Molecule2: number of CA atoms   94 (  282),  selected   94 , name T0343.pdb
# PARAMETERS: T0343TS599_2.T0343.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      -       -           -
LGA    T       2      -       -           -
LGA    W       3      -       -           -
LGA    R       4      -       -           -
LGA    E       5      -       -           -
LGA    I       6      -       -           -
LGA    L       7      -       -           -
LGA    R       8      -       -           -
LGA    K       9      -       -           -
LGA    E      10      -       -           -
LGA    G      11      -       -           -
LGA    F      12      -       -           -
LGA    L      13      -       -           -
LGA    D      14      -       -           -
LGA    L      15      -       -           -
LGA    G      16      -       -           -
LGA    E      17      T       2          1.431
LGA    F      18      W       3          1.762
LGA    I      19      R       4          1.786
LGA    V      20      E       5          2.122
LGA    E      21      I       6          1.895
LGA    L      22      L       7          1.693
LGA    V      23      R       8          1.582
LGA    Y      24      K       9           -
LGA    I      25      -       -           -
LGA    D      26      -       -           -
LGA    C      27      -       -           -
LGA    P      28      -       -           -
LGA    C      29      -       -           -
LGA    E      30      -       -           -
LGA    P      31      -       -           -
LGA    I      32      -       -           -
LGA    P      33      -       -           -
LGA    P      34      -       -           -
LGA    T      35      -       -           -
LGA    L      36      -       -           -
LGA    A      37      E      10          4.293
LGA    I      38      G      11          4.193
LGA    Y      39      F      12          2.349
LGA    D      40      L      13          4.313
LGA    -       -      D      14           -
LGA    K      41      L      15          2.965
LGA    -       -      G      16           -
LGA    K      42      E      17           #
LGA    G      43      F      18          2.410
LGA    D      44      I      19          2.202
LGA    E      45      V      20          4.878
LGA    W      46      E      21          4.018
LGA    Y      47      L      22          3.880
LGA    K      48      V      23          4.378
LGA    V      49      Y      24          2.028
LGA    E      50      I      25          3.864
LGA    E      51      D      26          1.861
LGA    A      52      C      27          3.114
LGA    -       -      P      28           -
LGA    -       -      C      29           -
LGA    -       -      E      30           -
LGA    P      53      P      31          2.555
LGA    N      54      I      32          2.946
LGA    V      55      P      33          3.579
LGA    Q      56      -       -           -
LGA    N      57      -       -           -
LGA    Y      58      P      34          3.301
LGA    R      59      T      35           #
LGA    E      60      -       -           -
LGA    A      61      L      36          3.054
LGA    V      62      A      37           -
LGA    -       -      I      38           -
LGA    -       -      Y      39           -
LGA    -       -      D      40           -
LGA    -       -      K      41           -
LGA    -       -      K      42           -
LGA    -       -      G      43           -
LGA    -       -      D      44           -
LGA    -       -      E      45           -
LGA    -       -      W      46           -
LGA    -       -      Y      47           -
LGA    -       -      K      48           -
LGA    E      63      V      49          4.270
LGA    W      64      E      50           #
LGA    -       -      E      51           -
LGA    -       -      A      52           -
LGA    -       -      P      53           -
LGA    -       -      N      54           -
LGA    -       -      V      55           -
LGA    -       -      Q      56           -
LGA    -       -      E      63           -
LGA    -       -      W      64           -
LGA    -       -      A      65           -
LGA    -       -      I      66           -
