
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   97 (   97),  selected   97 , name T0360TS393_1-D1
# Molecule2: number of CA atoms   97 (  785),  selected   97 , name T0360_D1.pdb
# PARAMETERS: T0360TS393_1-D1.T0360_D1.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    K      20      K      20           -
LGA    K      21      K      21           -
LGA    K      22      K      22           -
LGA    -       -      Q      23           -
LGA    -       -      T      24           -
LGA    -       -      E      25           -
LGA    -       -      M      26           -
LGA    -       -      I      27           -
LGA    -       -      A      28           -
LGA    Q      23      D      29          4.628
LGA    T      24      -       -           -
LGA    E      25      -       -           -
LGA    M      26      H      30          0.613
LGA    I      27      I      31          3.235
LGA    A      28      Y      32           -
LGA    D      29      G      33           -
LGA    -       -      K      34           -
LGA    -       -      Y      35           -
LGA    -       -      D      36           -
LGA    -       -      V      37           -
LGA    -       -      F      38           -
LGA    -       -      K      39           -
LGA    -       -      R      40           -
LGA    -       -      F      41           -
LGA    -       -      K      42           -
LGA    -       -      P      43           -
LGA    -       -      L      44           -
LGA    -       -      A      45           -
LGA    -       -      L      46           -
LGA    -       -      G      47           -
LGA    -       -      I      48           -
LGA    -       -      D      49           -
LGA    -       -      Q      50           -
LGA    -       -      D      51           -
LGA    -       -      L      52           -
LGA    H      30      I      53           #
LGA    I      31      A      54           #
LGA    Y      32      A      55          5.339
LGA    G      33      L      56          4.975
LGA    K      34      -       -           -
LGA    Y      35      -       -           -
LGA    D      36      -       -           -
LGA    V      37      P      57           #
LGA    F      38      Q      58          1.846
LGA    K      39      -       -           -
LGA    R      40      Y      59           #
LGA    F      41      D      60          2.962
LGA    K      42      -       -           -
LGA    P      43      A      61          2.549
LGA    L      44      -       -           -
LGA    A      45      -       -           -
LGA    L      46      -       -           -
LGA    G      47      -       -           -
LGA    I      48      -       -           -
LGA    D      49      A      62          4.761
LGA    -       -      L      63           -
LGA    -       -      I      64           -
LGA    -       -      A      65           -
LGA    Q      50      R      66          3.412
LGA    D      51      V      67           -
LGA    L      52      L      68           -
LGA    I      53      A      69           -
LGA    A      54      -       -           -
LGA    A      55      -       -           -
LGA    L      56      -       -           -
LGA    P      57      -       -           -
LGA    Q      58      -       -           -
LGA    Y      59      -       -           -
LGA    D      60      -       -           -
LGA    A      61      -       -           -
LGA    A      62      -       -           -
LGA    L      63      -       -           -
LGA    I      64      -       -           -
LGA    A      65      -       -           -
LGA    R      66      -       -           -
LGA    V      67      -       -           -
LGA    L      68      N      70          2.130
LGA    A      69      -       -           -
