
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  127 (  127),  selected  127 , name T0383TS599_3
# Molecule2: number of CA atoms  125 ( 1020),  selected  125 , name T0383.pdb
# PARAMETERS: T0383TS599_3.T0383.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    -       -      A       3           -
LGA    -       -      M       4           -
LGA    -       -      N       5           -
LGA    -       -      L       6           -
LGA    -       -      K       7           -
LGA    -       -      R       8           -
LGA    -       -      E       9           -
LGA    -       -      Q      10           -
LGA    S       1      E      11          4.912
LGA    N       2      F      12          3.628
LGA    A       3      -       -           -
LGA    M       4      V      13           #
LGA    N       5      -       -           -
LGA    L       6      -       -           -
LGA    K       7      -       -           -
LGA    R       8      S      14           #
LGA    E       9      Q      15           -
LGA    Q      10      Y      16           -
LGA    E      11      H      17           -
LGA    F      12      -       -           -
LGA    V      13      -       -           -
LGA    S      14      -       -           -
LGA    Q      15      -       -           -
LGA    Y      16      -       -           -
LGA    H      17      -       -           -
LGA    F      18      -       -           -
LGA    D      19      -       -           -
LGA    A      20      -       -           -
LGA    R      21      -       -           -
LGA    N      22      -       -           -
LGA    F      23      -       -           -
LGA    E      24      -       -           -
LGA    W      25      -       -           -
LGA    E      26      -       -           -
LGA    N      27      -       -           -
LGA    E      28      -       -           -
LGA    N      29      -       -           -
LGA    G      30      -       -           -
LGA    A      31      -       -           -
LGA    P      32      -       -           -
LGA    E      33      -       -           -
LGA    T      34      -       -           -
LGA    K      35      -       -           -
LGA    V      36      -       -           -
LGA    D      37      F      18           #
LGA    V      38      D      19          4.626
LGA    N      39      A      20          0.878
LGA    F      40      R      21          1.023
LGA    Q      41      N      22          3.857
LGA    L      42      F      23           #
LGA    -       -      E      24           -
LGA    -       -      W      25           -
LGA    L      43      E      26          3.558
LGA    -       -      N      27           -
LGA    Q      44      E      28          2.946
LGA    H      45      N      29          5.299
LGA    D      46      G      30           #
LGA    Q      47      -       -           -
LGA    E      48      -       -           -
LGA    N      49      -       -           -
LGA    Q      50      -       -           -
LGA    V      51      -       -           -
LGA    T      52      -       -           -
LGA    S      53      A      31          3.466
LGA    L      54      P      32          1.650
LGA    I      55      E      33           #
LGA    -       -      T      34           -
LGA    -       -      K      35           -
LGA    -       -      V      36           -
LGA    -       -      D      37           -
LGA    -       -      V      38           -
LGA    -       -      N      39           -
LGA    -       -      F      40           -
LGA    -       -      Q      41           -
LGA    -       -      L      42           -
LGA    -       -      L      43           -
LGA    -       -      Q      44           -
LGA    -       -      H      45           -
LGA    -       -      D      46           -
LGA    -       -      Q      47           -
LGA    -       -      E      48           -
LGA    -       -      N      49           -
LGA    -       -      Q      50           -
LGA    -       -      V      51           -
LGA    -       -      T      52           -
LGA    -       -      S      53           -
