
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  127 (  127),  selected  127 , name T0383TS168_3
# Molecule2: number of CA atoms  125 ( 1020),  selected  125 , name T0383.pdb
# PARAMETERS: T0383TS168_3.T0383.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    S       1      A       3           -
LGA    N       2      M       4           -
LGA    A       3      N       5           -
LGA    M       4      L       6           -
LGA    N       5      K       7           -
LGA    L       6      R       8           -
LGA    K       7      E       9           -
LGA    R       8      -       -           -
LGA    E       9      -       -           -
LGA    Q      10      -       -           -
LGA    E      11      -       -           -
LGA    F      12      -       -           -
LGA    V      13      -       -           -
LGA    S      14      -       -           -
LGA    Q      15      -       -           -
LGA    Y      16      -       -           -
LGA    H      17      -       -           -
LGA    F      18      -       -           -
LGA    D      19      -       -           -
LGA    A      20      -       -           -
LGA    R      21      -       -           -
LGA    N      22      -       -           -
LGA    F      23      -       -           -
LGA    E      24      -       -           -
LGA    W      25      Q      10          3.967
LGA    E      26      E      11           -
LGA    N      27      -       -           -
LGA    E      28      -       -           -
LGA    N      29      -       -           -
LGA    G      30      -       -           -
LGA    A      31      -       -           -
LGA    P      32      -       -           -
LGA    E      33      -       -           -
LGA    T      34      -       -           -
LGA    K      35      F      12           #
LGA    V      36      V      13          4.909
LGA    D      37      S      14          4.185
LGA    V      38      Q      15          2.426
LGA    N      39      Y      16          3.527
LGA    F      40      H      17          3.057
LGA    Q      41      F      18          3.405
LGA    L      42      D      19           #
LGA    L      43      A      20           #
LGA    Q      44      R      21          2.805
LGA    H      45      N      22           #
LGA    -       -      F      23           -
LGA    -       -      E      24           -
LGA    -       -      W      25           -
LGA    D      46      E      26          4.286
LGA    -       -      N      27           -
LGA    -       -      E      28           -
LGA    -       -      N      29           -
LGA    Q      47      G      30          5.147
LGA    E      48      A      31           #
LGA    N      49      P      32          2.470
LGA    Q      50      E      33          4.372
LGA    V      51      T      34          4.028
LGA    T      52      K      35           #
LGA    -       -      V      36           -
LGA    -       -      D      37           -
LGA    -       -      V      38           -
LGA    -       -      N      39           -
LGA    -       -      F      40           -
LGA    -       -      Q      41           -
LGA    -       -      L      42           -
LGA    -       -      L      43           -
LGA    -       -      Q      44           -
LGA    -       -      H      45           -
LGA    -       -      D      46           -
LGA    -       -      Q      47           -
LGA    -       -      E      48           -
LGA    -       -      N      49           -
LGA    -       -      Q      50           -
LGA    -       -      V      51           -
LGA    -       -      T      52           -
LGA    -       -      S      53           -
LGA    -       -      L      54           -
LGA    -       -      I      55           -
LGA    -       -      V      56           -
LGA    -       -      I      57           -
