
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  117 (  117),  selected  117 , name T0350TS599_5
# Molecule2: number of CA atoms  109 ( 1798),  selected  109 , name T0350.pdb
# PARAMETERS: T0350TS599_5.T0350.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1           -
LGA    N       2      N       2           -
LGA    -       -      I       3           -
LGA    -       -      E       4           -
LGA    -       -      R       5           -
LGA    -       -      L       6           -
LGA    -       -      T       7           -
LGA    -       -      T       8           -
LGA    -       -      L       9           -
LGA    -       -      Q      10           -
LGA    -       -      P      11           -
LGA    -       -      V      12           -
LGA    -       -      W      13           -
LGA    -       -      D      14           -
LGA    -       -      R      15           -
LGA    -       -      Y      16           -
LGA    -       -      D      17           -
LGA    -       -      T      18           -
LGA    -       -      Q      19           -
LGA    -       -      I      20           -
LGA    -       -      H      21           -
LGA    -       -      N      22           -
LGA    -       -      Q      23           -
LGA    -       -      K      24           -
LGA    -       -      D      25           -
LGA    -       -      N      26           -
LGA    -       -      D      27           -
LGA    -       -      N      28           -
LGA    -       -      E      29           -
LGA    -       -      V      30           -
LGA    I       3      P      31           #
LGA    E       4      V      32          1.373
LGA    R       5      H      33          5.079
LGA    L       6      Q      34           #
LGA    T       7      V      35           -
LGA    T       8      S      36           -
LGA    L       9      Y      37           -
LGA    Q      10      T      38           -
LGA    P      11      N      39           -
LGA    V      12      L      40           -
LGA    W      13      A      41           -
LGA    D      14      E      42           -
LGA    R      15      M      43           -
LGA    Y      16      V      44           -
LGA    D      17      G      45           -
LGA    T      18      E      46           -
LGA    Q      19      M      47           -
LGA    I      20      N      48           -
LGA    H      21      K      49           -
LGA    N      22      L      50           -
LGA    Q      23      L      51           -
LGA    K      24      E      52           -
LGA    D      25      P      53           -
LGA    N      26      S      54           -
LGA    D      27      -       -           -
LGA    N      28      -       -           -
LGA    E      29      -       -           -
LGA    V      30      -       -           -
LGA    P      31      -       -           -
LGA    V      32      -       -           -
LGA    H      33      -       -           -
LGA    Q      34      -       -           -
LGA    V      35      -       -           -
LGA    S      36      -       -           -
LGA    Y      37      -       -           -
LGA    T      38      -       -           -
LGA    N      39      -       -           -
LGA    L      40      -       -           -
LGA    A      41      -       -           -
LGA    E      42      -       -           -
LGA    M      43      -       -           -
LGA    V      44      -       -           -
LGA    G      45      -       -           -
LGA    E      46      -       -           -
LGA    M      47      -       -           -
LGA    N      48      -       -           -
LGA    K      49      Q      55           #
LGA    L      50      -       -           -
LGA    L      51      -       -           -
LGA    E      52      V      56          2.811
LGA    P      53      -       -           -
LGA    S      54      -       -           -
LGA    Q      55      H      57          1.804
LGA    V      56      L      58          3.858
LGA    H      57      K      59          2.473
LGA    L      58      F      60          3.062
LGA    K      59      E      61          4.132
LGA    F      60      L      62           #
LGA    E      61      H      63           -
LGA    L      62      D      64           -
LGA    H      63      K      65           -
LGA    D      64      L      66           -
LGA    K      65      N      67           -
LGA    L      66      E      68           -