LGA    N      70      H      71          4.677
LGA    H      71      C      72          2.150
LGA    C      72      R      73          3.044
LGA    R      73      R      74          3.801
LGA    -       -      P      75           -
LGA    R      74      R      76          3.279
LGA    P      75      Y      77          2.686
LGA    R      76      L      78          1.997
LGA    Y      77      K      79          0.884
LGA    L      78      A      80          0.696
LGA    K      79      L      81          2.205
LGA    A      80      A      82          2.197
LGA    L      81      R      83          2.926
LGA    A      82      G      84          3.986
LGA    R      83      G      85          1.362
LGA    G      84      K      86          3.472
LGA    G      85      R      87          3.792
LGA    K      86      F      88          2.727
LGA    R      87      D      89          3.066
LGA    F      88      L      90          2.825
LGA    D      89      N      91          3.520
LGA    -       -      N      92           -
LGA    -       -      R      93           -
LGA    -       -      F      94           -
LGA    L      90      K      95           #
LGA    N      91      -       -           -
LGA    N      92      -       -           -
LGA    R      93      -       -           -
LGA    F      94      -       -           -
LGA    K      95      -       -           -
LGA    G      96      -       -           -
LGA    E      97      -       -           -
LGA    V      98      G      96          4.435
LGA    T      99      E      97          4.312
LGA    P     100      -       -           -
LGA    E     101      V      98           #
LGA    E     102      T      99          4.119
LGA    Q     103      P     100          3.779
LGA    A     104      E     101          1.342
LGA    I     105      E     102          2.183
LGA    A     106      Q     103          3.103
LGA    Q     107      A     104          1.643
LGA    -       -      I     105           -
LGA    -       -      A     106           -
LGA    N     108      Q     107          3.380
LGA    H     109      N     108          3.728
LGA    P     110      H     109           #
LGA    -       -      P     110           -
LGA    -       -      F     111           -
LGA    -       -      V     112           -
LGA    F     111      Q     113          2.047
LGA    V     112      Q     114          4.724
LGA    Q     113      A     115           -
LGA    Q     114      L     116           -
LGA    A     115      -       -           -
LGA    L     116      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   97   97    5.0     43    3.26     9.30     25.718     1.281

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.762904 * X  +   0.015792 * Y  +   0.646319 * Z  + -72.949638
  Y_new =   0.603704 * X  +  -0.340321 * Y  +   0.720918 * Z  +   4.429855
  Z_new =   0.231340 * X  +   0.940177 * Y  +   0.250099 * Z  + -12.164394 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   1.310805   -1.830788  [ DEG:    75.1036   -104.8964 ]
  Theta =  -0.233455   -2.908138  [ DEG:   -13.3760   -166.6240 ]
  Phi   =   2.472164   -0.669428  [ DEG:   141.6446    -38.3554 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0360TS393_1-D1                               
REMARK     2: T0360_D1.pdb                                  
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0360TS393_1-D1.T0360_D1.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   97   97   5.0   43   3.26    9.30  25.718
REMARK  ---------------------------------------------------------- 
MOLECULE T0360TS393_1-D1
PFRMAT TS
TARGET T0360
MODEL 1
PARENT N/A
ATOM     20  CA  LYS    20     -76.206 -12.826  -6.203  1.00 25.00           C
ATOM     21  CA  LYS    21     -80.025 -13.021  -6.410  1.00 25.00           C
