
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  127 (  127),  selected  127 , name T0383TS168_5
# Molecule2: number of CA atoms  125 ( 1020),  selected  125 , name T0383.pdb
# PARAMETERS: T0383TS168_5.T0383.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    S       1      A       3           -
LGA    N       2      M       4           -
LGA    A       3      N       5           -
LGA    M       4      L       6           -
LGA    N       5      K       7           -
LGA    L       6      R       8           -
LGA    K       7      E       9           -
LGA    -       -      Q      10           -
LGA    -       -      E      11           -
LGA    R       8      F      12          3.306
LGA    E       9      V      13          2.388
LGA    Q      10      -       -           -
LGA    E      11      -       -           -
LGA    F      12      -       -           -
LGA    V      13      -       -           -
LGA    S      14      -       -           -
LGA    Q      15      -       -           -
LGA    Y      16      -       -           -
LGA    H      17      -       -           -
LGA    F      18      -       -           -
LGA    D      19      -       -           -
LGA    A      20      -       -           -
LGA    R      21      -       -           -
LGA    N      22      -       -           -
LGA    F      23      -       -           -
LGA    E      24      -       -           -
LGA    W      25      -       -           -
LGA    E      26      -       -           -
LGA    N      27      -       -           -
LGA    E      28      -       -           -
LGA    N      29      -       -           -
LGA    G      30      -       -           -
LGA    A      31      -       -           -
LGA    P      32      -       -           -
LGA    E      33      -       -           -
LGA    T      34      -       -           -
LGA    K      35      -       -           -
LGA    V      36      -       -           -
LGA    D      37      -       -           -
LGA    V      38      S      14          4.694
LGA    N      39      Q      15           -
LGA    F      40      Y      16           -
LGA    -       -      H      17           -
LGA    -       -      F      18           -
LGA    -       -      D      19           -
LGA    -       -      A      20           -
LGA    -       -      R      21           -
LGA    -       -      N      22           -
LGA    -       -      F      23           -
LGA    -       -      E      24           -
LGA    -       -      W      25           -
LGA    -       -      E      26           -
LGA    -       -      N      27           -
LGA    -       -      E      28           -
LGA    -       -      N      29           -
LGA    -       -      G      30           -
LGA    -       -      A      31           -
LGA    -       -      P      32           -
LGA    -       -      E      33           -
LGA    -       -      T      34           -
LGA    Q      41      K      35           #
LGA    L      42      V      36          1.873
LGA    L      43      -       -           -
LGA    Q      44      -       -           -
LGA    H      45      -       -           -
LGA    D      46      -       -           -
LGA    Q      47      -       -           -
LGA    E      48      -       -           -
LGA    N      49      -       -           -
LGA    Q      50      -       -           -
LGA    V      51      -       -           -
LGA    T      52      -       -           -
LGA    S      53      D      37          2.758
LGA    L      54      V      38          2.774
LGA    I      55      N      39          3.157
LGA    V      56      F      40           #
LGA    I      57      Q      41           #
LGA    -       -      L      42           -
LGA    -       -      L      43           -
LGA    -       -      Q      44           -
LGA    -       -      H      45           -
