
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  148 (  148),  selected  148 , name T0369TS393_5
# Molecule2: number of CA atoms  147 ( 1193),  selected  147 , name T0369.pdb
# PARAMETERS: T0369TS393_5.T0369.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      M       1           -
LGA    T       2      T       2           -
LGA    D       3      D       3           -
LGA    W       4      W       4           -
LGA    Q       5      Q       5           -
LGA    Q       6      Q       6           -
LGA    A       7      A       7           -
LGA    L       8      L       8           -
LGA    D       9      D       9           -
LGA    R      10      R      10           -
LGA    H      11      H      11           -
LGA    V      12      V      12           -
LGA    G      13      G      13           -
LGA    V      14      V      14           -
LGA    G      15      G      15           -
LGA    V      16      V      16           -
LGA    R      17      R      17           -
LGA    T      18      T      18           -
LGA    T      19      T      19           -
LGA    R      20      R      20           -
LGA    D      21      D      21           -
LGA    L      22      L      22           -
LGA    I      23      I      23           -
LGA    R      24      R      24           -
LGA    L      25      L      25           -
LGA    I      26      I      26           -
LGA    Q      27      Q      27           -
LGA    P      28      P      28           -
LGA    E      29      E      29           -
LGA    D      30      D      30           -
LGA    W      31      W      31           -
LGA    D      32      D      32           -
LGA    K      33      K      33           -
LGA    R      34      R      34           -
LGA    P      35      -       -           -
LGA    I      36      -       -           -
LGA    S      37      -       -           -
LGA    G      38      -       -           -
LGA    K      39      -       -           -
LGA    R      40      -       -           -
LGA    S      41      -       -           -
LGA    V      42      -       -           -
LGA    Y      43      -       -           -
LGA    E      44      -       -           -
LGA    V      45      -       -           -
LGA    A      46      -       -           -
LGA    V      47      -       -           -
LGA    H      48      -       -           -
LGA    L      49      -       -           -
LGA    A      50      -       -           -
LGA    V      51      -       -           -
LGA    L      52      -       -           -
LGA    L      53      -       -           -
LGA    E      54      -       -           -
LGA    A      55      -       -           -
LGA    D      56      -       -           -
LGA    L      57      -       -           -
LGA    R      58      -       -           -
LGA    I      59      -       -           -
LGA    A      60      -       -           -
LGA    T      61      -       -           -
LGA    G      62      -       -           -
LGA    A      63      -       -           -
LGA    T      64      -       -           -
LGA    A      65      P      35           #
LGA    D      66      I      36          3.912
LGA    E      67      S      37          1.874
LGA    M      68      G      38          4.867
LGA    A      69      K      39          6.773
LGA    Q      70      -       -           -
LGA    F      71      -       -           -
LGA    Y      72      R      40           #
LGA    A      73      S      41           #
LGA    V      74      -       -           -
LGA    P      75      -       -           -
LGA    V      76      -       -           -
LGA    L      77      -       -           -