LGA    N      67      Y      69           -
LGA    E      68      Y      70           -
LGA    Y      69      -       -           -
LGA    Y      70      -       -           -
LGA    V      71      V      71           #
LGA    K      72      K      72          4.994
LGA    V      73      V      73          1.712
LGA    I      74      I      74          2.424
LGA    E      75      E      75          3.848
LGA    -       -      D      76           -
LGA    -       -      S      77           -
LGA    D      76      T      78           #
LGA    S      77      N      79          3.414
LGA    T      78      E      80          3.333
LGA    N      79      V      81          3.395
LGA    E      80      I      82          4.387
LGA    V      81      R      83          2.246
LGA    I      82      E      84          3.108
LGA    R      83      -       -           -
LGA    E      84      -       -           -
LGA    I      85      I      85          2.926
LGA    P      86      P      86          2.997
LGA    P      87      P      87          2.780
LGA    K      88      K      88          3.038
LGA    R      89      R      89          3.161
LGA    W      90      W      90          3.493
LGA    L      91      L      91          3.086
LGA    D      92      D      92          1.184
LGA    F      93      F      93          1.544
LGA    Y      94      Y      94          1.976
LGA    A      95      A      95          1.538
LGA    A      96      A      96          1.558
LGA    M      97      M      97          1.356
LGA    T      98      T      98          1.271
LGA    E      99      E      99          2.814
LGA    F     100      F     100          3.322
LGA    L     101      L     101          2.704
LGA    G     102      G     102          2.531
LGA    L     103      L     103          4.761
LGA    F     104      F     104          5.538
LGA    V     105      V     105          3.810
LGA    D     106      D     106          1.685
LGA    E     107      E     107          3.049
LGA    -       -      K     108           -
LGA    K     108      K     109          2.131
LGA    K     109      -       -           -
LGA    L     110      -       -           -
LGA    E     111      -       -           -
LGA    H     112      -       -           -
LGA    H     113      -       -           -
LGA    H     114      -       -           -
LGA    H     115      -       -           -
LGA    H     116      -       -           -
LGA    H     117      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  117  109    5.0     42    3.10    66.67     25.719     1.314

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.859975 * X  +   0.503972 * Y  +   0.080347 * Z  +  -0.924260
  Y_new =  -0.485803 * X  +  -0.856651 * Y  +   0.173625 * Z  +   3.642247
  Z_new =   0.156331 * X  +   0.110280 * Y  +   0.981529 * Z  + -16.482164 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.111886   -3.029706  [ DEG:     6.4106   -173.5894 ]
  Theta =  -0.156975   -2.984617  [ DEG:    -8.9940   -171.0060 ]
  Phi   =  -2.627379    0.514213  [ DEG:  -150.5378     29.4622 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0350TS599_5                                  
REMARK     2: T0350.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0350TS599_5.T0350.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  117  109   5.0   42   3.10   66.67  25.719
REMARK  ---------------------------------------------------------- 
MOLECULE T0350TS599_5
PFRMAT TS                                                                       
TARGET T0350                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      -0.333   5.969 -26.384  1.00  0.00              
ATOM      2  CA  ASN     2      -2.834   2.994 -26.660  1.00  0.00              
ATOM      3  CA  ILE     3      -5.903   1.506 -29.125  1.00  0.00              
ATOM      4  CA  GLU     4      -8.128   0.082 -25.879  1.00  0.00              
ATOM      5  CA  ARG     5      -8.267   3.644 -24.580  1.00  0.00              
ATOM      6  CA  LEU     6      -9.698   5.258 -27.748  1.00  0.00              
ATOM      7  CA  THR     7     -12.504   2.675 -28.058  1.00  0.00              
ATOM      8  CA  THR     8     -13.575   3.071 -24.411  1.00  0.00              
ATOM      9  CA  LEU     9     -13.856   6.859 -24.661  1.00  0.00              
ATOM     10  CA  GLN    10     -16.010   6.568 -27.780  1.00  0.00              
