
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms   17 (   85),  selected   17 , name T0381TS102_4-D1
# Molecule2: number of CA atoms   61 (  477),  selected   61 , name T0381_D1.pdb
# PARAMETERS: T0381TS102_4-D1.T0381_D1.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    T      46      V      17          1.277
LGA    D      47      Q      18          1.103
LGA    L      48      S      19          1.400
LGA    T      49      L      20          1.406
LGA    R      50      A      21          0.695
LGA    A      51      R      22          0.668
LGA    A      53      G      23          1.241
LGA    R      54      L      24          1.526
LGA    R      55      A      25          1.322
LGA    F      56      V      26          1.231
LGA    L      57      I      27          0.661
LGA    L      58      R      28          0.766
LGA    T      59      C      29          1.049
LGA    L      60      F      30          2.132
LGA    V      61      D      31          3.871
LGA    E      62      H      32          4.399
LGA    -       -      R      33           -
LGA    -       -      N      34           -
LGA    L      63      Q      35          2.394
LGA    -       -      R      36           -
LGA    -       -      R      37           -
LGA    -       -      T      38           -
LGA    -       -      L      39           -
LGA    -       -      S      40           -
LGA    -       -      D      41           -
LGA    -       -      V      42           -
LGA    -       -      A      43           -
LGA    -       -      R      44           -
LGA    -       -      A      45           -
LGA    -       -      T      46           -
LGA    -       -      D      47           -
LGA    -       -      L      48           -
LGA    -       -      T      49           -
LGA    -       -      R      50           -
LGA    -       -      A      51           -
LGA    -       -      T      52           -
LGA    -       -      A      53           -
LGA    -       -      R      54           -
LGA    -       -      R      55           -
LGA    -       -      F      56           -
LGA    -       -      L      57           -
LGA    -       -      L      58           -
LGA    -       -      T      59           -
LGA    -       -      L      60           -
LGA    -       -      V      61           -
LGA    -       -      E      62           -
LGA    -       -      L      63           -
LGA    -       -      G      64           -
LGA    -       -      Y      65           -
LGA    -       -      V      66           -
LGA    -       -      A      67           -
LGA    -       -      T      68           -
LGA    -       -      D      69           -
LGA    -       -      G      70           -
LGA    -       -      S      71           -
LGA    -       -      A      72           -
LGA    -       -      F      73           -
LGA    -       -      W      74           -
LGA    -       -      L      75           -
LGA    -       -      T      76           -
LGA    -       -      P      77           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)   17   61    5.0     17    1.90     0.00     25.971     0.849

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.878760 * X  +   0.469380 * Y  +  -0.086393 * Z  +  64.479980
  Y_new =  -0.445022 * X  +  -0.740452 * Y  +   0.503672 * Z  +  95.595375
  Z_new =   0.172444 * X  +   0.481054 * Y  +   0.859564 * Z  +   1.447359 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =   0.510221   -2.631372  [ DEG:    29.2335   -150.7665 ]
  Theta =  -0.173310   -2.968283  [ DEG:    -9.9299   -170.0701 ]
  Phi   =  -2.672822    0.468771  [ DEG:  -153.1414     26.8586 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0381TS102_4-D1                               
REMARK     2: T0381_D1.pdb                                  
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0381TS102_4-D1.T0381_D1.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:   17   61   5.0   17   1.90    0.00  25.971
REMARK  ---------------------------------------------------------- 
MOLECULE T0381TS102_4-D1
PFRMAT TS
TARGET T0381
MODEL 4
PARENT 1ysp_A
ATOM      1  N   THR    46      10.318  54.400  35.292  1.00  1.00
ATOM      2  CA  THR    46      10.227  55.805  34.780  1.00  1.00
ATOM      3  C   THR    46       9.345  55.985  33.540  1.00  1.00
ATOM      4  O   THR    46       9.218  55.093  32.683  1.00  1.00
ATOM      5  CB  THR    46      11.618  56.393  34.516  1.00  1.00
ATOM      6  N   ASP    47       8.771  57.182  33.475  1.00  1.00
ATOM      7  CA  ASP    47       7.859  57.632  32.449  1.00  1.00
ATOM      8  C   ASP    47       8.522  57.802  31.078  1.00  1.00
ATOM      9  O   ASP    47       7.900  57.480  30.081  1.00  1.00
ATOM     10  CB  ASP    47       7.235  58.964  32.877  1.00  1.00
ATOM     11  N   LEU    48       9.750  58.323  31.032  1.00  1.00
ATOM     12  CA  LEU    48      10.482  58.463  29.752  1.00  1.00