LGA    P      78      -       -           -
LGA    E      79      -       -           -
LGA    Q      80      -       -           -
LGA    L      81      V      42          0.682
LGA    V      82      -       -           -
LGA    D      83      Y      43          3.277
LGA    R      84      E      44          2.456
LGA    L      85      V      45          2.015
LGA    D      86      A      46          2.198
LGA    Q      87      V      47          0.895
LGA    S      88      H      48          0.488
LGA    W      89      L      49          1.160
LGA    Q      90      A      50          2.083
LGA    Y      91      V      51          2.254
LGA    Y      92      L      52          1.147
LGA    Q      93      L      53          1.095
LGA    D      94      E      54          1.523
LGA    R      95      A      55          1.439
LGA    L      96      D      56          2.996
LGA    M      97      L      57          3.551
LGA    A      98      R      58          2.013
LGA    -       -      I      59           -
LGA    D      99      A      60          2.757
LGA    -       -      T      61           -
LGA    -       -      G      62           -
LGA    -       -      A      63           -
LGA    -       -      T      64           -
LGA    -       -      A      65           -
LGA    -       -      D      66           -
LGA    -       -      E      67           -
LGA    -       -      M      68           -
LGA    -       -      A      69           -
LGA    -       -      Q      70           -
LGA    -       -      F      71           -
LGA    -       -      Y      72           -
LGA    -       -      A      73           -
LGA    -       -      V      74           -
LGA    -       -      P      75           -
LGA    -       -      V      76           -
LGA    -       -      L      77           -
LGA    -       -      P      78           -
LGA    -       -      E      79           -
LGA    -       -      Q      80           -
LGA    -       -      L      81           -
LGA    -       -      V      82           -
LGA    -       -      D      83           -
LGA    -       -      R      84           -
LGA    -       -      L      85           -
LGA    -       -      D      86           -
LGA    -       -      Q      87           -
LGA    -       -      S      88           -
LGA    -       -      W      89           -
LGA    -       -      Q      90           -
LGA    -       -      Y      91           -
LGA    -       -      Y      92           -
LGA    -       -      Q      93           -
LGA    -       -      D      94           -
LGA    -       -      R      95           -
LGA    -       -      L      96           -
LGA    -       -      M      97           -
LGA    -       -      A      98           -
LGA    -       -      D      99           -
LGA    F     100      F     100          4.821
LGA    S     101      -       -           -
LGA    T     102      -       -           -
LGA    E     103      -       -           -
LGA    T     104      -       -           -
LGA    T     105      -       -           -
LGA    Y     106      -       -           -
LGA    W     107      S     101          5.230
LGA    G     108      T     102          4.577
LGA    V     109      E     103          4.384
LGA    -       -      T     104           -
LGA    -       -      T     105           -
LGA    -       -      Y     106           -
LGA    -       -      W     107           -
LGA    -       -      G     108           -
LGA    -       -      V     109           -
LGA    -       -      T     110           -
LGA    T     110      D     111           #
LGA    D     111      S     112          1.389