LGA    -       -      L      58           -
LGA    -       -      S      59           -
LGA    -       -      F      60           -
LGA    -       -      M      61           -
LGA    S      53      I      62          1.821
LGA    L      54      V      63           #
LGA    -       -      F      64           -
LGA    -       -      D      65           -
LGA    -       -      K      66           -
LGA    -       -      F      67           -
LGA    -       -      V      68           -
LGA    I      55      I      69          4.123
LGA    V      56      S      70          5.017
LGA    I      57      G      71          2.581
LGA    L      58      T      72          4.885
LGA    S      59      -       -           -
LGA    F      60      -       -           -
LGA    M      61      -       -           -
LGA    I      62      -       -           -
LGA    V      63      -       -           -
LGA    F      64      -       -           -
LGA    D      65      -       -           -
LGA    K      66      -       -           -
LGA    F      67      -       -           -
LGA    V      68      -       -           -
LGA    I      69      -       -           -
LGA    S      70      -       -           -
LGA    G      71      -       -           -
LGA    T      72      -       -           -
LGA    I      73      -       -           -
LGA    S      74      -       -           -
LGA    Q      75      -       -           -
LGA    V      76      -       -           -
LGA    N      77      I      73          1.430
LGA    H      78      S      74          3.784
LGA    I      79      Q      75           -
LGA    D      80      -       -           -
LGA    G      81      -       -           -
LGA    R      82      -       -           -
LGA    I      83      V      76           #
LGA    V      84      N      77           -
LGA    -       -      H      78           -
LGA    -       -      I      79           -
LGA    -       -      D      80           -
LGA    -       -      G      81           -
LGA    -       -      R      82           -
LGA    -       -      I      83           -
LGA    -       -      V      84           -
LGA    -       -      N      85           -
LGA    -       -      E      86           -
LGA    N      85      P      87           #
LGA    E      86      S      88          2.146
LGA    P      87      E      89          1.485
LGA    S      88      L      90          2.776
LGA    E      89      N      91           -
LGA    L      90      Q      92           -
LGA    N      91      E      93           -
LGA    Q      92      E      94          3.470
LGA    E      93      V      95          3.288
LGA    -       -      E      96           -
LGA    E      94      T      97          1.078
LGA    V      95      L      98          1.863
LGA    E      96      A      99          2.098
LGA    T      97      R     100          2.555
LGA    L      98      P     101          2.461
LGA    A      99      C     102          2.211
LGA    R     100      L     103          1.948
LGA    P     101      N     104          1.701
LGA    C     102      M     105          1.572
LGA    L     103      L     106          1.174
LGA    N     104      N     107          0.938
LGA    M     105      R     108          0.759
LGA    L     106      L     109          1.368
LGA    N     107      T     110          0.915
LGA    R     108      Y     111          0.234
LGA    L     109      E     112          1.440
LGA    T     110      V     113          1.247
LGA    Y     111      T     114          1.211
LGA    E     112      E     115          2.096
LGA    V     113      I     116          1.949
LGA    T     114      A     117          1.119
LGA    E     115      L     118          3.848
LGA    I     116      D     119          4.914
LGA    A     117      L     120           -
LGA    L     118      P     121           -