ATOM     11  CA  PRO    11     -18.471   4.181 -26.103  1.00  0.00              
ATOM     12  CA  VAL    12     -18.715   6.610 -23.170  1.00  0.00              
ATOM     13  CA  TRP    13     -19.309   9.491 -25.643  1.00  0.00              
ATOM     14  CA  ASP    14     -22.179   7.563 -27.160  1.00  0.00              
ATOM     15  CA  ARG    15     -23.822   6.825 -23.790  1.00  0.00              
ATOM     16  CA  TYR    16     -24.460  10.298 -22.525  1.00  0.00              
ATOM     17  CA  ASP    17     -21.327  11.940 -21.278  1.00  0.00              
ATOM     18  CA  THR    18     -22.488  12.370 -17.649  1.00  0.00              
ATOM     19  CA  GLN    19     -23.684   8.769 -17.488  1.00  0.00              
ATOM     20  CA  ILE    20     -20.429   7.237 -18.864  1.00  0.00              
ATOM     21  CA  HIS    21     -18.248   9.307 -16.586  1.00  0.00              
ATOM     22  CA  ASN    22     -20.316   8.228 -13.585  1.00  0.00              
ATOM     23  CA  GLN    23     -20.088   4.599 -14.764  1.00  0.00              
ATOM     24  CA  LYS    24     -16.347   4.734 -15.145  1.00  0.00              
ATOM     25  CA  ASP    25     -16.034   6.230 -11.661  1.00  0.00              
ATOM     26  CA  ASN    26     -18.169   3.658  -9.956  1.00  0.00              
ATOM     27  CA  ASP    27     -16.912   0.847 -12.165  1.00  0.00              
ATOM     28  CA  ASN    28     -13.595   1.645 -10.578  1.00  0.00              
ATOM     29  CA  GLU    29     -13.328   2.919  -7.063  1.00  0.00              
ATOM     30  CA  VAL    30     -15.234   0.438  -5.228  1.00  0.00              
ATOM     31  CA  PRO    31     -12.381  -1.437  -6.766  1.00  0.00              
ATOM     32  CA  VAL    32      -9.754   1.007  -5.459  1.00  0.00              
ATOM     33  CA  HIS    33     -11.345   1.389  -2.063  1.00  0.00              
ATOM     34  CA  GLN    34     -11.740  -2.308  -1.522  1.00  0.00              
ATOM     35  CA  VAL    35      -8.102  -3.224  -2.314  1.00  0.00              
ATOM     36  CA  SER    36      -7.225  -6.010   0.186  1.00  0.00              
ATOM     37  CA  TYR    37      -3.880  -5.700   2.040  1.00  0.00              
ATOM     38  CA  THR    38      -2.165  -8.545   0.287  1.00  0.00              
ATOM     39  CA  ASN    39      -3.128  -7.268  -3.122  1.00  0.00              
ATOM     40  CA  LEU    40      -1.916  -3.804  -2.231  1.00  0.00              
ATOM     41  CA  ALA    41       1.434  -4.945  -1.007  1.00  0.00              
ATOM     42  CA  GLU    42       1.921  -6.988  -4.221  1.00  0.00              
ATOM     43  CA  MET    43       0.935  -4.035  -6.306  1.00  0.00              
ATOM     44  CA  VAL    44       3.341  -1.664  -4.487  1.00  0.00              
ATOM     45  CA  GLY    45       6.164  -4.115  -5.142  1.00  0.00              
ATOM     46  CA  GLU    46       5.204  -4.164  -8.842  1.00  0.00              
ATOM     47  CA  MET    47       5.126  -0.348  -8.924  1.00  0.00              
ATOM     48  CA  ASN    48       8.529  -0.126  -7.298  1.00  0.00              
ATOM     49  CA  LYS    49       9.976  -2.401  -9.942  1.00  0.00              
ATOM     50  CA  LEU    50       8.367  -0.255 -12.674  1.00  0.00              
ATOM     51  CA  LEU    51       9.774   2.931 -11.123  1.00  0.00              
ATOM     52  CA  GLU    52      13.307   1.648 -10.953  1.00  0.00              
ATOM     53  CA  PRO    53      13.304   0.562 -14.564  1.00  0.00              
ATOM     54  CA  SER    54      11.824   3.957 -15.700  1.00  0.00              
ATOM     55  CA  GLN    55      14.428   5.866 -13.686  1.00  0.00              
ATOM     56  CA  VAL    56      17.272   4.316 -15.741  1.00  0.00              
ATOM     57  CA  HIS    57      16.586   6.943 -18.460  1.00  0.00              
ATOM     58  CA  LEU    58      12.928   7.790 -18.665  1.00  0.00              
ATOM     59  CA  LYS    59      11.402   9.310 -21.734  1.00  0.00              
ATOM     60  CA  PHE    60       7.860  10.758 -21.454  1.00  0.00              
ATOM     61  CA  GLU    61       5.663  11.128 -24.489  1.00  0.00              
ATOM     62  CA  LEU    62       2.385  12.904 -24.221  1.00  0.00              
ATOM     63  CA  HIS    63      -0.209  12.445 -26.797  1.00  0.00              
ATOM     64  CA  ASP    64      -2.454  15.463 -27.025  1.00  0.00              