LGA    -       -      T     113           -
LGA    -       -      T     114           -
LGA    S     112      G     115          0.644
LGA    T     113      W     116          1.112
LGA    T     114      L     117          1.027
LGA    G     115      L     118          0.801
LGA    W     116      E     119          0.582
LGA    L     117      A     120          0.593
LGA    L     118      A     121          0.789
LGA    E     119      V     122          0.811
LGA    A     120      H     123          0.777
LGA    A     121      L     124          0.799
LGA    V     122      Y     125          0.754
LGA    H     123      H     126          0.744
LGA    L     124      H     127          1.050
LGA    Y     125      R     128          0.509
LGA    H     126      S     129          0.865
LGA    H     127      Q     130          1.011
LGA    R     128      L     131          0.772
LGA    S     129      L     132          1.107
LGA    Q     130      D     133          1.531
LGA    L     131      Y     134          1.419
LGA    L     132      L     135          1.400
LGA    D     133      N     136          2.150
LGA    Y     134      L     137          2.150
LGA    L     135      L     138          2.151
LGA    N     136      G     139          2.295
LGA    L     137      Y     140           #
LGA    L     138      D     141           -
LGA    G     139      I     142           -
LGA    Y     140      K     143           -
LGA    D     141      L     144           -
LGA    I     142      D     145           -
LGA    K     143      L     146           -
LGA    L     144      F     147           -
LGA    D     145      -       -           -
LGA    L     146      -       -           -
LGA    F     147      -       -           -
LGA    E     148      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  148  147    5.0     52    2.39     7.69     26.933     2.088

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.130568 * X  +   0.062837 * Y  +   0.989446 * Z  +  -4.339893
  Y_new =  -0.189187 * X  +  -0.981230 * Y  +   0.037350 * Z  +  -3.296229
  Z_new =   0.973222 * X  +  -0.182314 * Y  +   0.140005 * Z  + -10.867348 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -0.915915    2.225678  [ DEG:   -52.4781    127.5219 ]
  Theta =  -1.338853   -1.802739  [ DEG:   -76.7106   -103.2894 ]
  Phi   =  -2.174883    0.966710  [ DEG:  -124.6116     55.3884 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0369TS393_5                                  
REMARK     2: T0369.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0369TS393_5.T0369.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  148  147   5.0   52   2.39    7.69  26.933
REMARK  ---------------------------------------------------------- 
MOLECULE T0369TS393_5
PFRMAT TS
TARGET T0369
MODEL 5
PARENT N/A
ATOM      1  CA  MET     1     -18.294 -14.536 -24.389  1.00 25.00           C
ATOM      2  CA  THR     2     -21.016 -12.237 -22.956  1.00 25.00           C
ATOM      3  CA  ASP     3     -22.480 -12.683 -19.504  1.00 25.00           C
ATOM      4  CA  TRP     4     -19.585 -11.829 -17.145  1.00 25.00           C
ATOM      5  CA  GLN     5     -19.289  -8.354 -18.727  1.00 25.00           C
ATOM      6  CA  GLN     6     -23.056  -7.810 -18.296  1.00 25.00           C
ATOM      7  CA  ALA     7     -22.814  -8.869 -14.623  1.00 25.00           C
ATOM      8  CA  LEU     8     -19.901  -6.439 -14.090  1.00 25.00           C
ATOM      9  CA  ASP     9     -21.925  -3.620 -15.707  1.00 25.00           C
ATOM     10  CA  ARG    10     -24.904  -4.423 -13.439  1.00 25.00           C