LGA    -       -      E      67           -
LGA    -       -      V      68           -
LGA    -       -      L      69           -
LGA    -       -      E      70           -
LGA    -       -      R      71           -
LGA    A      65      I      72          1.985
LGA    I      66      R      73          5.629
LGA    E      67      D      74           #
LGA    V      68      G      75          4.541
LGA    L      69      E      76          2.149
LGA    -       -      N      77           -
LGA    E      70      V      78          3.078
LGA    -       -      K      79           -
LGA    -       -      L      80           -
LGA    -       -      V      81           -
LGA    -       -      S      82           -
LGA    -       -      L      83           -
LGA    -       -      D      84           -
LGA    -       -      G      85           -
LGA    -       -      P      86           -
LGA    -       -      A      87           -
LGA    -       -      P      88           -
LGA    -       -      P      89           -
LGA    -       -      K      90           -
LGA    -       -      V      91           -
LGA    -       -      M      92           -
LGA    -       -      K      93           -
LGA    -       -      R      94           -
LGA    -       -      L      95           -
LGA    R      71      S      96          1.545
LGA    -       -      L      97           -
LGA    -       -      A      98           -
LGA    I      72      L      99          5.119
LGA    R      73      Q     100           #
LGA    D      74      -       -           -
LGA    G      75      -       -           -
LGA    E      76      -       -           -
LGA    N      77      -       -           -
LGA    V      78      K     101          1.083
LGA    K      79      -       -           -
LGA    L      80      -       -           -
LGA    V      81      -       -           -
LGA    S      82      -       -           -
LGA    L      83      -       -           -
LGA    D      84      -       -           -
LGA    G      85      -       -           -
LGA    P      86      -       -           -
LGA    A      87      -       -           -
LGA    P      88      -       -           -
LGA    P      89      -       -           -
LGA    K      90      -       -           -
LGA    V      91      -       -           -
LGA    M      92      -       -           -
LGA    K      93      -       -           -
LGA    R      94      -       -           -
LGA    L      95      -       -           -
LGA    S      96      -       -           -
LGA    L      97      -       -           -
LGA    A      98      -       -           -
LGA    L      99      -       -           -
LGA    Q     100      -       -           -
LGA    K     101      -       -           -
LGA    L     102      -       -           -
LGA    T     103      -       -           -
LGA    E     104      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  104   94    5.0     36    3.22     5.56     22.762     1.083

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.626141 * X  +   0.142902 * Y  +  -0.766503 * Z  +  17.823511
  Y_new =  -0.003218 * X  +  -0.982580 * Y  +  -0.185814 * Z  +  19.949150
  Z_new =  -0.779703 * X  +   0.118812 * Y  +  -0.614774 * Z  +  20.497164 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.950684   -0.190908  [ DEG:   169.0618    -10.9383 ]
  Theta =   0.894192    2.247401  [ DEG:    51.2334    128.7666 ]
  Phi   =  -0.005139    3.136453  [ DEG:    -0.2945    179.7056 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0343TS599_2                                  
REMARK     2: T0343.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0343TS599_2.T0343.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  104   94   5.0   36   3.22    5.56  22.762
REMARK  ---------------------------------------------------------- 
MOLECULE T0343TS599_2
PFRMAT TS                                                                       
TARGET T0343                                                                    
MODEL  2                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1       8.813  11.517  37.431  1.00  0.00              
ATOM      2  CA  THR     2      10.257  12.285  33.573  1.00  0.00              
