
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  148 (  148),  selected  148 , name T0369TS599_4
# Molecule2: number of CA atoms  147 ( 1193),  selected  147 , name T0369.pdb
# PARAMETERS: T0369TS599_4.T0369.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    M       1      -       -           -
LGA    T       2      -       -           -
LGA    D       3      -       -           -
LGA    W       4      -       -           -
LGA    Q       5      -       -           -
LGA    Q       6      -       -           -
LGA    A       7      -       -           -
LGA    L       8      -       -           -
LGA    D       9      -       -           -
LGA    R      10      -       -           -
LGA    H      11      -       -           -
LGA    V      12      -       -           -
LGA    G      13      M       1          4.271
LGA    V      14      T       2          2.134
LGA    G      15      D       3          4.755
LGA    V      16      W       4           #
LGA    R      17      Q       5          3.821
LGA    T      18      Q       6          1.382
LGA    T      19      A       7          1.717
LGA    R      20      L       8          3.968
LGA    D      21      D       9          4.692
LGA    L      22      R      10          3.372
LGA    I      23      H      11          2.453
LGA    -       -      V      12           -
LGA    R      24      G      13          4.642
LGA    L      25      -       -           -
LGA    I      26      -       -           -
LGA    Q      27      V      14          3.397
LGA    P      28      G      15           -
LGA    E      29      V      16           -
LGA    D      30      R      17           -
LGA    W      31      -       -           -
LGA    D      32      -       -           -
LGA    K      33      T      18          4.728
LGA    R      34      T      19          4.041
LGA    -       -      R      20           -
LGA    -       -      D      21           -
LGA    -       -      L      22           -
LGA    P      35      I      23          1.877
LGA    I      36      R      24           #
LGA    S      37      L      25           -
LGA    -       -      I      26           -
LGA    -       -      Q      27           -
LGA    -       -      P      28           -
LGA    -       -      E      29           -
LGA    -       -      D      30           -
LGA    -       -      W      31           -
LGA    -       -      D      32           -
LGA    -       -      K      33           -
LGA    -       -      R      34           -
LGA    -       -      P      35           -
LGA    -       -      I      36           -
LGA    -       -      S      37           -
LGA    -       -      G      38           -
LGA    -       -      K      39           -
LGA    -       -      R      40           -
LGA    -       -      S      41           -
LGA    -       -      V      42           -
LGA    -       -      Y      43           -
LGA    G      38      E      44           #
LGA    -       -      V      45           -
LGA    -       -      A      46           -
LGA    -       -      V      47           -
LGA    -       -      H      48           -
LGA    K      39      L      49          1.812
LGA    R      40      A      50          2.360
LGA    S      41      V      51          1.351
LGA    V      42      L      52          1.866
LGA    Y      43      L      53          1.730
LGA    E      44      E      54          1.873
LGA    V      45      A      55          1.550
LGA    A      46      D      56          1.579
LGA    V      47      L      57          1.943
LGA    H      48      R      58          1.690
LGA    L      49      I      59          1.680
LGA    A      50      A      60          1.986
LGA    V      51      T      61          2.477
LGA    L      52      G      62          2.275
LGA    L      53      A      63           #
LGA    -       -      T      64           -
LGA    -       -      A      65           -
