
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   68 (   68),  selected   68 , name T0348TS599_4
# Molecule2: number of CA atoms   61 (  465),  selected   61 , name T0348.pdb
# PARAMETERS: T0348TS599_4.T0348.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      D       2           -
LGA    D       2      A       3           -
LGA    A       3      K       4           -
LGA    K       4      F       5           -
LGA    F       5      L       6           -
LGA    L       6      -       -           -
LGA    E       7      -       -           -
LGA    I       8      -       -           -
LGA    L       9      E       7           #
LGA    V      10      -       -           -
LGA    C      11      -       -           -
LGA    P      12      -       -           -
LGA    L      13      -       -           -
LGA    C      14      -       -           -
LGA    K      15      -       -           -
LGA    G      16      -       -           -
LGA    P      17      -       -           -
LGA    L      18      -       -           -
LGA    V      19      I       8           #
LGA    F      20      L       9          3.649
LGA    D      21      V      10          2.164
LGA    K      22      C      11           #
LGA    S      23      P      12          3.946
LGA    K      24      L      13          1.677
LGA    D      25      C      14          1.807
LGA    E      26      K      15          3.751
LGA    L      27      G      16          1.543
LGA    I      28      P      17          2.573
LGA    C      29      L      18          4.593
LGA    K      30      V      19          5.212
LGA    G      31      F      20           -
LGA    D      32      D      21           -
LGA    R      33      K      22           -
LGA    L      34      S      23           -
LGA    -       -      K      24           -
LGA    -       -      D      25           -
LGA    -       -      E      26           -
LGA    -       -      L      27           -
LGA    -       -      I      28           -
LGA    A      35      C      29           #
LGA    F      36      K      30          3.168
LGA    P      37      G      31          4.217
LGA    I      38      D      32          3.563
LGA    K      39      R      33           #
LGA    D      40      L      34          4.661
LGA    G      41      -       -           -
LGA    I      42      A      35          2.088
LGA    P      43      F      36          3.613
LGA    M      44      P      37          2.777
LGA    M      45      I      38          5.199
LGA    -       -      K      39           -
LGA    -       -      D      40           -
LGA    -       -      G      41           -
LGA    -       -      I      42           -
LGA    -       -      P      43           -
LGA    -       -      M      44           -
LGA    -       -      M      45           -
LGA    -       -      L      46           -
LGA    -       -      E      47           -
LGA    -       -      S      48           -
LGA    L      46      E      49           #
LGA    E      47      A      50           -
LGA    S      48      -       -           -
LGA    E      49      -       -           -
LGA    A      50      -       -           -
LGA    R      51      R      51          4.775
LGA    E      52      -       -           -
LGA    L      53      -       -           -
LGA    A      54      -       -           -
LGA    P      55      E      52           #
LGA    E      56      -       -           -
LGA    E      57      -       -           -
LGA    E      58      L      53          2.331
LGA    V      59      A      54          4.047
LGA    -       -      P      55           -
LGA    K      60      E      56          2.089
LGA    L      61      E      57          0.850
LGA    E      62      E      58          2.894
LGA    H      63      V      59          2.011
LGA    H      64      K      60          2.189
LGA    H      65      -       -           -
LGA    H      66      L      61          2.525
LGA    H      67      E      62           #
LGA    H      68      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   68   61    5.0     27    3.33     7.41     25.986     0.788

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.352409 * X  +  -0.839774 * Y  +  -0.413022 * Z  +  12.425942
  Y_new =  -0.770264 * X  +   0.510934 * Y  +  -0.381628 * Z  +  24.390707
  Z_new =   0.531508 * X  +   0.183647 * Y  +  -0.826906 * Z  +  54.593468 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   2.923050   -0.218542  [ DEG:   167.4784    -12.5216 ]
  Theta =  -0.560380   -2.581213  [ DEG:   -32.1074   -147.8926 ]
  Phi   =  -1.999884    1.141709  [ DEG:  -114.5849     65.4151 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0348TS599_4                                  
REMARK     2: T0348.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0348TS599_4.T0348.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   68   61   5.0   27   3.33    7.41  25.986
REMARK  ---------------------------------------------------------- 
MOLECULE T0348TS599_4
PFRMAT TS                                                                       
TARGET T0348                                                                    
MODEL  4                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      11.273  22.438  45.639  1.00  0.00              
ATOM      2  CA  ASP     2      11.353  24.376  41.908  1.00  0.00              