ATOM      3  CA  TRP     3      12.335  11.684  30.691  1.00  0.00              
ATOM      4  CA  ARG     4      15.835  12.491  32.727  1.00  0.00              
ATOM      5  CA  GLU     5      14.750   9.894  35.208  1.00  0.00              
ATOM      6  CA  ILE     6      14.002   7.296  32.571  1.00  0.00              
ATOM      7  CA  LEU     7      17.405   7.866  30.870  1.00  0.00              
ATOM      8  CA  ARG     8      19.201   7.563  34.239  1.00  0.00              
ATOM      9  CA  LYS     9      17.394   4.318  35.144  1.00  0.00              
ATOM     10  CA  GLU    10      18.268   2.807  31.724  1.00  0.00              
ATOM     11  CA  GLY    11      21.946   3.730  31.975  1.00  0.00              
ATOM     12  CA  PHE    12      22.177   6.233  29.123  1.00  0.00              
ATOM     13  CA  LEU    13      23.355   9.448  30.607  1.00  0.00              
ATOM     14  CA  ASP    14      25.069  12.181  28.668  1.00  0.00              
ATOM     15  CA  LEU    15      23.307  15.540  29.008  1.00  0.00              
ATOM     16  CA  GLY    16      26.039  17.963  30.096  1.00  0.00              
ATOM     17  CA  GLU    17      28.490  16.516  27.675  1.00  0.00              
ATOM     18  CA  PHE    18      26.307  16.708  24.640  1.00  0.00              
ATOM     19  CA  ILE    19      24.867  20.151  25.356  1.00  0.00              
ATOM     20  CA  VAL    20      27.788  22.222  26.457  1.00  0.00              
ATOM     21  CA  GLU    21      29.935  20.685  23.719  1.00  0.00              
ATOM     22  CA  LEU    22      27.377  21.283  21.021  1.00  0.00              
ATOM     23  CA  VAL    23      25.521  24.533  21.405  1.00  0.00              
ATOM     24  CA  TYR    24      22.067  24.866  19.999  1.00  0.00              
ATOM     25  CA  ILE    25      20.624  28.371  19.523  1.00  0.00              
ATOM     26  CA  ASP    26      16.946  28.840  18.896  1.00  0.00              
ATOM     27  CA  CYS    27      16.786  32.021  16.902  1.00  0.00              
ATOM     28  CA  PRO    28      13.681  33.764  15.662  1.00  0.00              
ATOM     29  CA  CYS    29      14.159  34.367  11.889  1.00  0.00              
ATOM     30  CA  GLU    30      14.486  38.164  12.004  1.00  0.00              
ATOM     31  CA  PRO    31      16.863  38.560  14.957  1.00  0.00              
ATOM     32  CA  ILE    32      19.673  36.242  13.933  1.00  0.00              
ATOM     33  CA  PRO    33      21.701  34.825  16.694  1.00  0.00              
ATOM     34  CA  PRO    34      25.092  36.473  17.332  1.00  0.00              
ATOM     35  CA  THR    35      27.104  33.199  17.124  1.00  0.00              
ATOM     36  CA  LEU    36      25.003  30.229  16.990  1.00  0.00              
ATOM     37  CA  ALA    37      26.520  26.729  17.091  1.00  0.00              
ATOM     38  CA  ILE    38      24.518  23.879  15.818  1.00  0.00              
ATOM     39  CA  TYR    39      25.711  20.303  16.392  1.00  0.00              
ATOM     40  CA  ASP    40      23.695  17.414  15.111  1.00  0.00              
ATOM     41  CA  LYS    41      23.596  14.336  17.246  1.00  0.00              
ATOM     42  CA  LYS    42      23.125  11.891  14.440  1.00  0.00              
ATOM     43  CA  GLY    43      25.711  13.034  11.973  1.00  0.00              
ATOM     44  CA  ASP    44      28.227  14.658  14.260  1.00  0.00              
ATOM     45  CA  GLU    45      28.570  17.684  12.036  1.00  0.00              
ATOM     46  CA  TRP    46      29.142  21.073  13.447  1.00  0.00              
ATOM     47  CA  TYR    47      27.294  23.952  11.915  1.00  0.00              
ATOM     48  CA  LYS    48      28.235  27.519  12.641  1.00  0.00              
ATOM     49  CA  VAL    49      25.719  30.121  12.190  1.00  0.00              
ATOM     50  CA  GLU    50      26.852  33.495  12.346  1.00  0.00              
ATOM     51  CA  GLU    51      24.548  36.403  11.783  1.00  0.00              
ATOM     52  CA  ALA    52      23.658  36.082   8.152  1.00  0.00              
ATOM     53  CA  PRO    53      19.916  35.777   8.177  1.00  0.00              