LGA    -       -      D      66           -
LGA    -       -      E      67           -
LGA    -       -      M      68           -
LGA    -       -      A      69           -
LGA    -       -      Q      70           -
LGA    -       -      F      71           -
LGA    -       -      Y      72           -
LGA    -       -      A      73           -
LGA    -       -      V      74           -
LGA    -       -      P      75           -
LGA    -       -      V      76           -
LGA    -       -      L      77           -
LGA    -       -      P      78           -
LGA    -       -      E      79           -
LGA    -       -      Q      80           -
LGA    -       -      L      81           -
LGA    -       -      V      82           -
LGA    -       -      D      83           -
LGA    -       -      R      84           -
LGA    -       -      L      85           -
LGA    -       -      D      86           -
LGA    -       -      Q      87           -
LGA    -       -      S      88           -
LGA    -       -      W      89           -
LGA    -       -      Q      90           -
LGA    -       -      Y      91           -
LGA    -       -      Y      92           -
LGA    -       -      Q      93           -
LGA    -       -      D      94           -
LGA    -       -      R      95           -
LGA    -       -      L      96           -
LGA    -       -      M      97           -
LGA    -       -      A      98           -
LGA    -       -      D      99           -
LGA    E      54      F     100           #
LGA    A      55      S     101          3.845
LGA    D      56      T     102           #
LGA    L      57      E     103           #
LGA    R      58      -       -           -
LGA    I      59      -       -           -
LGA    A      60      -       -           -
LGA    T      61      -       -           -
LGA    G      62      -       -           -
LGA    A      63      -       -           -
LGA    T      64      -       -           -
LGA    A      65      -       -           -
LGA    D      66      -       -           -
LGA    E      67      -       -           -
LGA    M      68      -       -           -
LGA    A      69      -       -           -
LGA    Q      70      -       -           -
LGA    F      71      -       -           -
LGA    Y      72      -       -           -
LGA    A      73      -       -           -
LGA    V      74      -       -           -
LGA    P      75      T     104           #
LGA    V      76      T     105          2.831
LGA    L      77      Y     106           #
LGA    -       -      W     107           -
LGA    -       -      G     108           -
LGA    P      78      V     109          2.402
LGA    E      79      T     110          4.557
LGA    Q      80      D     111           -
LGA    L      81      S     112           -
LGA    -       -      T     113           -
LGA    -       -      T     114           -
LGA    -       -      G     115           -
LGA    -       -      W     116           -
LGA    -       -      L     117           -
LGA    -       -      L     118           -
LGA    V      82      E     119           #
LGA    D      83      -       -           -
LGA    R      84      -       -           -
LGA    L      85      A     120           #
LGA    D      86      A     121           -
LGA    Q      87      V     122           -
LGA    S      88      -       -           -
LGA    W      89      H     123          3.047
LGA    Q      90      L     124           -
LGA    Y      91      Y     125           -
LGA    -       -      H     126           -
LGA    Y      92      H     127          2.629
LGA    Q      93      R     128          4.132
LGA    D      94      S     129          5.226
LGA    R      95      Q     130          3.387
LGA    L      96      L     131          1.134
LGA    M      97      L     132          2.398
LGA    A      98      D     133          2.523
LGA    D      99      Y     134          3.180