ATOM     11  CA  HIS    11     -22.615  -4.359 -10.369  1.00 25.00           C
ATOM     12  CA  VAL    12     -24.259  -2.196  -7.628  1.00 25.00           C
ATOM     13  CA  GLY    13     -25.345   0.602 -10.017  1.00 25.00           C
ATOM     14  CA  VAL    14     -21.811   0.626 -11.263  1.00 25.00           C
ATOM     15  CA  GLY    15     -22.031   4.353 -12.187  1.00 25.00           C
ATOM     16  CA  VAL    16     -19.796   7.429 -12.270  1.00 25.00           C
ATOM     17  CA  ARG    17     -17.225   9.789 -10.754  1.00 25.00           C
ATOM     18  CA  THR    18     -14.981   7.163  -9.103  1.00 25.00           C
ATOM     19  CA  THR    19     -15.265   4.933 -12.204  1.00 25.00           C
ATOM     20  CA  ARG    20     -14.343   7.896 -14.448  1.00 25.00           C
ATOM     21  CA  ASP    21     -11.310   8.658 -12.238  1.00 25.00           C
ATOM     22  CA  LEU    22     -10.218   4.993 -12.431  1.00 25.00           C
ATOM     23  CA  ILE    23     -10.562   5.066 -16.245  1.00 25.00           C
ATOM     24  CA  ARG    24      -8.466   8.268 -16.397  1.00 25.00           C
ATOM     25  CA  LEU    25      -5.782   6.645 -14.201  1.00 25.00           C
ATOM     26  CA  ILE    26      -5.741   3.568 -16.482  1.00 25.00           C
ATOM     27  CA  GLN    27      -6.241   5.280 -19.777  1.00 25.00           C
ATOM     28  CA  PRO    28      -9.053   6.880 -21.742  1.00 25.00           C
ATOM     29  CA  GLU    29      -7.885  10.104 -23.448  1.00 25.00           C
ATOM     30  CA  ASP    30      -4.986   8.215 -25.090  1.00 25.00           C
ATOM     31  CA  TRP    31      -5.648   4.732 -26.540  1.00 25.00           C
ATOM     32  CA  ASP    32      -6.617   6.665 -29.691  1.00 25.00           C
ATOM     33  CA  LYS    33      -6.632   3.148 -31.286  1.00 25.00           C
ATOM     34  CA  ARG    34      -7.287  -0.596 -31.574  1.00 25.00           C
ATOM     35  CA  PRO    35      -4.384  -2.789 -30.457  1.00 25.00           C
ATOM     36  CA  ILE    36      -4.314  -5.854 -28.240  1.00 25.00           C
ATOM     37  CA  SER    37      -1.653  -8.590 -28.373  1.00 25.00           C
ATOM     38  CA  GLY    38       1.451  -6.501 -27.775  1.00 25.00           C
ATOM     39  CA  LYS    39       1.008  -6.045 -24.008  1.00 25.00           C
ATOM     40  CA  ARG    40       3.457  -4.739 -21.368  1.00 25.00           C
ATOM     41  CA  SER    41       1.431  -1.504 -21.054  1.00 25.00           C
ATOM     42  CA  VAL    42      -1.789  -3.534 -20.630  1.00 25.00           C
ATOM     43  CA  TYR    43      -0.120  -5.664 -17.920  1.00 25.00           C
ATOM     44  CA  GLU    44       1.045  -2.495 -16.113  1.00 25.00           C
ATOM     45  CA  VAL    45      -2.504  -1.065 -16.279  1.00 25.00           C
ATOM     46  CA  ALA    46      -3.911  -4.332 -14.856  1.00 25.00           C
ATOM     47  CA  VAL    47      -1.348  -4.227 -12.012  1.00 25.00           C
ATOM     48  CA  HIS    48      -2.306  -0.598 -11.250  1.00 25.00           C
ATOM     49  CA  LEU    49      -6.012  -1.564 -11.186  1.00 25.00           C
ATOM     50  CA  ALA    50      -5.242  -4.458  -8.799  1.00 25.00           C
ATOM     51  CA  VAL    51      -3.279  -2.087  -6.520  1.00 25.00           C
ATOM     52  CA  LEU    52      -6.205   0.383  -6.526  1.00 25.00           C
ATOM     53  CA  LEU    53      -8.627  -2.445  -5.632  1.00 25.00           C
ATOM     54  CA  GLU    54      -6.335  -3.534  -2.764  1.00 25.00           C
ATOM     55  CA  ALA    55      -6.184   0.072  -1.483  1.00 25.00           C
ATOM     56  CA  ASP    56     -10.003   0.307  -1.624  1.00 25.00           C