LGA    -       -      L      54           -
LGA    -       -      I      55           -
LGA    -       -      V      56           -
LGA    -       -      I      57           -
LGA    -       -      L      58           -
LGA    -       -      S      59           -
LGA    -       -      F      60           -
LGA    -       -      M      61           -
LGA    -       -      I      62           -
LGA    V      56      V      63          4.894
LGA    -       -      F      64           -
LGA    -       -      D      65           -
LGA    -       -      K      66           -
LGA    -       -      F      67           -
LGA    I      57      V      68          3.704
LGA    L      58      I      69          4.460
LGA    S      59      -       -           -
LGA    F      60      -       -           -
LGA    M      61      -       -           -
LGA    I      62      -       -           -
LGA    V      63      -       -           -
LGA    F      64      -       -           -
LGA    D      65      -       -           -
LGA    K      66      -       -           -
LGA    F      67      -       -           -
LGA    V      68      -       -           -
LGA    I      69      -       -           -
LGA    S      70      -       -           -
LGA    G      71      -       -           -
LGA    T      72      -       -           -
LGA    I      73      -       -           -
LGA    S      74      S      70          1.752
LGA    Q      75      G      71          2.664
LGA    V      76      -       -           -
LGA    N      77      -       -           -
LGA    H      78      -       -           -
LGA    I      79      T      72          1.852
LGA    D      80      I      73          2.389
LGA    G      81      -       -           -
LGA    R      82      S      74          4.815
LGA    I      83      Q      75          4.051
LGA    V      84      V      76           #
LGA    N      85      N      77           -
LGA    E      86      H      78           -
LGA    P      87      I      79           -
LGA    -       -      D      80           -
LGA    -       -      G      81           -
LGA    -       -      R      82           -
LGA    -       -      I      83           -
LGA    -       -      V      84           -
LGA    -       -      N      85           -
LGA    -       -      E      86           -
LGA    S      88      P      87          5.696
LGA    E      89      S      88          4.321
LGA    L      90      E      89           -
LGA    -       -      L      90           -
LGA    -       -      N      91           -
LGA    -       -      Q      92           -
LGA    -       -      E      93           -
LGA    N      91      E      94          3.583
LGA    Q      92      V      95          3.513
LGA    -       -      E      96           -
LGA    E      93      T      97          1.880
LGA    E      94      L      98          1.408
LGA    V      95      A      99          1.839
LGA    E      96      R     100          1.973
LGA    T      97      P     101          2.023
LGA    L      98      C     102          1.991
LGA    A      99      L     103          1.645
LGA    R     100      N     104          1.481
LGA    P     101      M     105          1.336
LGA    C     102      L     106          0.484
LGA    L     103      N     107          0.762
LGA    N     104      R     108          1.117
LGA    M     105      L     109          0.906
LGA    L     106      T     110          0.454
LGA    N     107      Y     111          0.869
LGA    R     108      E     112          1.193
LGA    L     109      V     113          1.759
LGA    T     110      T     114          2.584
LGA    -       -      E     115           -
LGA    -       -      I     116           -
LGA    -       -      A     117           -
LGA    -       -      L     118           -
LGA    -       -      D     119           -
LGA    -       -      L     120           -
LGA    -       -      P     121           -
LGA    -       -      G     122           -
LGA    Y     111      I     123          4.192
LGA    E     112      N     124           -
LGA    V     113      L     125           #