ATOM     22  CA  LYS    22     -80.260  -9.210  -6.106  1.00 25.00           C
ATOM     23  CA  GLN    23     -77.664  -8.804  -8.892  1.00 25.00           C
ATOM     24  CA  THR    24     -79.636 -11.219 -11.116  1.00 25.00           C
ATOM     25  CA  GLU    25     -82.852  -9.252 -10.444  1.00 25.00           C
ATOM     26  CA  MET    26     -81.068  -5.983 -11.341  1.00 25.00           C
ATOM     27  CA  ILE    27     -79.776  -7.550 -14.588  1.00 25.00           C
ATOM     28  CA  ALA    28     -83.313  -8.738 -15.451  1.00 25.00           C
ATOM     29  CA  ASP    29     -84.681  -5.223 -14.791  1.00 25.00           C
ATOM     30  CA  HIS    30     -81.974  -3.719 -17.045  1.00 25.00           C
ATOM     31  CA  ILE    31     -82.851  -6.222 -19.808  1.00 25.00           C
ATOM     32  CA  TYR    32     -86.558  -5.320 -19.482  1.00 25.00           C
ATOM     33  CA  GLY    33     -87.736  -8.951 -19.541  1.00 25.00           C
ATOM     34  CA  LYS    34     -88.903  -7.888 -16.083  1.00 25.00           C
ATOM     35  CA  TYR    35     -92.306  -7.394 -17.767  1.00 25.00           C
ATOM     36  CA  ASP    36     -93.657  -5.714 -14.600  1.00 25.00           C
ATOM     37  CA  VAL    37     -90.606  -3.402 -14.497  1.00 25.00           C
ATOM     38  CA  PHE    38     -91.137  -2.495 -18.180  1.00 25.00           C
ATOM     39  CA  LYS    39     -94.825  -1.732 -17.485  1.00 25.00           C
ATOM     40  CA  ARG    40     -93.834   0.485 -14.525  1.00 25.00           C
ATOM     41  CA  PHE    41     -91.311   2.342 -16.729  1.00 25.00           C
ATOM     42  CA  LYS    42     -91.675   2.677 -20.453  1.00 25.00           C
ATOM     43  CA  PRO    43     -88.074   3.151 -21.450  1.00 25.00           C
ATOM     44  CA  LEU    44     -85.933   4.443 -24.320  1.00 25.00           C
ATOM     45  CA  ALA    45     -85.559   6.678 -27.376  1.00 25.00           C
ATOM     46  CA  LEU    46     -83.584   9.083 -25.274  1.00 25.00           C
ATOM     47  CA  GLY    47     -80.177   7.950 -23.893  1.00 25.00           C
ATOM     48  CA  ILE    48     -78.454  10.050 -21.194  1.00 25.00           C
ATOM     49  CA  ASP    49     -81.887  10.343 -19.521  1.00 25.00           C
ATOM     50  CA  GLN    50     -80.227  10.399 -16.070  1.00 25.00           C
ATOM     51  CA  ASP    51     -77.821  13.138 -17.244  1.00 25.00           C
ATOM     52  CA  LEU    52     -80.767  15.182 -18.590  1.00 25.00           C
ATOM     53  CA  ILE    53     -82.600  14.785 -15.251  1.00 25.00           C
ATOM     54  CA  ALA    54     -79.469  15.931 -13.367  1.00 25.00           C
ATOM     55  CA  ALA    55     -79.174  18.982 -15.663  1.00 25.00           C
ATOM     56  CA  LEU    56     -82.184  21.089 -14.521  1.00 25.00           C
ATOM     57  CA  PRO    57     -85.597  22.411 -13.595  1.00 25.00           C
ATOM     58  CA  GLN    58     -84.429  21.662  -9.993  1.00 25.00           C
ATOM     59  CA  TYR    59     -85.266  18.036 -10.921  1.00 25.00           C
ATOM     60  CA  ASP    60     -86.668  14.676 -11.816  1.00 25.00           C
ATOM     61  CA  ALA    61     -83.999  12.383 -10.262  1.00 25.00           C
ATOM     62  CA  ALA    62     -81.097  13.558  -8.056  1.00 25.00           C
ATOM     63  CA  LEU    63     -80.397   9.942  -7.008  1.00 25.00           C
ATOM     64  CA  ILE    64     -80.411   8.849 -10.678  1.00 25.00           C
ATOM     65  CA  ALA    65     -77.975  11.671 -11.552  1.00 25.00           C
ATOM     66  CA  ARG    66     -75.675  10.611  -8.679  1.00 25.00           C
ATOM     67  CA  VAL    67     -75.779   6.984  -9.903  1.00 25.00           C
ATOM     68  CA  LEU    68     -74.909   8.130 -13.452  1.00 25.00           C