ATOM     57  CA  LEU    57     -10.302  -2.981   0.316  1.00 25.00           C
ATOM     58  CA  ARG    58      -7.854  -1.675   2.956  1.00 25.00           C
ATOM     59  CA  ILE    59      -9.880   1.559   3.270  1.00 25.00           C
ATOM     60  CA  ALA    60     -13.101  -0.470   3.694  1.00 25.00           C
ATOM     61  CA  THR    61     -15.566  -3.428   3.751  1.00 25.00           C
ATOM     62  CA  GLY    62     -15.307  -6.656   1.689  1.00 25.00           C
ATOM     63  CA  ALA    63     -12.692  -7.161  -1.040  1.00 25.00           C
ATOM     64  CA  THR    64     -11.922 -10.466   0.762  1.00 25.00           C
ATOM     65  CA  ALA    65      -9.451 -11.684  -1.862  1.00 25.00           C
ATOM     66  CA  ASP    66     -10.773 -14.882  -3.503  1.00 25.00           C
ATOM     67  CA  GLU    67     -11.624 -12.927  -6.684  1.00 25.00           C
ATOM     68  CA  MET    68      -8.106 -11.415  -6.726  1.00 25.00           C
ATOM     69  CA  ALA    69      -6.575 -14.902  -6.317  1.00 25.00           C
ATOM     70  CA  GLN    70      -8.724 -16.210  -9.205  1.00 25.00           C
ATOM     71  CA  PHE    71      -7.606 -13.276 -11.398  1.00 25.00           C
ATOM     72  CA  TYR    72      -5.794 -13.654 -14.729  1.00 25.00           C
ATOM     73  CA  ALA    73      -5.704 -17.389 -14.188  1.00 25.00           C
ATOM     74  CA  VAL    74      -2.783 -16.900 -11.866  1.00 25.00           C
ATOM     75  CA  PRO    75      -1.522 -20.068 -13.521  1.00 25.00           C
ATOM     76  CA  VAL    76       0.004 -22.271 -10.867  1.00 25.00           C
ATOM     77  CA  LEU    77       0.356 -20.400  -7.529  1.00 25.00           C
ATOM     78  CA  PRO    78       1.097 -17.572  -5.041  1.00 25.00           C
ATOM     79  CA  GLU    79       4.586 -17.388  -6.608  1.00 25.00           C
ATOM     80  CA  GLN    80       3.052 -16.372  -9.967  1.00 25.00           C
ATOM     81  CA  LEU    81       0.991 -13.652  -8.230  1.00 25.00           C
ATOM     82  CA  VAL    82       4.136 -12.357  -6.471  1.00 25.00           C
ATOM     83  CA  ASP    83       6.000 -12.271  -9.815  1.00 25.00           C
ATOM     84  CA  ARG    84       3.103 -10.340 -11.409  1.00 25.00           C
ATOM     85  CA  LEU    85       3.139  -7.841  -8.507  1.00 25.00           C
ATOM     86  CA  ASP    86       6.920  -7.383  -8.918  1.00 25.00           C
ATOM     87  CA  GLN    87       6.465  -6.786 -12.673  1.00 25.00           C
ATOM     88  CA  SER    88       3.737  -4.194 -11.955  1.00 25.00           C
ATOM     89  CA  TRP    89       6.034  -2.435  -9.446  1.00 25.00           C
ATOM     90  CA  GLN    90       8.859  -2.382 -12.031  1.00 25.00           C
ATOM     91  CA  TYR    91       6.476  -0.902 -14.639  1.00 25.00           C
ATOM     92  CA  TYR    92       5.374   1.786 -12.144  1.00 25.00           C
ATOM     93  CA  GLN    93       9.035   2.629 -11.399  1.00 25.00           C
ATOM     94  CA  ASP    94       9.761   2.905 -15.150  1.00 25.00           C
ATOM     95  CA  ARG    95       6.743   5.222 -15.588  1.00 25.00           C
ATOM     96  CA  LEU    96       7.961   7.398 -12.682  1.00 25.00           C
ATOM     97  CA  MET    97      11.450   7.582 -14.249  1.00 25.00           C
ATOM     98  CA  ALA    98       9.916   8.598 -17.607  1.00 25.00           C
ATOM     99  CA  ASP    99       7.854  11.317 -15.870  1.00 25.00           C
ATOM    100  CA  PHE   100      11.218  12.715 -14.775  1.00 25.00           C
ATOM    101  CA  SER   101      12.997  14.104 -17.872  1.00 25.00           C
ATOM    102  CA  THR   102      15.267  12.808 -20.646  1.00 25.00           C