LGA    T     114      E     126           -
LGA    E     115      F     127           -
LGA    I     116      -       -           -
LGA    A     117      -       -           -
LGA    L     118      -       -           -
LGA    D     119      -       -           -
LGA    L     120      -       -           -
LGA    P     121      -       -           -
LGA    G     122      -       -           -
LGA    I     123      -       -           -
LGA    N     124      -       -           -
LGA    L     125      -       -           -
LGA    E     126      -       -           -
LGA    F     127      -       -           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  127  125    5.0     43    3.02     6.98     22.807     1.378

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.405098 * X  +  -0.159142 * Y  +  -0.900316 * Z  +  11.780108
  Y_new =  -0.012698 * X  +  -0.985619 * Y  +   0.168506 * Z  +  25.694311
  Z_new =  -0.914185 * X  +  -0.056829 * Y  +  -0.401293 * Z  +   2.021765 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -3.000913    0.140680  [ DEG:  -171.9396      8.0604 ]
  Theta =   1.153493    1.988100  [ DEG:    66.0903    113.9097 ]
  Phi   =  -0.031335    3.110257  [ DEG:    -1.7954    178.2046 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0383TS599_3                                  
REMARK     2: T0383.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0383TS599_3.T0383.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  127  125   5.0   43   3.02    6.98  22.807
REMARK  ---------------------------------------------------------- 
MOLECULE T0383TS599_3
PFRMAT TS                                                                       
TARGET T0383                                                                    
MODEL  3                                                                        
PARENT N/A                                                                      
ATOM      1  CA  SER     1      11.122  23.330  14.857  1.00  0.00              
ATOM      2  CA  ASN     2      15.243  22.787  14.202  1.00  0.00              
ATOM      3  CA  ALA     3      17.914  20.320  13.742  1.00  0.00              
ATOM      4  CA  MET     4      14.477  22.004  13.401  1.00  0.00              
ATOM      5  CA  ASN     5      13.858  20.283  10.027  1.00  0.00              
ATOM      6  CA  LEU     6      14.785  16.830  11.358  1.00  0.00              
ATOM      7  CA  LYS     7      12.481  17.286  14.395  1.00  0.00              
ATOM      8  CA  ARG     8       9.476  18.384  12.288  1.00  0.00              
ATOM      9  CA  GLU     9       9.771  15.404   9.945  1.00  0.00              
ATOM     10  CA  GLN    10       9.788  12.386  12.288  1.00  0.00              
ATOM     11  CA  GLU    11       8.428   9.989   9.688  1.00  0.00              
ATOM     12  CA  PHE    12      11.033  10.951   7.055  1.00  0.00              
ATOM     13  CA  VAL    13      13.841  10.672   9.615  1.00  0.00              
ATOM     14  CA  SER    14      12.743   7.200  10.778  1.00  0.00              
ATOM     15  CA  GLN    15      12.745   5.854   7.175  1.00  0.00              
ATOM     16  CA  TYR    16      16.229   7.213   6.413  1.00  0.00              
ATOM     17  CA  HIS    17      17.909   6.991   9.841  1.00  0.00              
ATOM     18  CA  PHE    18      18.584  10.532  11.154  1.00  0.00              
ATOM     19  CA  ASP    19      19.316  11.276  14.761  1.00  0.00              
ATOM     20  CA  ALA    20      17.428  14.239  16.166  1.00  0.00              
ATOM     21  CA  ARG    21      19.889  15.442  18.769  1.00  0.00              
ATOM     22  CA  ASN    22      22.977  15.511  16.501  1.00  0.00              
ATOM     23  CA  PHE    23      21.884  16.301  12.994  1.00  0.00              
ATOM     24  CA  GLU    24      24.443  14.392  10.960  1.00  0.00              
ATOM     25  CA  TRP    25      23.117  12.294   8.088  1.00  0.00              
ATOM     26  CA  GLU    26      26.274  12.290   5.890  1.00  0.00              
ATOM     27  CA  ASN    27      26.054  10.446   2.606  1.00  0.00              
