
#######################################################
#                                                     #
#                        LGA                          #
#                  ---------------                    #
#                                                     #
#               Local-Global Alignment                #
#        A Method for Finding 3-D Similarities        #
#               in Protein Structures                 #
#                                                     #
#                  --------------- 06/2006            #
#                                                     #
#      Adam Zemla (adamz@llnl.gov)                    #
#      Lawrence Livermore National Laboratory, CA     #
#                                                     #
#######################################################

# Molecule1: number of CA atoms  127 (  127),  selected  127 , name T0383TS599_5
# Molecule2: number of CA atoms  125 ( 1020),  selected  125 , name T0383.pdb
# PARAMETERS: T0383TS599_5.T0383.pdb  -4  -ie  -o1  -sia  -d:5  
# Search for Atom-Atom correspondence
# Structure alignment analysis 

#      Molecule1      Molecule2       DISTANCE
LGA    S       1      A       3           -
LGA    N       2      M       4           -
LGA    A       3      N       5           -
LGA    M       4      L       6           -
LGA    N       5      K       7           -
LGA    L       6      R       8           -
LGA    K       7      E       9           -
LGA    R       8      Q      10           -
LGA    E       9      E      11           -
LGA    Q      10      -       -           -
LGA    E      11      -       -           -
LGA    F      12      -       -           -
LGA    V      13      -       -           -
LGA    S      14      -       -           -
LGA    Q      15      -       -           -
LGA    Y      16      -       -           -
LGA    H      17      -       -           -
LGA    F      18      -       -           -
LGA    D      19      -       -           -
LGA    A      20      -       -           -
LGA    R      21      -       -           -
LGA    N      22      -       -           -
LGA    F      23      -       -           -
LGA    E      24      -       -           -
LGA    W      25      -       -           -
LGA    E      26      -       -           -
LGA    N      27      -       -           -
LGA    E      28      -       -           -
LGA    N      29      -       -           -
LGA    G      30      -       -           -
LGA    A      31      -       -           -
LGA    P      32      -       -           -
LGA    E      33      -       -           -
LGA    T      34      -       -           -
LGA    K      35      F      12           #
LGA    V      36      -       -           -
LGA    D      37      -       -           -
LGA    V      38      -       -           -
LGA    N      39      -       -           -
LGA    F      40      -       -           -
LGA    Q      41      -       -           -
LGA    L      42      -       -           -
LGA    L      43      -       -           -
LGA    Q      44      -       -           -
LGA    H      45      -       -           -
LGA    D      46      -       -           -
LGA    Q      47      -       -           -
LGA    E      48      -       -           -
LGA    N      49      -       -           -
LGA    Q      50      -       -           -
LGA    V      51      -       -           -
LGA    T      52      -       -           -
LGA    S      53      -       -           -
LGA    L      54      -       -           -
LGA    I      55      -       -           -
LGA    V      56      -       -           -
LGA    I      57      -       -           -
LGA    L      58      -       -           -
LGA    S      59      V      13          4.186
LGA    F      60      S      14          3.246
LGA    M      61      Q      15          2.563
LGA    -       -      Y      16           -
LGA    -       -      H      17           -
LGA    -       -      F      18           -
LGA    -       -      D      19           -
LGA    -       -      A      20           -
LGA    -       -      R      21           -
LGA    -       -      N      22           -
LGA    -       -      F      23           -
LGA    -       -      E      24           -
LGA    -       -      W      25           -
LGA    -       -      E      26           -
LGA    -       -      N      27           -
LGA    -       -      E      28           -
LGA    -       -      N      29           -
LGA    -       -      G      30           -
LGA    -       -      A      31           -
LGA    -       -      P      32           -
LGA    -       -      E      33           -
LGA    -       -      T      34           -
LGA    -       -      K      35           -
LGA    -       -      V      36           -
LGA    -       -      D      37           -
LGA    -       -      V      38           -
LGA    -       -      N      39           -
LGA    -       -      F      40           -
LGA    -       -      Q      41           -
LGA    -       -      L      42           -
LGA    -       -      L      43           -
LGA    -       -      Q      44           -
LGA    -       -      H      45           -
LGA    -       -      D      46           -
LGA    -       -      Q      47           -