ATOM    103  CA  GLU   103      14.169  14.559 -23.806  1.00 25.00           C
ATOM    104  CA  THR   104      10.707  16.139 -24.411  1.00 25.00           C
ATOM    105  CA  THR   105      11.092  19.907 -24.130  1.00 25.00           C
ATOM    106  CA  TYR   106      10.759  21.506 -20.691  1.00 25.00           C
ATOM    107  CA  TRP   107       7.426  21.965 -18.810  1.00 25.00           C
ATOM    108  CA  GLY   108       4.911  21.287 -16.029  1.00 25.00           C
ATOM    109  CA  VAL   109       3.727  18.179 -14.219  1.00 25.00           C
ATOM    110  CA  THR   110       6.787  18.021 -11.989  1.00 25.00           C
ATOM    111  CA  ASP   111       4.174  17.956  -9.240  1.00 25.00           C
ATOM    112  CA  SER   112       4.266  14.869  -7.059  1.00 25.00           C
ATOM    113  CA  THR   113       6.349  12.742  -9.441  1.00 25.00           C
ATOM    114  CA  THR   114       8.925  10.736  -7.440  1.00 25.00           C
ATOM    115  CA  GLY   115       6.582  10.706  -4.409  1.00 25.00           C
ATOM    116  CA  TRP   116       3.700   9.493  -6.620  1.00 25.00           C
ATOM    117  CA  LEU   117       5.921   6.716  -8.039  1.00 25.00           C
ATOM    118  CA  LEU   118       6.912   5.663  -4.492  1.00 25.00           C
ATOM    119  CA  GLU   119       3.225   5.577  -3.462  1.00 25.00           C
ATOM    120  CA  ALA   120       2.394   3.430  -6.522  1.00 25.00           C
ATOM    121  CA  ALA   121       5.249   1.033  -5.646  1.00 25.00           C
ATOM    122  CA  VAL   122       3.966   0.783  -2.045  1.00 25.00           C
ATOM    123  CA  HIS   123       0.435   0.038  -3.328  1.00 25.00           C
ATOM    124  CA  LEU   124       1.823  -2.683  -5.639  1.00 25.00           C
ATOM    125  CA  TYR   125       3.751  -4.222  -2.710  1.00 25.00           C
ATOM    126  CA  HIS   126       0.573  -4.196  -0.572  1.00 25.00           C
ATOM    127  CA  HIS   127      -1.372  -5.895  -3.400  1.00 25.00           C
ATOM    128  CA  ARG   128       1.360  -8.560  -3.711  1.00 25.00           C
ATOM    129  CA  SER   129       1.235  -9.165   0.068  1.00 25.00           C
ATOM    130  CA  GLN   130      -2.575  -9.519  -0.090  1.00 25.00           C
ATOM    131  CA  LEU   131      -2.248 -12.021  -2.970  1.00 25.00           C
ATOM    132  CA  LEU   132       0.327 -14.027  -0.968  1.00 25.00           C
ATOM    133  CA  ASP   133      -2.016 -14.057   2.062  1.00 25.00           C
ATOM    134  CA  TYR   134      -4.898 -15.270  -0.149  1.00 25.00           C
ATOM    135  CA  LEU   135      -2.675 -18.048  -1.567  1.00 25.00           C
ATOM    136  CA  ASN   136      -1.685 -19.100   1.980  1.00 25.00           C
ATOM    137  CA  LEU   137      -5.373 -19.186   3.010  1.00 25.00           C
ATOM    138  CA  LEU   138      -6.203 -21.333  -0.050  1.00 25.00           C
ATOM    139  CA  GLY   139      -9.663 -20.212  -1.069  1.00 25.00           C
ATOM    140  CA  TYR   140     -11.994 -22.102   1.346  1.00 25.00           C
ATOM    141  CA  ASP   141     -12.611 -25.714   2.314  1.00 25.00           C
ATOM    142  CA  ILE   142     -14.486 -28.968   1.504  1.00 25.00           C
ATOM    143  CA  LYS   143     -16.437 -28.952  -1.809  1.00 25.00           C
ATOM    144  CA  LEU   144     -17.910 -25.839  -3.346  1.00 25.00           C
ATOM    145  CA  ASP   145     -19.940 -26.842  -6.437  1.00 25.00           C
ATOM    146  CA  LEU   146     -19.049 -24.491  -9.247  1.00 25.00           C
ATOM    147  CA  PHE   147     -18.931 -21.013  -7.754  1.00 25.00           C
ATOM    148  CA  GLU   148     -18.349 -17.797  -9.649  1.00 25.00           C
TER
END