LGA    F     100      L     135          3.459
LGA    S     101      N     136          1.303
LGA    -       -      L     137           -
LGA    -       -      L     138           -
LGA    T     102      G     139          3.386
LGA    E     103      Y     140          1.784
LGA    T     104      D     141          2.335
LGA    T     105      I     142          2.241
LGA    Y     106      K     143          5.392
LGA    -       -      L     144           -
LGA    -       -      D     145           -
LGA    W     107      L     146          3.735
LGA    G     108      F     147           #
LGA    V     109      -       -           -
LGA    T     110      -       -           -
LGA    D     111      -       -           -
LGA    S     112      -       -           -
LGA    T     113      -       -           -
LGA    T     114      -       -           -
LGA    G     115      -       -           -
LGA    W     116      -       -           -
LGA    L     117      -       -           -
LGA    L     118      -       -           -
LGA    E     119      -       -           -
LGA    A     120      -       -           -
LGA    A     121      -       -           -
LGA    V     122      -       -           -
LGA    H     123      -       -           -
LGA    L     124      -       -           -
LGA    Y     125      -       -           -
LGA    H     126      -       -           -
LGA    H     127      -       -           -
LGA    R     128      -       -           -
LGA    S     129      -       -           -
LGA    Q     130      -       -           -
LGA    L     131      -       -           -
LGA    L     132      -       -           -
LGA    D     133      -       -           -
LGA    Y     134      -       -           -
LGA    L     135      -       -           -
LGA    N     136      -       -           -
LGA    L     137      -       -           -
LGA    L     138      -       -           -
LGA    G     139      -       -           -
LGA    Y     140      -       -           -
LGA    D     141      -       -           -
LGA    I     142      -       -           -
LGA    K     143      -       -           -
LGA    L     144      -       -           -
LGA    D     145      -       -           -
LGA    L     146      -       -           -
LGA    F     147      -       -           -
LGA    E     148      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  148  147    5.0     50    3.07     8.00     20.568     1.576

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.366676 * X  +  -0.849462 * Y  +   0.379425 * Z  +   9.120039
  Y_new =  -0.835026 * X  +  -0.120668 * Y  +   0.536816 * Z  +  10.037667
  Z_new =  -0.410220 * X  +  -0.513668 * Y  +  -0.753568 * Z  + -11.958825 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.543291    0.598302  [ DEG:  -145.7198     34.2802 ]
  Theta =   0.422695    2.718897  [ DEG:    24.2187    155.7813 ]
  Phi   =  -1.157027    1.984565  [ DEG:   -66.2928    113.7072 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0369TS599_4                                  
REMARK     2: T0369.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0369TS599_4.T0369.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  148  147   5.0   50   3.07    8.00  20.568
REMARK  ---------------------------------------------------------- 
MOLECULE T0369TS599_4
PFRMAT TS                                                                       
TARGET T0369                                                                    
MODEL  4                                                                        
PARENT N/A                                                                      
ATOM      1  CA  MET     1      20.718  29.804 -17.580  1.00  0.00              
ATOM      2  CA  THR     2      20.197  32.249 -14.205  1.00  0.00              
ATOM      3  CA  ASP     3      19.148  32.748 -10.170  1.00  0.00              
