
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   68 (   68),  selected   68 , name T0348TS599_2
# Molecule2: number of CA atoms   61 (  465),  selected   61 , name T0348.pdb
# PARAMETERS: T0348TS599_2.T0348.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      D       2           -
LGA    D       2      A       3           -
LGA    A       3      K       4           -
LGA    K       4      F       5           -
LGA    F       5      L       6           -
LGA    L       6      E       7           -
LGA    E       7      I       8          4.298
LGA    I       8      L       9          3.216
LGA    L       9      -       -           -
LGA    V      10      V      10          0.821
LGA    C      11      C      11          1.056
LGA    P      12      P      12          0.554
LGA    L      13      L      13          0.849
LGA    C      14      C      14          0.983
LGA    K      15      K      15          0.510
LGA    G      16      G      16          0.724
LGA    P      17      P      17          0.578
LGA    L      18      L      18          0.714
LGA    V      19      V      19          0.709
LGA    F      20      F      20          0.607
LGA    D      21      D      21          0.432
LGA    K      22      K      22          0.905
LGA    S      23      S      23          1.732
LGA    K      24      K      24          1.643
LGA    D      25      D      25          0.676
LGA    E      26      E      26          1.413
LGA    L      27      L      27          1.351
LGA    I      28      I      28          0.603
LGA    C      29      C      29          1.349
LGA    K      30      K      30          2.471
LGA    G      31      G      31          1.965
LGA    D      32      D      32          0.611
LGA    R      33      R      33          0.822
LGA    L      34      L      34          0.803
LGA    A      35      A      35          2.022
LGA    F      36      F      36          2.528
LGA    P      37      P      37          2.468
LGA    I      38      I      38          1.268
LGA    K      39      K      39          3.198
LGA    D      40      D      40           -
LGA    G      41      G      41           -
LGA    -       -      I      42           -
LGA    I      42      P      43          2.824
LGA    P      43      M      44          3.115
LGA    M      44      M      45          2.905
LGA    M      45      L      46          4.685
LGA    L      46      E      47           -
LGA    E      47      S      48           -
LGA    S      48      E      49           -
LGA    E      49      A      50           -
LGA    A      50      R      51           -
LGA    R      51      E      52           -
LGA    E      52      L      53           -
LGA    L      53      A      54           -
LGA    A      54      P      55           -
LGA    P      55      E      56           -
LGA    E      56      E      57           -
LGA    E      57      E      58           -
LGA    E      58      V      59           -
LGA    V      59      K      60           -
LGA    K      60      L      61           -
LGA    L      61      E      62           -
LGA    E      62      -       -           -
LGA    H      63      -       -           -
LGA    H      64      -       -           -
LGA    H      65      -       -           -
LGA    H      66      -       -           -
LGA    H      67      -       -           -
LGA    H      68      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   68   61    5.0     36    1.95    86.11     53.911     1.759

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.575766 * X  +   0.777653 * Y  +   0.252485 * Z  +  11.379942
  Y_new =  -0.806154 * X  +   0.591472 * Y  +   0.016619 * Z  +  32.853443
  Z_new =  -0.136414 * X  +  -0.213111 * Y  +   0.967458 * Z  +  54.157349 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.216817    2.924776  [ DEG:   -12.4227    167.5773 ]
  Theta =   0.136841    3.004752  [ DEG:     7.8404    172.1596 ]
  Phi   =  -0.950595    2.190998  [ DEG:   -54.4651    125.5349 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0348TS599_2                                  
REMARK     2: T0348.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0348TS599_2.T0348.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   68   61   5.0   36   1.95   86.11  53.911
REMARK  ---------------------------------------------------------- 
MOLECULE T0348TS599_2
PFRMAT TS                                                                       
TARGET T0348                                                                    
MODEL  2                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      22.226  38.767  57.730  1.00  0.00              
ATOM      2  CA  ASP     2      19.757  39.167  61.111  1.00  0.00              
ATOM      3  CA  ALA     3      16.188  41.243  61.912  1.00  0.00              
ATOM      4  CA  LYS     4      14.934  41.682  58.067  1.00  0.00              
ATOM      5  CA  PHE     5      15.819  38.075  57.480  1.00  0.00              
ATOM      6  CA  LEU     6      13.913  36.973  60.618  1.00  0.00              