ATOM     28  CA  GLU    28      29.440   8.592   2.718  1.00  0.00              
ATOM     29  CA  ASN    29      31.260  10.464   0.037  1.00  0.00              
ATOM     30  CA  GLY    30      30.056  13.924   0.935  1.00  0.00              
ATOM     31  CA  ALA    31      27.993  14.668  -2.168  1.00  0.00              
ATOM     32  CA  PRO    32      24.346  15.109  -1.281  1.00  0.00              
ATOM     33  CA  GLU    33      22.607  14.909  -4.700  1.00  0.00              
ATOM     34  CA  THR    34      20.471  17.952  -4.989  1.00  0.00              
ATOM     35  CA  LYS    35      17.448  17.800  -7.125  1.00  0.00              
ATOM     36  CA  VAL    36      15.433  20.908  -7.419  1.00  0.00              
ATOM     37  CA  ASP    37      11.815  20.780  -8.476  1.00  0.00              
ATOM     38  CA  VAL    38       9.931  23.987  -9.106  1.00  0.00              
ATOM     39  CA  ASN    39       6.285  23.959  -9.282  1.00  0.00              
ATOM     40  CA  PHE    40       4.470  27.114 -10.261  1.00  0.00              
ATOM     41  CA  GLN    41       0.807  27.530  -9.436  1.00  0.00              
ATOM     42  CA  LEU    42      -1.117  30.234 -11.013  1.00  0.00              
ATOM     43  CA  LEU    43      -4.395  31.274  -9.558  1.00  0.00              
ATOM     44  CA  GLN    44      -6.995  32.519 -12.048  1.00  0.00              
ATOM     45  CA  HIS    45      -8.309  34.754 -14.783  1.00  0.00              
ATOM     46  CA  ASP    46      -8.402  38.063 -12.813  1.00  0.00              
ATOM     47  CA  GLN    47      -4.914  37.309 -11.520  1.00  0.00              
ATOM     48  CA  GLU    48      -3.434  37.135 -15.066  1.00  0.00              
ATOM     49  CA  ASN    49      -4.623  40.579 -16.004  1.00  0.00              
ATOM     50  CA  GLN    50      -3.667  42.346 -12.847  1.00  0.00              
ATOM     51  CA  VAL    51      -0.810  40.017 -11.688  1.00  0.00              
ATOM     52  CA  THR    52      -2.433  38.794  -8.522  1.00  0.00              
ATOM     53  CA  SER    53      -1.761  35.345  -7.195  1.00  0.00              
ATOM     54  CA  LEU    54       1.328  33.375  -8.109  1.00  0.00              
ATOM     55  CA  ILE    55       2.182  30.497  -5.993  1.00  0.00              
ATOM     56  CA  VAL    56       5.583  28.991  -6.143  1.00  0.00              
ATOM     57  CA  ILE    57       6.158  25.585  -4.829  1.00  0.00              
ATOM     58  CA  LEU    58       9.711  24.510  -4.315  1.00  0.00              
ATOM     59  CA  SER    59      10.485  20.922  -3.828  1.00  0.00              
ATOM     60  CA  PHE    60      14.051  20.058  -2.862  1.00  0.00              
ATOM     61  CA  MET    61      15.004  16.390  -3.044  1.00  0.00              
ATOM     62  CA  ILE    62      18.113  15.282  -1.316  1.00  0.00              
ATOM     63  CA  VAL    63      19.377  11.829  -2.063  1.00  0.00              
ATOM     64  CA  PHE    64      21.806  10.159   0.283  1.00  0.00              
ATOM     65  CA  ASP    65      22.981   6.639  -0.448  1.00  0.00              
ATOM     66  CA  LYS    66      19.630   4.857   0.157  1.00  0.00              
ATOM     67  CA  PHE    67      17.965   7.544   2.224  1.00  0.00              
ATOM     68  CA  VAL    68      15.657  10.100   0.595  1.00  0.00              
ATOM     69  CA  ILE    69      15.318  13.517   2.130  1.00  0.00              
ATOM     70  CA  SER    70      12.495  15.712   1.021  1.00  0.00              
ATOM     71  CA  GLY    71      12.581  19.419   1.659  1.00  0.00              
ATOM     72  CA  THR    72       9.619  21.514   0.780  1.00  0.00              
ATOM     73  CA  ILE    73      10.031  25.046   0.353  1.00  0.00              
ATOM     74  CA  SER    74       6.864  26.809   0.778  1.00  0.00              
ATOM     75  CA  GLN    75       6.206  24.734   3.918  1.00  0.00              
ATOM     76  CA  VAL    76       9.542  25.895   5.340  1.00  0.00              
ATOM     77  CA  ASN    77       8.636  29.511   4.662  1.00  0.00              