ATOM      4  CA  TRP     4      15.712  30.799 -10.686  1.00  0.00              
ATOM      5  CA  GLN     5      17.527  27.996 -12.532  1.00  0.00              
ATOM      6  CA  GLN     6      20.155  27.707  -9.777  1.00  0.00              
ATOM      7  CA  ALA     7      17.542  27.563  -6.994  1.00  0.00              
ATOM      8  CA  LEU     8      15.475  24.848  -8.723  1.00  0.00              
ATOM      9  CA  ASP     9      18.503  22.615  -9.375  1.00  0.00              
ATOM     10  CA  ARG    10      19.537  22.995  -5.735  1.00  0.00              
ATOM     11  CA  HIS    11      16.102  22.101  -4.395  1.00  0.00              
ATOM     12  CA  VAL    12      15.787  18.984  -6.597  1.00  0.00              
ATOM     13  CA  GLY    13      19.147  17.601  -5.496  1.00  0.00              
ATOM     14  CA  VAL    14      18.523  18.023  -1.742  1.00  0.00              
ATOM     15  CA  GLY    15      14.943  16.738  -1.590  1.00  0.00              
ATOM     16  CA  VAL    16      15.664  13.544  -3.553  1.00  0.00              
ATOM     17  CA  ARG    17      18.787  12.582  -1.593  1.00  0.00              
ATOM     18  CA  THR    18      17.625  13.079   2.031  1.00  0.00              
ATOM     19  CA  THR    19      14.386  11.283   1.332  1.00  0.00              
ATOM     20  CA  ARG    20      16.111   8.267  -0.281  1.00  0.00              
ATOM     21  CA  ASP    21      18.564   7.969   2.593  1.00  0.00              
ATOM     22  CA  LEU    22      15.691   8.053   5.149  1.00  0.00              
ATOM     23  CA  ILE    23      13.835   5.454   3.159  1.00  0.00              
ATOM     24  CA  ARG    24      16.926   3.188   3.009  1.00  0.00              
ATOM     25  CA  LEU    25      17.492   3.496   6.729  1.00  0.00              
ATOM     26  CA  ILE    26      13.838   2.703   7.533  1.00  0.00              
ATOM     27  CA  GLN    27      13.555  -0.215   5.137  1.00  0.00              
ATOM     28  CA  PRO    28      16.644  -2.351   5.851  1.00  0.00              
ATOM     29  CA  GLU    29      16.260  -1.818   9.575  1.00  0.00              
ATOM     30  CA  ASP    30      12.628  -2.707   9.770  1.00  0.00              
ATOM     31  CA  TRP    31      12.771  -6.120   7.962  1.00  0.00              
ATOM     32  CA  ASP    32       9.916  -7.448   5.898  1.00  0.00              
ATOM     33  CA  LYS    33      10.718  -9.567   2.788  1.00  0.00              
ATOM     34  CA  ARG    34       8.667  -9.034  -0.323  1.00  0.00              
ATOM     35  CA  PRO    35       9.416 -10.319  -3.784  1.00  0.00              
ATOM     36  CA  ILE    36       9.611  -7.243  -5.911  1.00  0.00              
ATOM     37  CA  SER    37       9.260  -7.708  -9.620  1.00  0.00              
ATOM     38  CA  GLY    38       5.946  -6.040 -10.189  1.00  0.00              
ATOM     39  CA  LYS    39       6.925  -3.312  -7.731  1.00  0.00              
ATOM     40  CA  ARG    40       9.919  -2.354  -9.870  1.00  0.00              
ATOM     41  CA  SER    41       7.565  -2.083 -12.888  1.00  0.00              
ATOM     42  CA  VAL    42       5.105   0.125 -10.976  1.00  0.00              
ATOM     43  CA  TYR    43       7.787   2.550  -9.738  1.00  0.00              
ATOM     44  CA  GLU    44       9.078   2.844 -13.288  1.00  0.00              
ATOM     45  CA  VAL    45       5.667   3.554 -14.761  1.00  0.00              
ATOM     46  CA  ALA    46       4.984   6.259 -12.120  1.00  0.00              
ATOM     47  CA  VAL    47       8.344   7.994 -12.547  1.00  0.00              
ATOM     48  CA  HIS    48       7.958   7.999 -16.369  1.00  0.00              
ATOM     49  CA  LEU    49       4.476   9.381 -16.271  1.00  0.00              
ATOM     50  CA  ALA    50       5.368  12.236 -13.894  1.00  0.00              
ATOM     51  CA  VAL    51       8.306  13.115 -16.177  1.00  0.00              
ATOM     52  CA  LEU    52       6.309  13.152 -19.428  1.00  0.00              