LGA    D     119      G     122           -
LGA    L     120      I     123           -
LGA    P     121      N     124           -
LGA    G     122      L     125           -
LGA    I     123      E     126           -
LGA    N     124      F     127           -
LGA    L     125      -       -           -
LGA    E     126      -       -           -
LGA    F     127      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  127  125    5.0     48    2.94    12.50     25.396     1.578

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.776644 * X  +   0.625854 * Y  +   0.071631 * Z  +  13.147020
  Y_new =   0.601794 * X  +   0.770740 * Y  +  -0.209293 * Z  +  24.495209
  Z_new =  -0.186196 * X  +  -0.119439 * Y  +  -0.975226 * Z  +   4.636230 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -3.019726    0.121867  [ DEG:  -173.0176      6.9824 ]
  Theta =   0.187289    2.954304  [ DEG:    10.7309    169.2691 ]
  Phi   =   2.482367   -0.659225  [ DEG:   142.2292    -37.7708 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0383TS168_3                                  
REMARK     2: T0383.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0383TS168_3.T0383.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  127  125   5.0   48   2.94   12.50  25.396
REMARK  ---------------------------------------------------------- 
MOLECULE T0383TS168_3
PFRMAT TS
TARGET T0383
MODEL 3
PARENT N/A
ATOM      1  CA  SER     1       0.978   5.919  -4.775  1.00 25.00           C
ATOM      2  CA  ASN     2      -0.283   9.331  -3.552  1.00 25.00           C
ATOM      3  CA  ALA     3       1.511  12.183  -5.278  1.00 25.00           C
ATOM      4  CA  MET     4       3.279  12.872  -2.015  1.00 25.00           C
ATOM      5  CA  ASN     5       4.887  15.601   0.153  1.00 25.00           C
ATOM      6  CA  LEU     6       7.441  17.307   2.490  1.00 25.00           C
ATOM      7  CA  LYS     7       9.960  16.821   5.352  1.00 25.00           C
ATOM      8  CA  ARG     8      11.536  20.265   5.944  1.00 25.00           C
ATOM      9  CA  GLU     9      14.856  22.065   6.158  1.00 25.00           C
ATOM     10  CA  GLN    10      18.279  22.523   4.548  1.00 25.00           C
ATOM     11  CA  GLU    11      21.194  24.547   5.988  1.00 25.00           C
ATOM     12  CA  PHE    12      19.501  24.587   9.424  1.00 25.00           C
ATOM     13  CA  VAL    13      18.991  20.796   9.243  1.00 25.00           C
ATOM     14  CA  SER    14      22.679  20.319   8.325  1.00 25.00           C
ATOM     15  CA  GLN    15      23.725  22.523  11.276  1.00 25.00           C
ATOM     16  CA  TYR    16      26.075  24.338   8.861  1.00 25.00           C
ATOM     17  CA  HIS    17      28.252  25.035  11.895  1.00 25.00           C
ATOM     18  CA  PHE    18      26.081  24.972  15.062  1.00 25.00           C
ATOM     19  CA  ASP    19      28.816  25.443  17.683  1.00 25.00           C
ATOM     20  CA  ALA    20      28.558  22.349  19.877  1.00 25.00           C
ATOM     21  CA  ARG    21      28.769  18.942  18.310  1.00 25.00           C
ATOM     22  CA  ASN    22      26.695  19.998  15.348  1.00 25.00           C
ATOM     23  CA  PHE    23      23.039  19.575  16.315  1.00 25.00           C
ATOM     24  CA  GLU    24      21.317  20.954  19.446  1.00 25.00           C
ATOM     25  CA  TRP    25      18.114  21.575  17.439  1.00 25.00           C
ATOM     26  CA  GLU    26      18.243  17.999  16.077  1.00 25.00           C
ATOM     27  CA  ASN    27      18.696  16.636  19.628  1.00 25.00           C
ATOM     28  CA  GLU    28      15.705  18.704  20.829  1.00 25.00           C
ATOM     29  CA  ASN    29      16.436  17.613  24.400  1.00 25.00           C
ATOM     30  CA  GLY    30      14.240  14.682  23.566  1.00 25.00           C