ATOM      3  CA  ALA     3      13.265  28.120  41.220  1.00  0.00              
ATOM      4  CA  LYS     4      10.158  30.918  41.762  1.00  0.00              
ATOM      5  CA  PHE     5       9.064  28.624  44.645  1.00  0.00              
ATOM      6  CA  LEU     6      12.511  28.501  46.142  1.00  0.00              
ATOM      7  CA  GLU     7      12.800  32.290  46.089  1.00  0.00              
ATOM      8  CA  ILE     8       9.481  32.699  47.939  1.00  0.00              
ATOM      9  CA  LEU     9      10.573  30.178  50.595  1.00  0.00              
ATOM     10  CA  VAL    10      14.172  30.920  51.611  1.00  0.00              
ATOM     11  CA  CYS    11      16.264  27.938  52.121  1.00  0.00              
ATOM     12  CA  PRO    12      18.859  25.605  53.431  1.00  0.00              
ATOM     13  CA  LEU    13      19.663  24.219  49.943  1.00  0.00              
ATOM     14  CA  CYS    14      20.222  27.361  47.864  1.00  0.00              
ATOM     15  CA  LYS    15      21.353  29.788  50.500  1.00  0.00              
ATOM     16  CA  GLY    16      18.616  32.414  49.885  1.00  0.00              
ATOM     17  CA  PRO    17      17.049  34.304  52.700  1.00  0.00              
ATOM     18  CA  LEU    18      15.651  32.785  55.814  1.00  0.00              
ATOM     19  CA  VAL    19      12.019  33.011  56.703  1.00  0.00              
ATOM     20  CA  PHE    20      10.228  33.135  59.905  1.00  0.00              
ATOM     21  CA  ASP    21       6.648  32.126  60.217  1.00  0.00              
ATOM     22  CA  LYS    22       5.199  34.173  63.116  1.00  0.00              
ATOM     23  CA  SER    23       1.753  32.602  62.804  1.00  0.00              
ATOM     24  CA  LYS    24       3.037  29.050  63.206  1.00  0.00              
ATOM     25  CA  ASP    25       5.771  29.846  65.635  1.00  0.00              
ATOM     26  CA  GLU    26       8.805  28.410  63.967  1.00  0.00              
ATOM     27  CA  LEU    27      11.951  30.443  63.559  1.00  0.00              
ATOM     28  CA  ILE    28      14.203  29.418  60.712  1.00  0.00              
ATOM     29  CA  CYS    29      17.297  31.199  59.582  1.00  0.00              
ATOM     30  CA  LYS    30      20.382  28.948  59.323  1.00  0.00              
ATOM     31  CA  GLY    31      22.900  31.625  60.067  1.00  0.00              
ATOM     32  CA  ASP    32      21.118  32.946  63.221  1.00  0.00              
ATOM     33  CA  ARG    33      20.199  29.604  64.716  1.00  0.00              
ATOM     34  CA  LEU    34      16.448  29.636  64.408  1.00  0.00              
ATOM     35  CA  ALA    35      14.622  26.366  64.614  1.00  0.00              
ATOM     36  CA  PHE    36      12.129  25.572  61.960  1.00  0.00              
ATOM     37  CA  PRO    37       9.008  23.620  62.061  1.00  0.00              
ATOM     38  CA  ILE    38       8.968  20.690  59.643  1.00  0.00              
ATOM     39  CA  LYS    39       5.323  20.882  58.543  1.00  0.00              
ATOM     40  CA  ASP    40       5.245  24.627  57.745  1.00  0.00              
ATOM     41  CA  GLY    41       8.564  24.441  55.996  1.00  0.00              
ATOM     42  CA  ILE    42       7.630  21.546  53.648  1.00  0.00              
ATOM     43  CA  PRO    43       4.366  23.208  52.527  1.00  0.00              
ATOM     44  CA  MET    44       6.112  26.533  51.732  1.00  0.00              
ATOM     45  CA  MET    45       8.740  24.685  49.697  1.00  0.00              
ATOM     46  CA  LEU    46       6.404  22.578  47.602  1.00  0.00              
ATOM     47  CA  GLU    47       7.213  20.695  44.444  1.00  0.00              
ATOM     48  CA  SER    48       4.743  17.829  44.201  1.00  0.00              
ATOM     49  CA  GLU    49       7.338  15.105  44.745  1.00  0.00              
ATOM     50  CA  ALA    50       8.787  16.825  47.818  1.00  0.00              
ATOM     51  CA  ARG    51       5.277  17.208  49.282  1.00  0.00              
ATOM     52  CA  GLU    52       4.685  13.443  49.074  1.00  0.00              
ATOM     53  CA  LEU    53       7.911  12.471  50.808  1.00  0.00              
ATOM     54  CA  ALA    54       7.457  10.300  53.817  1.00  0.00              
ATOM     55  CA  PRO    55       8.272  11.584  57.283  1.00  0.00              
ATOM     56  CA  GLU    56      11.488   9.666  57.421  1.00  0.00              
ATOM     57  CA  GLU    57      12.662  10.938  54.059  1.00  0.00              
ATOM     58  CA  GLU    58      11.840  14.567  55.082  1.00  0.00              
ATOM     59  CA  VAL    59      13.975  14.227  58.206  1.00  0.00              
ATOM     60  CA  LYS    60      16.797  12.814  56.072  1.00  0.00              
ATOM     61  CA  LEU    61      16.559  15.642  53.530  1.00  0.00              
ATOM     62  CA  GLU    62      16.633  18.286  56.306  1.00  0.00              
ATOM     63  CA  HIS    63      19.715  16.665  57.914  1.00  0.00              
ATOM     64  CA  HIS    64      21.729  16.148  54.704  1.00  0.00              
ATOM     65  CA  HIS    65      21.072  19.712  53.717  1.00  0.00              
ATOM     66  CA  HIS    66      22.030  21.348  56.762  1.00  0.00              
ATOM     67  CA  HIS    67      22.517  23.859  59.285  1.00  0.00              
ATOM     68  CA  HIS    68      18.869  24.840  61.106  1.00  0.00              
TER                                                                             
END