ATOM     69  CA  ALA    69     -71.976  10.186 -12.097  1.00 25.00           C
ATOM     70  CA  ASN    70     -70.732   7.151 -10.119  1.00 25.00           C
ATOM     71  CA  HIS    71     -70.965   4.976 -13.262  1.00 25.00           C
ATOM     72  CA  CYS    72     -68.997   7.592 -15.249  1.00 25.00           C
ATOM     73  CA  ARG    73     -66.316   7.686 -12.516  1.00 25.00           C
ATOM     74  CA  ARG    74     -66.084   3.863 -12.580  1.00 25.00           C
ATOM     75  CA  PRO    75     -65.714   3.925 -16.392  1.00 25.00           C
ATOM     76  CA  ARG    76     -62.943   6.552 -16.105  1.00 25.00           C
ATOM     77  CA  TYR    77     -61.143   4.405 -13.494  1.00 25.00           C
ATOM     78  CA  LEU    78     -61.408   1.350 -15.788  1.00 25.00           C
ATOM     79  CA  LYS    79     -59.983   3.384 -18.703  1.00 25.00           C
ATOM     80  CA  ALA    80     -57.081   4.560 -16.498  1.00 25.00           C
ATOM     81  CA  LEU    81     -56.381   0.943 -15.449  1.00 25.00           C
ATOM     82  CA  ALA    82     -56.395  -0.149 -19.120  1.00 25.00           C
ATOM     83  CA  ARG    83     -57.859  -0.145 -22.630  1.00 25.00           C
ATOM     84  CA  GLY    84     -59.134  -3.685 -23.196  1.00 25.00           C
ATOM     85  CA  GLY    85     -62.623  -2.910 -22.070  1.00 25.00           C
ATOM     86  CA  LYS    86     -64.845  -3.330 -25.107  1.00 25.00           C
ATOM     87  CA  ARG    87     -67.929  -5.245 -23.884  1.00 25.00           C
ATOM     88  CA  PHE    88     -71.033  -7.467 -23.697  1.00 25.00           C
ATOM     89  CA  ASP    89     -72.457  -8.930 -26.975  1.00 25.00           C
ATOM     90  CA  LEU    90     -73.556  -5.547 -28.345  1.00 25.00           C
ATOM     91  CA  ASN    91     -74.522  -7.569 -31.421  1.00 25.00           C
ATOM     92  CA  ASN    92     -74.274  -6.845 -35.125  1.00 25.00           C
ATOM     93  CA  ARG    93     -72.703  -4.362 -37.564  1.00 25.00           C
ATOM     94  CA  PHE    94     -72.719  -0.742 -36.445  1.00 25.00           C
ATOM     95  CA  LYS    95     -70.562   1.267 -38.875  1.00 25.00           C
ATOM     96  CA  GLY    96     -68.000   4.089 -38.319  1.00 25.00           C
ATOM     97  CA  GLU    97     -66.501   3.955 -34.787  1.00 25.00           C
ATOM     98  CA  VAL    98     -65.950   4.101 -31.017  1.00 25.00           C
ATOM     99  CA  THR    99     -62.118   4.289 -30.790  1.00 25.00           C
ATOM    100  CA  PRO   100     -60.134   7.340 -29.679  1.00 25.00           C
ATOM    101  CA  GLU   101     -62.941   9.698 -28.573  1.00 25.00           C
ATOM    102  CA  GLU   102     -63.676   7.451 -25.560  1.00 25.00           C
ATOM    103  CA  GLN   103     -59.962   7.442 -24.630  1.00 25.00           C
ATOM    104  CA  ALA   104     -59.864  11.261 -24.882  1.00 25.00           C
ATOM    105  CA  ILE   105     -62.960  11.513 -22.641  1.00 25.00           C
ATOM    106  CA  ALA   106     -61.330   9.175 -20.084  1.00 25.00           C
ATOM    107  CA  GLN   107     -58.147  11.305 -20.129  1.00 25.00           C
ATOM    108  CA  ASN   108     -55.328  12.888 -18.111  1.00 25.00           C
ATOM    109  CA  HIS   109     -56.182  10.902 -15.016  1.00 25.00           C
ATOM    110  CA  PRO   110     -53.133  11.729 -12.971  1.00 25.00           C
ATOM    111  CA  PHE   111     -53.614   9.525  -9.877  1.00 25.00           C
ATOM    112  CA  VAL   112     -53.810  12.641  -7.658  1.00 25.00           C
ATOM    113  CA  GLN   113     -56.412  14.182 -10.009  1.00 25.00           C
ATOM    114  CA  GLN   114     -58.463  10.949  -9.896  1.00 25.00           C
ATOM    115  CA  ALA   115     -58.300  10.950  -6.069  1.00 25.00           C
ATOM    116  CA  LEU   116     -59.456  14.600  -5.996  1.00 25.00           C
TER
END