ATOM     31  CA  ALA    31      14.426  13.677  19.858  1.00 25.00           C
ATOM     32  CA  PRO    32      11.739  15.996  18.419  1.00 25.00           C
ATOM     33  CA  GLU    33      10.873  13.855  15.343  1.00 25.00           C
ATOM     34  CA  THR    34      10.459  14.909  11.741  1.00 25.00           C
ATOM     35  CA  LYS    35      10.056  18.389  13.363  1.00 25.00           C
ATOM     36  CA  VAL    36       8.590  19.363   9.955  1.00 25.00           C
ATOM     37  CA  ASP    37       6.017  20.076   7.326  1.00 25.00           C
ATOM     38  CA  VAL    38       7.003  22.051   4.176  1.00 25.00           C
ATOM     39  CA  ASN    39       7.482  22.514   0.432  1.00 25.00           C
ATOM     40  CA  PHE    40       6.725  26.214   0.889  1.00 25.00           C
ATOM     41  CA  GLN    41       6.611  26.195  -2.855  1.00 25.00           C
ATOM     42  CA  LEU    42       4.148  29.020  -3.392  1.00 25.00           C
ATOM     43  CA  LEU    43       5.069  30.456  -6.822  1.00 25.00           C
ATOM     44  CA  GLN    44       3.888  29.598 -10.353  1.00 25.00           C
ATOM     45  CA  HIS    45       0.918  31.363 -12.077  1.00 25.00           C
ATOM     46  CA  ASP    46      -1.057  30.683  -8.889  1.00 25.00           C
ATOM     47  CA  GLN    47      -3.675  32.076  -6.465  1.00 25.00           C
ATOM     48  CA  GLU    48      -1.059  34.432  -4.957  1.00 25.00           C
ATOM     49  CA  ASN    49      -0.073  35.621  -8.461  1.00 25.00           C
ATOM     50  CA  GLN    50       2.492  38.301  -9.311  1.00 25.00           C
ATOM     51  CA  VAL    51       2.927  38.810  -5.588  1.00 25.00           C
ATOM     52  CA  THR    52       5.603  36.092  -5.418  1.00 25.00           C
ATOM     53  CA  SER    53       6.393  33.556  -2.715  1.00 25.00           C
ATOM     54  CA  LEU    54       7.080  31.268   0.266  1.00 25.00           C
ATOM     55  CA  ILE    55      10.449  29.659   1.215  1.00 25.00           C
ATOM     56  CA  VAL    56       8.990  29.405   4.757  1.00 25.00           C
ATOM     57  CA  ILE    57       7.137  26.478   6.354  1.00 25.00           C
ATOM     58  CA  LEU    58       9.265  24.138   8.537  1.00 25.00           C
ATOM     59  CA  SER    59      10.152  23.688  12.207  1.00 25.00           C
ATOM     60  CA  PHE    60      13.472  22.188  11.083  1.00 25.00           C
ATOM     61  CA  MET    61      14.526  18.565  10.961  1.00 25.00           C
ATOM     62  CA  ILE    62      15.204  16.852   7.680  1.00 25.00           C
ATOM     63  CA  VAL    63      14.732  13.092   7.601  1.00 25.00           C
ATOM     64  CA  PHE    64      16.826  10.555   5.758  1.00 25.00           C
ATOM     65  CA  ASP    65      18.066   7.021   4.893  1.00 25.00           C
ATOM     66  CA  LYS    66      20.478   6.228   2.015  1.00 25.00           C
ATOM     67  CA  PHE    67      20.792   9.967   1.385  1.00 25.00           C
ATOM     68  CA  VAL    68      20.281  13.585   2.537  1.00 25.00           C
ATOM     69  CA  ILE    69      17.311  15.904   3.114  1.00 25.00           C
ATOM     70  CA  SER    70      13.765  14.620   2.918  1.00 25.00           C
ATOM     71  CA  GLY    71      12.615  16.859  -0.000  1.00 25.00           C
ATOM     72  CA  THR    72      14.542  19.870   1.279  1.00 25.00           C
ATOM     73  CA  ILE    73      12.955  23.307   0.870  1.00 25.00           C
ATOM     74  CA  SER    74      11.254  24.963   3.907  1.00 25.00           C
ATOM     75  CA  GLN    75      13.258  26.800   6.577  1.00 25.00           C
ATOM     76  CA  VAL    76      13.637  27.206  10.323  1.00 25.00           C
ATOM     77  CA  ASN    77      10.535  29.364  10.045  1.00 25.00           C
ATOM     78  CA  HIS    78       7.129  28.079  11.106  1.00 25.00           C
ATOM     79  CA  ILE    79       5.141  31.163  10.190  1.00 25.00           C