LGA    -       -      D      46           -
LGA    -       -      Q      47           -
LGA    -       -      E      48           -
LGA    -       -      N      49           -
LGA    -       -      Q      50           -
LGA    -       -      V      51           -
LGA    -       -      T      52           -
LGA    -       -      S      53           -
LGA    -       -      L      54           -
LGA    -       -      I      55           -
LGA    -       -      V      56           -
LGA    L      58      I      57          4.925
LGA    S      59      L      58           -
LGA    F      60      S      59           -
LGA    M      61      F      60           -
LGA    I      62      M      61           -
LGA    V      63      I      62           -
LGA    F      64      V      63           -
LGA    D      65      F      64           -
LGA    K      66      D      65           -
LGA    F      67      K      66           -
LGA    V      68      F      67           -
LGA    I      69      V      68           -
LGA    S      70      I      69           -
LGA    -       -      S      70           -
LGA    G      71      G      71           #
LGA    T      72      T      72          3.257
LGA    I      73      I      73          1.159
LGA    S      74      S      74          2.548
LGA    Q      75      Q      75          2.275
LGA    V      76      V      76          4.120
LGA    N      77      N      77           -
LGA    H      78      H      78           -
LGA    I      79      -       -           -
LGA    D      80      -       -           -
LGA    G      81      -       -           -
LGA    R      82      -       -           -
LGA    I      83      -       -           -
LGA    V      84      I      79           #
LGA    N      85      D      80           -
LGA    E      86      G      81           -
LGA    P      87      -       -           -
LGA    S      88      -       -           -
LGA    E      89      R      82          4.136
LGA    L      90      I      83          1.244
LGA    N      91      V      84          4.153
LGA    -       -      N      85           -
LGA    -       -      E      86           -
LGA    -       -      P      87           -
LGA    -       -      S      88           -
LGA    Q      92      E      89          4.832
LGA    E      93      -       -           -
LGA    E      94      -       -           -
LGA    V      95      L      90          4.725
LGA    -       -      N      91           -
LGA    -       -      Q      92           -
LGA    E      96      E      93           #
LGA    T      97      E      94          1.678
LGA    L      98      -       -           -
LGA    A      99      V      95          3.215
LGA    R     100      E      96          2.448
LGA    P     101      T      97          1.434
LGA    C     102      L      98          2.434
LGA    L     103      A      99          1.995
LGA    N     104      R     100          2.299
LGA    M     105      P     101          2.038
LGA    L     106      C     102          1.606
LGA    N     107      L     103          1.437
LGA    R     108      N     104          1.063
LGA    L     109      M     105          0.872
LGA    T     110      L     106          0.594
LGA    Y     111      N     107          0.614
LGA    E     112      R     108          0.651
LGA    V     113      L     109          0.465
LGA    T     114      T     110          1.337
LGA    E     115      Y     111          1.873
LGA    I     116      E     112          1.764
LGA    A     117      V     113          1.226
LGA    L     118      T     114          1.547
LGA    D     119      E     115          1.668
LGA    L     120      I     116           -
LGA    P     121      A     117           -
LGA    G     122      -       -           -
LGA    I     123      -       -           -
LGA    N     124      L     118          4.971