ATOM     13  C   LEU    48      10.609  57.109  29.050  1.00  1.00
ATOM     14  O   LEU    48      10.346  57.000  27.850  1.00  1.00
ATOM     15  CB  LEU    48      11.873  59.126  29.946  1.00  1.00
ATOM     16  N   THR    49      11.014  56.087  29.792  1.00  1.00
ATOM     17  CA  THR    49      11.244  54.751  29.216  1.00  1.00
ATOM     18  C   THR    49       9.890  54.126  28.806  1.00  1.00
ATOM     19  O   THR    49       9.772  53.497  27.754  1.00  1.00
ATOM     20  CB  THR    49      12.146  53.862  30.132  1.00  1.00
ATOM     21  N   ARG    50       8.861  54.331  29.624  1.00  1.00
ATOM     22  CA  ARG    50       7.542  53.778  29.273  1.00  1.00
ATOM     23  C   ARG    50       6.996  54.356  27.955  1.00  1.00
ATOM     24  O   ARG    50       6.527  53.608  27.087  1.00  1.00
ATOM     25  CB  ARG    50       6.557  53.980  30.420  1.00  1.00
ATOM     26  N   ALA    51       7.133  55.673  27.771  1.00  1.00
ATOM     27  CA  ALA    51       6.645  56.327  26.522  1.00  1.00
ATOM     28  C   ALA    51       7.532  55.957  25.364  1.00  1.00
ATOM     29  O   ALA    51       7.047  55.794  24.231  1.00  1.00
ATOM     30  CB  ALA    51       6.650  57.848  26.626  1.00  1.00
ATOM     31  N   ALA    53       8.842  55.936  25.627  1.00  1.00
ATOM     32  CA  ALA    53       9.814  55.595  24.592  1.00  1.00
ATOM     33  C   ALA    53       9.576  54.162  24.137  1.00  1.00
ATOM     34  O   ALA    53       9.621  53.894  22.951  1.00  1.00
ATOM     35  CB  ALA    53      11.218  55.720  25.143  1.00  1.00
ATOM     36  N   ARG    54       9.324  53.255  25.085  1.00  1.00
ATOM     37  CA  ARG    54       9.168  51.839  24.762  1.00  1.00
ATOM     38  C   ARG    54       8.104  51.639  23.681  1.00  1.00
ATOM     39  O   ARG    54       8.314  50.845  22.723  1.00  1.00
ATOM     40  CB  ARG    54       8.836  51.011  26.022  1.00  1.00
ATOM     41  N   ARG    55       6.969  52.346  23.838  1.00  1.00
ATOM     42  CA  ARG    55       5.869  52.300  22.884  1.00  1.00
ATOM     43  C   ARG    55       6.244  52.802  21.485  1.00  1.00
ATOM     44  O   ARG    55       5.933  52.179  20.468  1.00  1.00
ATOM     45  CB  ARG    55       4.612  53.120  23.444  1.00  1.00
ATOM     46  N   PHE    56       6.925  53.940  21.448  1.00  1.00
ATOM     47  CA  PHE    56       7.276  54.545  20.176  1.00  1.00
ATOM     48  C   PHE    56       8.421  53.788  19.494  1.00  1.00
ATOM     49  O   PHE    56       8.479  53.726  18.241  1.00  1.00
ATOM     50  CB  PHE    56       7.616  56.031  20.371  1.00  1.00
ATOM     51  N   LEU    57       9.285  53.203  20.299  1.00  1.00
ATOM     52  CA  LEU    57      10.401  52.370  19.764  1.00  1.00
ATOM     53  C   LEU    57       9.880  51.065  19.160  1.00  1.00
ATOM     54  O   LEU    57      10.326  50.604  18.106  1.00  1.00
ATOM     55  CB  LEU    57      11.416  52.098  20.850  1.00  1.00
ATOM     56  N   LEU    58       8.913  50.447  19.848  1.00  1.00
ATOM     57  CA  LEU    58       8.271  49.252  19.277  1.00  1.00
ATOM     58  C   LEU    58       7.573  49.582  17.958  1.00  1.00
ATOM     59  O   LEU    58       7.696  48.815  16.991  1.00  1.00
ATOM     60  CB  LEU    58       7.359  48.541  20.300  1.00  1.00
ATOM     61  N   THR    59       6.937  50.756  17.882  1.00  1.00
ATOM     62  CA  THR    59       6.383  51.274  16.633  1.00  1.00
ATOM     63  C   THR    59       7.422  51.491  15.468  1.00  1.00
ATOM     64  O   THR    59       7.197  51.099  14.309  1.00  1.00
ATOM     65  CB  THR    59       5.540  52.518  16.904  1.00  1.00
ATOM     66  N   LEU    60       8.559  52.096  15.787  1.00  1.00
ATOM     67  CA  LEU    60       9.631  52.208  14.788  1.00  1.00
ATOM     68  C   LEU    60      10.151  50.838  14.351  1.00  1.00
ATOM     69  O   LEU    60      10.452  50.644  13.181  1.00  1.00
ATOM     70  CB  LEU    60      10.804  53.019  15.372  1.00  1.00
ATOM     71  N   VAL    61      10.290  49.906  15.278  1.00  1.00
ATOM     72  CA  VAL    61      10.759  48.563  14.949  1.00  1.00
ATOM     73  C   VAL    61       9.760  47.896  13.996  1.00  1.00
ATOM     74  O   VAL    61      10.148  47.357  12.949  1.00  1.00
ATOM     75  CB  VAL    61      10.973  47.735  16.198  1.00  1.00
ATOM     76  N   GLU    62       8.470  47.986  14.343  1.00  1.00
ATOM     77  CA  GLU    62       7.385  47.544  13.461  1.00  1.00
ATOM     78  C   GLU    62       7.472  48.171  12.065  1.00  1.00
ATOM     79  O   GLU    62       7.325  47.466  11.057  1.00  1.00
ATOM     80  CB  GLU    62       6.007  47.908  14.078  1.00  1.00
ATOM     81  N   LEU    63       7.662  49.489  11.996  1.00  1.00
ATOM     82  CA  LEU    63       7.670  50.162  10.688  1.00  1.00
ATOM     83  C   LEU    63       8.967  49.904   9.885  1.00  1.00
ATOM     84  O   LEU    63       8.950  49.943   8.649  1.00  1.00
ATOM     85  CB  LEU    63       7.436  51.661  10.822  1.00  1.00
TER
END