ATOM     80  CA  ASP    80       3.191  30.330  13.360  1.00 25.00           C
ATOM     81  CA  GLY    81       1.415  31.862  16.320  1.00 25.00           C
ATOM     82  CA  ARG    82       4.571  33.348  17.956  1.00 25.00           C
ATOM     83  CA  ILE    83       6.286  35.370  15.247  1.00 25.00           C
ATOM     84  CA  VAL    84       3.888  38.241  14.374  1.00 25.00           C
ATOM     85  CA  ASN    85       2.784  41.858  15.067  1.00 25.00           C
ATOM     86  CA  GLU    86       3.358  45.404  16.219  1.00 25.00           C
ATOM     87  CA  PRO    87       4.616  46.343  19.714  1.00 25.00           C
ATOM     88  CA  SER    88       7.699  45.385  21.663  1.00 25.00           C
ATOM     89  CA  GLU    89       8.230  41.967  23.203  1.00 25.00           C
ATOM     90  CA  LEU    90       8.205  40.032  19.910  1.00 25.00           C
ATOM     91  CA  ASN    91      11.430  37.969  20.145  1.00 25.00           C
ATOM     92  CA  GLN    92      13.179  40.533  17.900  1.00 25.00           C
ATOM     93  CA  GLU    93      15.360  42.041  15.137  1.00 25.00           C
ATOM     94  CA  GLU    94      17.993  39.317  15.694  1.00 25.00           C
ATOM     95  CA  VAL    95      15.282  36.619  15.492  1.00 25.00           C
ATOM     96  CA  GLU    96      13.974  38.145  12.231  1.00 25.00           C
ATOM     97  CA  THR    97      17.524  38.177  10.794  1.00 25.00           C
ATOM     98  CA  LEU    98      17.983  34.505  11.780  1.00 25.00           C
ATOM     99  CA  ALA    99      14.658  33.613  10.102  1.00 25.00           C
ATOM    100  CA  ARG   100      15.738  35.460   6.925  1.00 25.00           C
ATOM    101  CA  PRO   101      19.072  33.575   6.933  1.00 25.00           C
ATOM    102  CA  CYS   102      17.218  30.248   7.334  1.00 25.00           C
ATOM    103  CA  LEU   103      14.911  31.153   4.414  1.00 25.00           C
ATOM    104  CA  ASN   104      17.950  32.030   2.254  1.00 25.00           C
ATOM    105  CA  MET   105      19.585  28.685   3.152  1.00 25.00           C
ATOM    106  CA  LEU   106      16.363  26.834   2.226  1.00 25.00           C
ATOM    107  CA  ASN   107      16.230  28.687  -1.123  1.00 25.00           C
ATOM    108  CA  ARG   108      19.883  27.759  -1.808  1.00 25.00           C
ATOM    109  CA  LEU   109      19.130  24.094  -0.995  1.00 25.00           C
ATOM    110  CA  THR   110      16.123  24.159  -3.365  1.00 25.00           C
ATOM    111  CA  TYR   111      18.304  25.666  -6.129  1.00 25.00           C
ATOM    112  CA  GLU   112      20.937  22.943  -5.571  1.00 25.00           C
ATOM    113  CA  VAL   113      18.227  20.245  -5.774  1.00 25.00           C
ATOM    114  CA  THR   114      16.919  21.771  -9.034  1.00 25.00           C
ATOM    115  CA  GLU   115      20.469  21.803 -10.472  1.00 25.00           C
ATOM    116  CA  ILE   116      20.927  18.131  -9.485  1.00 25.00           C
ATOM    117  CA  ALA   117      17.602  17.239 -11.163  1.00 25.00           C
ATOM    118  CA  LEU   118      16.993  18.850 -14.560  1.00 25.00           C
ATOM    119  CA  ASP   119      20.547  18.350 -15.868  1.00 25.00           C
ATOM    120  CA  LEU   120      23.987  16.596 -15.878  1.00 25.00           C
ATOM    121  CA  PRO   121      23.223  13.023 -16.995  1.00 25.00           C
ATOM    122  CA  GLY   122      21.448  12.855 -20.377  1.00 25.00           C
ATOM    123  CA  ILE   123      18.529  11.001 -18.793  1.00 25.00           C
ATOM    124  CA  ASN   124      15.376   9.959 -20.649  1.00 25.00           C
ATOM    125  CA  LEU   125      11.699  10.073 -19.809  1.00 25.00           C
ATOM    126  CA  GLU   126       8.547  11.204 -21.518  1.00 25.00           C
ATOM    127  CA  PHE   127       7.506  13.941 -19.106  1.00 25.00           C
TER
END