ATOM     53  CA  LEU    53       3.697  15.386 -17.840  1.00  0.00              
ATOM     54  CA  GLU    54       5.828  17.947 -15.992  1.00  0.00              
ATOM     55  CA  ALA    55       7.971  18.327 -19.113  1.00  0.00              
ATOM     56  CA  ASP    56       5.358  18.663 -21.832  1.00  0.00              
ATOM     57  CA  LEU    57       7.494  17.721 -24.774  1.00  0.00              
ATOM     58  CA  ARG    58      10.852  15.894 -24.840  1.00  0.00              
ATOM     59  CA  ILE    59      12.874  16.036 -28.100  1.00  0.00              
ATOM     60  CA  ALA    60      15.699  13.568 -28.398  1.00  0.00              
ATOM     61  CA  THR    61      18.359  13.923 -31.011  1.00  0.00              
ATOM     62  CA  GLY    62      18.642  10.451 -32.427  1.00  0.00              
ATOM     63  CA  ALA    63      14.962   9.516 -32.453  1.00  0.00              
ATOM     64  CA  THR    64      13.126   8.538 -35.658  1.00  0.00              
ATOM     65  CA  ALA    65      10.495  11.006 -36.841  1.00  0.00              
ATOM     66  CA  ASP    66       7.414   9.062 -35.700  1.00  0.00              
ATOM     67  CA  GLU    67       8.876   8.569 -32.254  1.00  0.00              
ATOM     68  CA  MET    68       9.693  12.223 -32.012  1.00  0.00              
ATOM     69  CA  ALA    69       6.260  13.392 -33.011  1.00  0.00              
ATOM     70  CA  GLN    70       4.670  11.107 -30.451  1.00  0.00              
ATOM     71  CA  PHE    71       6.953  12.289 -27.659  1.00  0.00              
ATOM     72  CA  TYR    72       6.240  15.965 -28.496  1.00  0.00              
ATOM     73  CA  ALA    73       2.446  15.623 -28.922  1.00  0.00              
ATOM     74  CA  VAL    74       1.986  13.777 -25.684  1.00  0.00              
ATOM     75  CA  PRO    75      -1.233  15.437 -24.385  1.00  0.00              
ATOM     76  CA  VAL    76      -1.746  13.614 -21.166  1.00  0.00              
ATOM     77  CA  LEU    77      -3.047  16.134 -18.670  1.00  0.00              
ATOM     78  CA  PRO    78      -1.631  16.377 -15.102  1.00  0.00              
ATOM     79  CA  GLU    79      -4.753  15.039 -13.501  1.00  0.00              
ATOM     80  CA  GLN    80      -4.917  12.036 -15.880  1.00  0.00              
ATOM     81  CA  LEU    81      -1.263  11.204 -15.316  1.00  0.00              
ATOM     82  CA  VAL    82      -1.740  11.360 -11.499  1.00  0.00              
ATOM     83  CA  ASP    83      -4.741   9.125 -11.794  1.00  0.00              
ATOM     84  CA  ARG    84      -2.908   6.503 -13.908  1.00  0.00              
ATOM     85  CA  LEU    85       0.034   6.448 -11.484  1.00  0.00              
ATOM     86  CA  ASP    86      -2.303   6.010  -8.508  1.00  0.00              
ATOM     87  CA  GLN    87      -4.218   3.145 -10.209  1.00  0.00              
ATOM     88  CA  SER    88      -0.971   1.355 -11.018  1.00  0.00              
ATOM     89  CA  TRP    89       0.236   1.734  -7.399  1.00  0.00              
ATOM     90  CA  GLN    90      -3.022   0.404  -5.945  1.00  0.00              
ATOM     91  CA  TYR    91      -2.860  -2.717  -8.163  1.00  0.00              
ATOM     92  CA  TYR    92       0.787  -3.294  -7.232  1.00  0.00              
ATOM     93  CA  GLN    93       0.193  -2.900  -3.509  1.00  0.00              
ATOM     94  CA  ASP    94      -2.676  -5.437  -3.443  1.00  0.00              
ATOM     95  CA  ARG    95      -0.673  -8.049  -5.373  1.00  0.00              
ATOM     96  CA  LEU    96       2.313  -7.693  -3.118  1.00  0.00              
ATOM     97  CA  MET    97       0.230  -8.019   0.025  1.00  0.00              
ATOM     98  CA  ALA    98      -1.477 -11.180  -1.290  1.00  0.00              
ATOM     99  CA  ASP    99       1.785 -12.892  -2.284  1.00  0.00              
ATOM    100  CA  PHE   100       3.413 -11.838   1.001  1.00  0.00              