ATOM     78  CA  HIS    78       5.290  29.030   6.411  1.00  0.00              
ATOM     79  CA  ILE    79       7.049  27.452   9.421  1.00  0.00              
ATOM     80  CA  ASP    80       9.458  30.431   9.484  1.00  0.00              
ATOM     81  CA  GLY    81       6.492  32.841   9.818  1.00  0.00              
ATOM     82  CA  ARG    82       5.344  30.807  12.800  1.00  0.00              
ATOM     83  CA  ILE    83       8.757  30.741  14.595  1.00  0.00              
ATOM     84  CA  VAL    84       9.235  34.543  14.250  1.00  0.00              
ATOM     85  CA  ASN    85       5.759  35.448  15.572  1.00  0.00              
ATOM     86  CA  GLU    86       3.789  38.112  13.819  1.00  0.00              
ATOM     87  CA  PRO    87       6.235  40.618  12.459  1.00  0.00              
ATOM     88  CA  SER    88       5.690  43.301  15.026  1.00  0.00              
ATOM     89  CA  GLU    89       6.207  41.046  18.000  1.00  0.00              
ATOM     90  CA  LEU    90       9.435  39.430  16.850  1.00  0.00              
ATOM     91  CA  ASN    91      12.637  40.777  18.374  1.00  0.00              
ATOM     92  CA  GLN    92      15.426  41.871  16.073  1.00  0.00              
ATOM     93  CA  GLU    93      17.542  38.861  16.902  1.00  0.00              
ATOM     94  CA  GLU    94      14.662  36.463  16.153  1.00  0.00              
ATOM     95  CA  VAL    95      13.961  38.102  12.851  1.00  0.00              
ATOM     96  CA  GLU    96      17.563  37.964  11.793  1.00  0.00              
ATOM     97  CA  THR    97      17.801  34.242  12.686  1.00  0.00              
ATOM     98  CA  LEU    98      14.591  33.536  10.774  1.00  0.00              
ATOM     99  CA  ALA    99      15.419  35.407   7.537  1.00  0.00              
ATOM    100  CA  ARG   100      18.695  33.527   7.601  1.00  0.00              
ATOM    101  CA  PRO   101      17.617  29.898   8.005  1.00  0.00              
ATOM    102  CA  CYS   102      15.068  30.248   5.209  1.00  0.00              
ATOM    103  CA  LEU   103      17.549  31.878   2.878  1.00  0.00              
ATOM    104  CA  ASN   104      20.042  29.069   3.640  1.00  0.00              
ATOM    105  CA  MET   105      17.621  26.332   2.713  1.00  0.00              
ATOM    106  CA  LEU   106      16.657  28.042  -0.528  1.00  0.00              
ATOM    107  CA  ASN   107      20.365  28.485  -1.377  1.00  0.00              
ATOM    108  CA  ARG   108      21.063  24.757  -0.996  1.00  0.00              
ATOM    109  CA  LEU   109      18.355  24.131  -3.587  1.00  0.00              
ATOM    110  CA  THR   110      19.273  27.004  -5.984  1.00  0.00              
ATOM    111  CA  TYR   111      16.371  29.039  -7.312  1.00  0.00              
ATOM    112  CA  GLU   112      16.823  31.784  -9.934  1.00  0.00              
ATOM    113  CA  VAL   113      14.420  34.668  -9.333  1.00  0.00              
ATOM    114  CA  THR   114      14.551  36.584 -12.559  1.00  0.00              
ATOM    115  CA  GLU   115      11.775  39.105 -11.837  1.00  0.00              
ATOM    116  CA  ILE   116       9.945  38.528  -8.602  1.00  0.00              
ATOM    117  CA  ALA   117       6.411  39.998  -8.326  1.00  0.00              
ATOM    118  CA  LEU   118       4.614  39.753  -5.033  1.00  0.00              
ATOM    119  CA  ASP   119       1.039  38.896  -5.901  1.00  0.00              
ATOM    120  CA  LEU   120      -1.986  39.604  -3.845  1.00  0.00              
ATOM    121  CA  PRO   121      -2.163  36.641  -1.450  1.00  0.00              
ATOM    122  CA  GLY   122       1.583  37.049  -0.789  1.00  0.00              
ATOM    123  CA  ILE   123       3.426  34.502  -2.868  1.00  0.00              
ATOM    124  CA  ASN   124       4.973  35.574  -6.005  1.00  0.00              
ATOM    125  CA  LEU   125       7.575  33.539  -7.702  1.00  0.00              
ATOM    126  CA  GLU   126       9.499  34.853 -10.482  1.00  0.00              
ATOM    127  CA  PHE   127      11.931  33.103 -12.774  1.00  0.00              
TER                                                                             
END