LGA    L     125      D     119           -
LGA    E     126      L     120           -
LGA    F     127      P     121           -
LGA    -       -      G     122           -
LGA    -       -      I     123           -
LGA    -       -      N     124           -
LGA    -       -      L     125           -
LGA    -       -      E     126           -
LGA    -       -      F     127           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  127  125    5.0     41    2.71    14.63     23.009     1.457

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =  -0.834910 * X  +   0.365387 * Y  +   0.411604 * Z  +  10.470658
  Y_new =  -0.004235 * X  +   0.743559 * Y  +  -0.668657 * Z  +  29.436121
  Z_new =  -0.550370 * X  +  -0.560012 * Y  +  -0.619257 * Z  +  12.434651 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -2.406392    0.735201  [ DEG:  -137.8761     42.1239 ]
  Theta =   0.582808    2.558785  [ DEG:    33.3924    146.6076 ]
  Phi   =  -3.136521    0.005072  [ DEG:  -179.7094      0.2906 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0383TS168_5                                  
REMARK     2: T0383.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0383TS168_5.T0383.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  127  125   5.0   41   2.71   14.63  23.009
REMARK  ---------------------------------------------------------- 
MOLECULE T0383TS168_5
PFRMAT TS
TARGET T0383
MODEL 5
PARENT N/A
ATOM      1  CA  SER     1      -1.372  18.334  -3.412  1.00 25.00           C
ATOM      2  CA  ASN     2      -3.236  16.914  -0.414  1.00 25.00           C
ATOM      3  CA  ALA     3      -1.384  18.196   2.688  1.00 25.00           C
ATOM      4  CA  MET     4       1.528  19.895   4.406  1.00 25.00           C
ATOM      5  CA  ASN     5       1.519  20.815   8.102  1.00 25.00           C
ATOM      6  CA  LEU     6       3.430  24.048   8.847  1.00 25.00           C
ATOM      7  CA  LYS     7       5.592  22.194  11.361  1.00 25.00           C
ATOM      8  CA  ARG     8       9.163  23.356  12.169  1.00 25.00           C
ATOM      9  CA  GLU     9      12.720  24.271  11.128  1.00 25.00           C
ATOM     10  CA  GLN    10      14.479  26.783  13.374  1.00 25.00           C
ATOM     11  CA  GLU    11      17.772  28.739  13.410  1.00 25.00           C
ATOM     12  CA  PHE    12      17.128  29.802  17.033  1.00 25.00           C
ATOM     13  CA  VAL    13      16.417  26.164  18.000  1.00 25.00           C
ATOM     14  CA  SER    14      19.665  25.052  16.303  1.00 25.00           C
ATOM     15  CA  GLN    15      21.606  27.763  18.188  1.00 25.00           C
ATOM     16  CA  TYR    16      21.269  25.584  21.230  1.00 25.00           C
ATOM     17  CA  HIS    17      24.979  25.113  20.780  1.00 25.00           C
ATOM     18  CA  PHE    18      25.195  28.092  23.138  1.00 25.00           C
ATOM     19  CA  ASP    19      26.504  28.649  26.668  1.00 25.00           C
ATOM     20  CA  ALA    20      23.292  29.931  28.135  1.00 25.00           C
ATOM     21  CA  ARG    21      21.031  27.078  29.377  1.00 25.00           C
ATOM     22  CA  ASN    22      19.250  26.562  26.026  1.00 25.00           C
ATOM     23  CA  PHE    23      15.653  25.612  27.007  1.00 25.00           C
ATOM     24  CA  GLU    24      14.273  22.383  28.536  1.00 25.00           C
ATOM     25  CA  TRP    25      12.819  21.368  25.142  1.00 25.00           C
ATOM     26  CA  GLU    26      16.194  22.049  23.464  1.00 25.00           C
ATOM     27  CA  ASN    27      17.967  19.926  26.114  1.00 25.00           C
ATOM     28  CA  GLU    28      15.465  17.083  25.544  1.00 25.00           C
ATOM     29  CA  ASN    29      14.916  17.398  29.266  1.00 25.00           C
ATOM     30  CA  GLY    30      11.167  18.014  28.587  1.00 25.00           C