ATOM     54  CA  ASN    54      18.676  33.087   5.895  1.00  0.00              
ATOM     55  CA  VAL    55      15.243  31.717   6.786  1.00  0.00              
ATOM     56  CA  GLN    56      15.916  28.183   5.513  1.00  0.00              
ATOM     57  CA  ASN    57      18.974  27.982   7.773  1.00  0.00              
ATOM     58  CA  TYR    58      16.725  28.626  10.820  1.00  0.00              
ATOM     59  CA  ARG    59      14.238  25.946   9.727  1.00  0.00              
ATOM     60  CA  GLU    60      17.123  23.510   9.257  1.00  0.00              
ATOM     61  CA  ALA    61      18.215  23.964  12.885  1.00  0.00              
ATOM     62  CA  VAL    62      14.678  23.135  14.036  1.00  0.00              
ATOM     63  CA  GLU    63      14.373  19.977  11.928  1.00  0.00              
ATOM     64  CA  TRP    64      17.677  18.612  13.358  1.00  0.00              
ATOM     65  CA  ALA    65      16.431  19.389  16.918  1.00  0.00              
ATOM     66  CA  ILE    66      13.109  17.626  16.222  1.00  0.00              
ATOM     67  CA  GLU    67      14.928  14.512  14.902  1.00  0.00              
ATOM     68  CA  VAL    68      17.035  14.315  18.100  1.00  0.00              
ATOM     69  CA  LEU    69      14.000  14.644  20.358  1.00  0.00              
ATOM     70  CA  GLU    70      12.313  11.872  18.335  1.00  0.00              
ATOM     71  CA  ARG    71      15.271   9.588  19.042  1.00  0.00              
ATOM     72  CA  ILE    72      15.174  10.331  22.785  1.00  0.00              
ATOM     73  CA  ARG    73      11.399   9.645  22.880  1.00  0.00              
ATOM     74  CA  ASP    74      11.985   6.380  21.108  1.00  0.00              
ATOM     75  CA  GLY    75      14.439   4.998  23.596  1.00  0.00              
ATOM     76  CA  GLU    76      17.858   5.196  22.326  1.00  0.00              
ATOM     77  CA  ASN    77      19.475   5.669  25.838  1.00  0.00              
ATOM     78  CA  VAL    78      21.020   9.034  25.329  1.00  0.00              
ATOM     79  CA  LYS    79      20.670  11.930  27.696  1.00  0.00              
ATOM     80  CA  LEU    80      21.037  15.060  25.508  1.00  0.00              
ATOM     81  CA  VAL    81      21.216  18.539  26.982  1.00  0.00              
ATOM     82  CA  SER    82      21.025  21.613  24.733  1.00  0.00              
ATOM     83  CA  LEU    83      22.551  24.838  25.922  1.00  0.00              
ATOM     84  CA  ASP    84      21.576  28.292  25.177  1.00  0.00              
ATOM     85  CA  GLY    85      18.854  30.468  24.143  1.00  0.00              
ATOM     86  CA  PRO    86      15.126  30.544  24.528  1.00  0.00              
ATOM     87  CA  ALA    87      13.418  27.702  22.755  1.00  0.00              
ATOM     88  CA  PRO    88      11.527  28.651  19.591  1.00  0.00              
ATOM     89  CA  PRO    89       7.887  27.767  19.893  1.00  0.00              
ATOM     90  CA  LYS    90       7.699  25.144  17.137  1.00  0.00              
ATOM     91  CA  VAL    91      10.533  23.153  18.663  1.00  0.00              
ATOM     92  CA  MET    92       9.069  23.307  22.180  1.00  0.00              
ATOM     93  CA  LYS    93       5.687  22.163  20.982  1.00  0.00              
ATOM     94  CA  ARG    94       7.111  19.211  19.167  1.00  0.00              
ATOM     95  CA  LEU    95       9.117  18.288  22.303  1.00  0.00              
ATOM     96  CA  SER    96       6.140  18.530  24.582  1.00  0.00              
ATOM     97  CA  LEU    97       4.016  16.313  22.335  1.00  0.00              
ATOM     98  CA  ALA    98       6.807  13.709  22.139  1.00  0.00              
ATOM     99  CA  LEU    99       7.205  13.663  25.865  1.00  0.00              
ATOM    100  CA  GLN   100       3.534  13.235  26.468  1.00  0.00              
ATOM    101  CA  LYS   101       3.305  10.353  24.052  1.00  0.00              
ATOM    102  CA  LEU   102       6.216   8.666  25.614  1.00  0.00              
ATOM    103  CA  THR   103       4.461   9.210  29.393  1.00  0.00              
ATOM    104  CA  GLU   104       1.923   7.241  27.331  1.00  0.00              
TER                                                                             
END