ATOM     65  CA  LYS    65      -5.148  13.938 -29.094  1.00  0.00              
ATOM     66  CA  LEU    66      -5.741  10.875 -27.201  1.00  0.00              
ATOM     67  CA  ASN    67      -4.904  12.243 -23.698  1.00  0.00              
ATOM     68  CA  GLU    68      -2.705   9.218 -23.366  1.00  0.00              
ATOM     69  CA  TYR    69       0.676   9.172 -21.707  1.00  0.00              
ATOM     70  CA  TYR    70       3.406   7.083 -23.195  1.00  0.00              
ATOM     71  CA  VAL    71       6.447   6.244 -21.173  1.00  0.00              
ATOM     72  CA  LYS    72       9.529   4.970 -22.906  1.00  0.00              
ATOM     73  CA  VAL    73      12.272   3.431 -20.830  1.00  0.00              
ATOM     74  CA  ILE    74      15.792   3.703 -22.100  1.00  0.00              
ATOM     75  CA  GLU    75      18.928   2.947 -20.061  1.00  0.00              
ATOM     76  CA  ASP    76      21.215   5.785 -21.153  1.00  0.00              
ATOM     77  CA  SER    77      24.513   3.997 -21.176  1.00  0.00              
ATOM     78  CA  THR    78      23.593   0.975 -23.198  1.00  0.00              
ATOM     79  CA  ASN    79      20.232   1.847 -24.819  1.00  0.00              
ATOM     80  CA  GLU    80      18.912  -1.530 -23.915  1.00  0.00              
ATOM     81  CA  VAL    81      15.349  -1.244 -22.757  1.00  0.00              
ATOM     82  CA  ILE    82      14.162   0.780 -25.695  1.00  0.00              
ATOM     83  CA  ARG    83      15.754  -1.552 -28.293  1.00  0.00              
ATOM     84  CA  GLU    84      14.318  -4.701 -26.841  1.00  0.00              
ATOM     85  CA  ILE    85      10.864  -3.625 -26.544  1.00  0.00              
ATOM     86  CA  PRO    86       8.221  -4.293 -29.147  1.00  0.00              
ATOM     87  CA  PRO    87       5.756  -1.353 -28.994  1.00  0.00              
ATOM     88  CA  LYS    88       2.895  -3.496 -27.819  1.00  0.00              
ATOM     89  CA  ARG    89       4.744  -4.893 -24.856  1.00  0.00              
ATOM     90  CA  TRP    90       5.929  -1.516 -23.651  1.00  0.00              
ATOM     91  CA  LEU    91       2.474  -0.035 -23.856  1.00  0.00              
ATOM     92  CA  ASP    92       0.967  -2.961 -21.929  1.00  0.00              
ATOM     93  CA  PHE    93       3.550  -2.668 -19.185  1.00  0.00              
ATOM     94  CA  TYR    94       2.917   1.098 -18.866  1.00  0.00              
ATOM     95  CA  ALA    95      -0.817   0.418 -18.750  1.00  0.00              
ATOM     96  CA  ALA    96      -0.523  -2.205 -16.031  1.00  0.00              
ATOM     97  CA  MET    97       1.627   0.119 -13.938  1.00  0.00              
ATOM     98  CA  THR    98      -0.771   2.983 -14.351  1.00  0.00              
ATOM     99  CA  GLU    99      -3.788   0.874 -13.350  1.00  0.00              
ATOM    100  CA  PHE   100      -1.988  -0.392 -10.219  1.00  0.00              
ATOM    101  CA  LEU   101      -0.467   2.764  -8.727  1.00  0.00              
ATOM    102  CA  GLY   102      -3.882   4.435  -9.312  1.00  0.00              
ATOM    103  CA  LEU   103      -5.934   1.739  -7.680  1.00  0.00              
ATOM    104  CA  PHE   104      -3.985   1.521  -4.491  1.00  0.00              
ATOM    105  CA  VAL   105      -2.947   5.090  -4.065  1.00  0.00              
ATOM    106  CA  ASP   106      -4.744   8.281  -4.170  1.00  0.00              
ATOM    107  CA  GLU   107      -4.939  10.087  -7.477  1.00  0.00              
ATOM    108  CA  LYS   108      -2.849  12.907  -6.050  1.00  0.00              
ATOM    109  CA  LYS   109       0.178  10.665  -5.549  1.00  0.00              
ATOM    110  CA  LEU   110      -0.001   9.294  -9.077  1.00  0.00              
ATOM    111  CA  GLU   111      -0.399  12.728 -10.568  1.00  0.00              
ATOM    112  CA  HIS   112       2.545  14.048  -8.657  1.00  0.00              
ATOM    113  CA  HIS   113       4.922  11.220  -9.652  1.00  0.00              
ATOM    114  CA  HIS   114       4.746  12.215 -13.287  1.00  0.00              
ATOM    115  CA  HIS   115       3.083   9.717 -15.199  1.00  0.00              
ATOM    116  CA  HIS   116       4.077  10.832 -19.149  1.00  0.00              
ATOM    117  CA  HIS   117       4.629  14.773 -20.537  1.00  0.00              
TER                                                                             
END