ATOM      7  CA  GLU     7      10.892  38.988  59.479  1.00  0.00              
ATOM      8  CA  ILE     8      11.023  37.534  56.031  1.00  0.00              
ATOM      9  CA  LEU     9      11.210  33.947  57.422  1.00  0.00              
ATOM     10  CA  VAL    10       8.462  33.776  60.049  1.00  0.00              
ATOM     11  CA  CYS    11       6.710  30.347  59.983  1.00  0.00              
ATOM     12  CA  PRO    12       3.050  30.235  60.705  1.00  0.00              
ATOM     13  CA  LEU    13       2.999  27.152  62.836  1.00  0.00              
ATOM     14  CA  CYS    14       5.750  27.618  65.295  1.00  0.00              
ATOM     15  CA  LYS    15       6.972  31.119  64.726  1.00  0.00              
ATOM     16  CA  GLY    16      10.605  29.951  64.494  1.00  0.00              
ATOM     17  CA  PRO    17      12.948  31.144  61.860  1.00  0.00              
ATOM     18  CA  LEU    18      12.648  30.092  58.266  1.00  0.00              
ATOM     19  CA  VAL    19      15.461  28.314  56.413  1.00  0.00              
ATOM     20  CA  PHE    20      15.742  28.585  52.657  1.00  0.00              
ATOM     21  CA  ASP    21      17.342  25.962  50.522  1.00  0.00              
ATOM     22  CA  LYS    22      18.580  27.768  47.373  1.00  0.00              
ATOM     23  CA  SER    23      19.262  24.740  45.248  1.00  0.00              
ATOM     24  CA  LYS    24      15.782  23.179  45.609  1.00  0.00              
ATOM     25  CA  ASP    25      13.822  26.346  46.096  1.00  0.00              
ATOM     26  CA  GLU    26      12.302  24.935  49.228  1.00  0.00              
ATOM     27  CA  LEU    27      11.456  26.665  52.445  1.00  0.00              
ATOM     28  CA  ILE    28      12.235  24.747  55.582  1.00  0.00              
ATOM     29  CA  CYS    29      10.489  25.545  58.811  1.00  0.00              
ATOM     30  CA  LYS    30      12.739  25.174  61.777  1.00  0.00              
ATOM     31  CA  GLY    31      10.583  24.021  64.583  1.00  0.00              
ATOM     32  CA  ASP    32       8.531  21.530  62.688  1.00  0.00              
ATOM     33  CA  ARG    33      11.060  20.281  60.095  1.00  0.00              
ATOM     34  CA  LEU    34       8.713  20.683  57.173  1.00  0.00              
ATOM     35  CA  ALA    35      10.015  20.962  53.665  1.00  0.00              
ATOM     36  CA  PHE    36       7.972  23.470  51.734  1.00  0.00              
ATOM     37  CA  PRO    37       8.286  24.250  48.083  1.00  0.00              
ATOM     38  CA  ILE    38       7.956  27.946  47.462  1.00  0.00              
ATOM     39  CA  LYS    39       4.229  28.376  46.903  1.00  0.00              
ATOM     40  CA  ASP    40       2.545  26.345  49.722  1.00  0.00              
ATOM     41  CA  GLY    41       5.124  27.561  52.222  1.00  0.00              
ATOM     42  CA  ILE    42       4.615  31.290  51.538  1.00  0.00              
ATOM     43  CA  PRO    43       0.854  31.063  52.023  1.00  0.00              
ATOM     44  CA  MET    44       1.169  29.183  55.293  1.00  0.00              
ATOM     45  CA  MET    45       3.676  31.579  56.777  1.00  0.00              
ATOM     46  CA  LEU    46       2.104  34.906  55.799  1.00  0.00              
ATOM     47  CA  GLU    47       2.484  37.702  58.384  1.00  0.00              
ATOM     48  CA  SER    48       1.100  40.696  56.483  1.00  0.00              
ATOM     49  CA  GLU    49       4.350  42.664  56.486  1.00  0.00              
ATOM     50  CA  ALA    50       6.510  39.791  55.169  1.00  0.00              
ATOM     51  CA  ARG    51       4.152  39.013  52.317  1.00  0.00              
ATOM     52  CA  GLU    52       4.046  42.687  51.258  1.00  0.00              
ATOM     53  CA  LEU    53       7.847  43.203  50.966  1.00  0.00              
ATOM     54  CA  ALA    54       8.416  45.205  47.825  1.00  0.00              
ATOM     55  CA  PRO    55      10.527  43.772  45.031  1.00  0.00              
ATOM     56  CA  GLU    56      13.495  45.859  45.962  1.00  0.00              
ATOM     57  CA  GLU    57      13.421  44.729  49.596  1.00  0.00              
ATOM     58  CA  GLU    58      13.162  41.053  48.553  1.00  0.00              
ATOM     59  CA  VAL    59      16.173  41.399  46.244  1.00  0.00              
ATOM     60  CA  LYS    60      18.238  43.043  49.033  1.00  0.00              
ATOM     61  CA  LEU    61      17.243  40.238  51.357  1.00  0.00              
ATOM     62  CA  GLU    62      18.236  37.510  48.873  1.00  0.00              
ATOM     63  CA  HIS    63      21.644  39.074  48.182  1.00  0.00              
ATOM     64  CA  HIS    64      22.609  39.462  51.884  1.00  0.00              
ATOM     65  CA  HIS    65      21.345  35.934  52.515  1.00  0.00              
ATOM     66  CA  HIS    66      23.723  34.261  49.715  1.00  0.00              
ATOM     67  CA  HIS    67      24.608  31.877  47.167  1.00  0.00              
ATOM     68  CA  HIS    68      21.752  31.650  44.113  1.00  0.00              
TER                                                                             
END