ATOM     31  CA  ALA    31       9.422  17.064  25.306  1.00 25.00           C
ATOM     32  CA  PRO    32       7.324  20.111  24.707  1.00 25.00           C
ATOM     33  CA  GLU    33       5.207  20.455  21.514  1.00 25.00           C
ATOM     34  CA  THR    34       8.277  20.833  19.304  1.00 25.00           C
ATOM     35  CA  LYS    35       6.027  20.464  16.258  1.00 25.00           C
ATOM     36  CA  VAL    36       5.653  24.188  16.123  1.00 25.00           C
ATOM     37  CA  ASP    37       3.534  26.461  13.961  1.00 25.00           C
ATOM     38  CA  VAL    38       6.084  27.583  11.330  1.00 25.00           C
ATOM     39  CA  ASN    39       5.964  30.250   8.596  1.00 25.00           C
ATOM     40  CA  PHE    40       8.372  32.899   7.152  1.00 25.00           C
ATOM     41  CA  GLN    41       5.505  33.437   4.699  1.00 25.00           C
ATOM     42  CA  LEU    42       6.147  36.305   2.279  1.00 25.00           C
ATOM     43  CA  LEU    43       2.410  36.429   1.706  1.00 25.00           C
ATOM     44  CA  GLN    44      -0.550  36.887  -0.662  1.00 25.00           C
ATOM     45  CA  HIS    45      -4.129  37.677  -1.626  1.00 25.00           C
ATOM     46  CA  ASP    46      -7.769  36.729  -0.950  1.00 25.00           C
ATOM     47  CA  GLN    47      -8.323  34.693   2.246  1.00 25.00           C
ATOM     48  CA  GLU    48      -5.939  37.000   4.159  1.00 25.00           C
ATOM     49  CA  ASN    49      -7.812  40.069   2.842  1.00 25.00           C
ATOM     50  CA  GLN    50      -4.307  41.319   1.847  1.00 25.00           C
ATOM     51  CA  VAL    51      -2.359  40.675   5.092  1.00 25.00           C
ATOM     52  CA  THR    52       1.313  41.582   4.596  1.00 25.00           C
ATOM     53  CA  SER    53       3.742  38.946   5.979  1.00 25.00           C
ATOM     54  CA  LEU    54       5.733  36.929   8.516  1.00 25.00           C
ATOM     55  CA  ILE    55       6.839  35.462  11.855  1.00 25.00           C
ATOM     56  CA  VAL    56       3.524  33.663  12.033  1.00 25.00           C
ATOM     57  CA  ILE    57       5.105  31.429  14.615  1.00 25.00           C
ATOM     58  CA  LEU    58       7.128  28.942  16.636  1.00 25.00           C
ATOM     59  CA  SER    59       8.026  27.461  19.987  1.00 25.00           C
ATOM     60  CA  PHE    60      11.746  27.650  19.038  1.00 25.00           C
ATOM     61  CA  MET    61      10.743  24.777  16.701  1.00 25.00           C
ATOM     62  CA  ILE    62      13.087  21.996  15.581  1.00 25.00           C
ATOM     63  CA  VAL    63      13.423  19.379  12.803  1.00 25.00           C
ATOM     64  CA  PHE    64      13.693  15.940  11.186  1.00 25.00           C
ATOM     65  CA  ASP    65      14.131  12.463   9.781  1.00 25.00           C
ATOM     66  CA  LYS    66      17.725  11.186   9.225  1.00 25.00           C
ATOM     67  CA  PHE    67      18.560  14.827   8.540  1.00 25.00           C
ATOM     68  CA  VAL    68      17.457  18.456   8.865  1.00 25.00           C
ATOM     69  CA  ILE    69      14.286  20.418   7.887  1.00 25.00           C
ATOM     70  CA  SER    70      10.702  19.338   8.603  1.00 25.00           C
ATOM     71  CA  GLY    71       9.422  22.577   7.115  1.00 25.00           C
ATOM     72  CA  THR    72       9.351  26.350   7.472  1.00 25.00           C
ATOM     73  CA  ILE    73      10.773  28.797   9.994  1.00 25.00           C
ATOM     74  CA  SER    74       9.692  31.346  12.569  1.00 25.00           C
ATOM     75  CA  GLN    75      11.784  31.385  15.757  1.00 25.00           C
ATOM     76  CA  VAL    76       9.608  32.925  18.433  1.00 25.00           C
ATOM     77  CA  ASN    77       7.620  35.838  16.884  1.00 25.00           C
ATOM     78  CA  HIS    78       4.584  34.407  18.646  1.00 25.00           C
ATOM     79  CA  ILE    79       1.215  34.417  16.800  1.00 25.00           C