ATOM    101  CA  SER   101       0.526 -13.316   3.070  1.00  0.00              
ATOM    102  CA  THR   102       0.470 -16.743   1.407  1.00  0.00              
ATOM    103  CA  GLU   103       4.233 -16.965   1.927  1.00  0.00              
ATOM    104  CA  THR   104       4.810 -15.495   5.401  1.00  0.00              
ATOM    105  CA  THR   105       6.694 -12.366   4.350  1.00  0.00              
ATOM    106  CA  TYR   106       5.177  -9.055   5.339  1.00  0.00              
ATOM    107  CA  TRP   107       6.651  -6.087   3.582  1.00  0.00              
ATOM    108  CA  GLY   108       5.065  -2.706   4.072  1.00  0.00              
ATOM    109  CA  VAL   109       7.028  -0.716   1.464  1.00  0.00              
ATOM    110  CA  THR   110       6.166   2.879   2.101  1.00  0.00              
ATOM    111  CA  ASP   111       7.138   5.133  -0.872  1.00  0.00              
ATOM    112  CA  SER   112       8.632   8.200   0.743  1.00  0.00              
ATOM    113  CA  THR   113      11.600   8.844  -1.552  1.00  0.00              
ATOM    114  CA  THR   114       9.804   8.336  -4.879  1.00  0.00              
ATOM    115  CA  GLY   115       6.843  10.616  -4.037  1.00  0.00              
ATOM    116  CA  TRP   116       9.079  13.313  -2.687  1.00  0.00              
ATOM    117  CA  LEU   117      11.266  13.484  -5.756  1.00  0.00              
ATOM    118  CA  LEU   118       8.324  13.754  -8.166  1.00  0.00              
ATOM    119  CA  GLU   119       6.530  16.484  -6.164  1.00  0.00              
ATOM    120  CA  ALA   120       9.644  18.583  -5.782  1.00  0.00              
ATOM    121  CA  ALA   121      10.336  18.322  -9.507  1.00  0.00              
ATOM    122  CA  VAL   122       6.813  19.468 -10.232  1.00  0.00              
ATOM    123  CA  HIS   123       7.004  22.462  -7.893  1.00  0.00              
ATOM    124  CA  LEU   124      10.413  23.567  -9.314  1.00  0.00              
ATOM    125  CA  TYR   125       9.441  23.252 -12.926  1.00  0.00              
ATOM    126  CA  HIS   126       6.302  25.273 -12.394  1.00  0.00              
ATOM    127  CA  HIS   127       7.323  28.156 -10.210  1.00  0.00              
ATOM    128  CA  ARG   128      10.039  29.862 -11.934  1.00  0.00              
ATOM    129  CA  SER   129       8.392  30.967 -15.224  1.00  0.00              
ATOM    130  CA  GLN   130      11.871  31.539 -16.682  1.00  0.00              
ATOM    131  CA  LEU   131      13.200  28.088 -15.694  1.00  0.00              
ATOM    132  CA  LEU   132      10.202  26.221 -17.215  1.00  0.00              
ATOM    133  CA  ASP   133      10.544  28.194 -20.468  1.00  0.00              
ATOM    134  CA  TYR   134      14.256  27.343 -20.608  1.00  0.00              
ATOM    135  CA  LEU   135      13.529  23.667 -20.015  1.00  0.00              
ATOM    136  CA  ASN   136      10.875  23.663 -22.761  1.00  0.00              
ATOM    137  CA  LEU   137      13.222  25.298 -25.209  1.00  0.00              
ATOM    138  CA  LEU   138      15.975  22.752 -24.450  1.00  0.00              
ATOM    139  CA  GLY   139      13.525  19.876 -24.904  1.00  0.00              
ATOM    140  CA  TYR   140      12.162  21.149 -28.230  1.00  0.00              
ATOM    141  CA  ASP   141      15.673  21.526 -29.684  1.00  0.00              
ATOM    142  CA  ILE   142      17.364  18.118 -29.575  1.00  0.00              
ATOM    143  CA  LYS   143      19.537  18.432 -32.647  1.00  0.00              
ATOM    144  CA  LEU   144      18.786  15.594 -35.010  1.00  0.00              
ATOM    145  CA  ASP   145      18.599  16.519 -38.735  1.00  0.00              
ATOM    146  CA  LEU   146      20.491  13.168 -40.181  1.00  0.00              
ATOM    147  CA  PHE   147      22.214   9.883 -41.844  1.00  0.00              
ATOM    148  CA  GLU   148      22.174  12.875 -38.895  1.00  0.00              
TER                                                                             
END