ATOM     80  CA  ASP    80      -0.427  36.593  19.512  1.00 25.00           C
ATOM     81  CA  GLY    81      -2.812  35.599  22.260  1.00 25.00           C
ATOM     82  CA  ARG    82      -0.598  37.433  24.793  1.00 25.00           C
ATOM     83  CA  ILE    83       2.821  38.505  23.617  1.00 25.00           C
ATOM     84  CA  VAL    84       3.652  38.871  27.294  1.00 25.00           C
ATOM     85  CA  ASN    85       1.657  41.315  29.449  1.00 25.00           C
ATOM     86  CA  GLU    86       0.031  44.669  30.357  1.00 25.00           C
ATOM     87  CA  PRO    87       2.401  45.084  33.336  1.00 25.00           C
ATOM     88  CA  SER    88       6.028  44.169  34.043  1.00 25.00           C
ATOM     89  CA  GLU    89       8.790  42.287  32.191  1.00 25.00           C
ATOM     90  CA  LEU    90       7.742  41.681  28.525  1.00 25.00           C
ATOM     91  CA  ASN    91       9.847  44.686  27.464  1.00 25.00           C
ATOM     92  CA  GLN    92       8.497  46.713  24.517  1.00 25.00           C
ATOM     93  CA  GLU    93      11.676  47.817  22.689  1.00 25.00           C
ATOM     94  CA  GLU    94      13.491  44.665  23.890  1.00 25.00           C
ATOM     95  CA  VAL    95      10.581  42.496  22.669  1.00 25.00           C
ATOM     96  CA  GLU    96      10.676  44.241  19.262  1.00 25.00           C
ATOM     97  CA  THR    97      14.452  43.644  19.035  1.00 25.00           C
ATOM     98  CA  LEU    98      13.944  39.946  19.890  1.00 25.00           C
ATOM     99  CA  ALA    99      11.244  39.667  17.190  1.00 25.00           C
ATOM    100  CA  ARG   100      13.589  41.301  14.641  1.00 25.00           C
ATOM    101  CA  PRO   101      16.374  38.854  15.596  1.00 25.00           C
ATOM    102  CA  CYS   102      13.961  35.908  15.182  1.00 25.00           C
ATOM    103  CA  LEU   103      12.912  37.220  11.739  1.00 25.00           C
ATOM    104  CA  ASN   104      16.589  37.549  10.719  1.00 25.00           C
ATOM    105  CA  MET   105      17.259  33.963  11.884  1.00 25.00           C
ATOM    106  CA  LEU   106      14.249  32.719   9.869  1.00 25.00           C
ATOM    107  CA  ASN   107      15.523  34.576   6.773  1.00 25.00           C
ATOM    108  CA  ARG   108      18.990  33.016   7.232  1.00 25.00           C
ATOM    109  CA  LEU   109      17.412  29.539   7.538  1.00 25.00           C
ATOM    110  CA  THR   110      15.392  30.148   4.342  1.00 25.00           C
ATOM    111  CA  TYR   111      18.571  31.253   2.514  1.00 25.00           C
ATOM    112  CA  GLU   112      20.385  28.101   3.715  1.00 25.00           C
ATOM    113  CA  VAL   113      17.476  25.930   2.495  1.00 25.00           C
ATOM    114  CA  THR   114      17.571  27.675  -0.914  1.00 25.00           C
ATOM    115  CA  GLU   115      21.347  27.080  -1.140  1.00 25.00           C
ATOM    116  CA  ILE   116      20.839  23.381  -0.284  1.00 25.00           C
ATOM    117  CA  ALA   117      18.138  23.101  -2.986  1.00 25.00           C
ATOM    118  CA  LEU   118      17.356  24.173  -6.551  1.00 25.00           C
ATOM    119  CA  ASP   119      20.494  25.169  -8.455  1.00 25.00           C
ATOM    120  CA  LEU   120      18.617  27.813 -10.385  1.00 25.00           C
ATOM    121  CA  PRO   121      17.981  26.952 -13.989  1.00 25.00           C
ATOM    122  CA  GLY   122      14.886  24.659 -14.017  1.00 25.00           C
ATOM    123  CA  ILE   123      13.583  22.174 -11.510  1.00 25.00           C
ATOM    124  CA  ASN   124      15.483  19.241 -13.001  1.00 25.00           C
ATOM    125  CA  LEU   125      13.093  16.286 -12.627  1.00 25.00           C
ATOM    126  CA  GLU   126      15.515  13.451 -12.862  1.00 25.00           C
ATOM    127  CA  PHE   127      16.040  12.067  -9.354  1.00 25.00           C
TER
END