LGA    -       -      E      48           -
LGA    -       -      N      49           -
LGA    -       -      Q      50           -
LGA    -       -      V      51           -
LGA    -       -      T      52           -
LGA    -       -      S      53           -
LGA    -       -      L      54           -
LGA    -       -      I      55           -
LGA    -       -      V      56           -
LGA    -       -      I      57           -
LGA    -       -      L      58           -
LGA    -       -      S      59           -
LGA    -       -      F      60           -
LGA    I      62      M      61           #
LGA    -       -      I      62           -
LGA    -       -      V      63           -
LGA    -       -      F      64           -
LGA    -       -      D      65           -
LGA    -       -      K      66           -
LGA    -       -      F      67           -
LGA    V      63      V      68          5.256
LGA    F      64      I      69          2.232
LGA    D      65      -       -           -
LGA    K      66      -       -           -
LGA    F      67      -       -           -
LGA    V      68      -       -           -
LGA    I      69      S      70           #
LGA    S      70      G      71          6.445
LGA    G      71      T      72          3.474
LGA    T      72      I      73          2.428
LGA    I      73      S      74          2.707
LGA    S      74      Q      75          4.592
LGA    Q      75      V      76          3.802
LGA    V      76      -       -           -
LGA    N      77      -       -           -
LGA    H      78      -       -           -
LGA    I      79      N      77          1.970
LGA    D      80      -       -           -
LGA    G      81      -       -           -
LGA    R      82      H      78          1.902
LGA    I      83      I      79          3.114
LGA    V      84      D      80           #
LGA    -       -      G      81           -
LGA    N      85      R      82          3.014
LGA    E      86      I      83          2.135
LGA    P      87      V      84          1.067
LGA    S      88      N      85          3.933
LGA    E      89      E      86           #
LGA    L      90      P      87           -
LGA    N      91      S      88           -
LGA    Q      92      E      89          4.418
LGA    E      93      -       -           -
LGA    E      94      L      90          5.363
LGA    V      95      N      91          3.800
LGA    E      96      Q      92          3.588
LGA    T      97      E      93          2.663
LGA    L      98      E      94          1.658
LGA    A      99      V      95          1.409
LGA    R     100      E      96          1.959
LGA    P     101      T      97          1.304
LGA    C     102      L      98          1.472
LGA    L     103      A      99          1.901
LGA    N     104      R     100          2.722
LGA    M     105      P     101          2.752
LGA    L     106      C     102          1.388
LGA    N     107      L     103          0.389
LGA    R     108      N     104          0.742
LGA    L     109      M     105          2.632
LGA    T     110      L     106          3.197
LGA    Y     111      N     107          2.608
LGA    E     112      R     108          3.010
LGA    -       -      L     109           -
LGA    V     113      T     110          2.639
LGA    T     114      Y     111          2.766
LGA    -       -      E     112           -
LGA    -       -      V     113           -
LGA    -       -      T     114           -
LGA    -       -      E     115           -
LGA    -       -      I     116           -
LGA    -       -      A     117           -
LGA    -       -      L     118           -
LGA    -       -      D     119           -
LGA    -       -      L     120           -
LGA    -       -      P     121           -
LGA    -       -      G     122           -
LGA    E     115      I     123          1.702
LGA    I     116      N     124           #
LGA    A     117      -       -           -
LGA    L     118      -       -           -
LGA    D     119      -       -           -
LGA    L     120      -       -           -
LGA    P     121      -       -           -
LGA    G     122      -       -           -
LGA    I     123      -       -           -
LGA    N     124      -       -           -
LGA    L     125      -       -           -
LGA    E     126      L     125          1.741
LGA    F     127      E     126          3.708
LGA    -       -      F     127           -

#              N1   N2   DIST      N    RMSD   Seq_Id      LGA_S     LGA_Q 
SUMMARY(LGA)  127  125    5.0     43    3.05     4.65     20.929     1.364

Unitary ROTATION matrix and the shift VECTOR superimpose MOLECULES  (1=>2)
  X_new =   0.748612 * X  +  -0.638805 * Y  +   0.177505 * Z  +   6.835722
  Y_new =  -0.290130 * X  +  -0.074898 * Y  +   0.954052 * Z  +  32.257874
  Z_new =  -0.596158 * X  +  -0.765714 * Y  +  -0.241406 * Z  +  10.988009 

Euler angles from the ROTATION matrix (XYZ convention, two solutions)
  Psi   =  -1.876202    1.265391  [ DEG:  -107.4984     72.5016 ]
  Theta =   0.638708    2.502885  [ DEG:    36.5952    143.4048 ]
  Phi   =  -0.369734    2.771859  [ DEG:   -21.1842    158.8158 ]
 
# END of job
REMARK  ---------------------------------------------------------- 
REMARK   Citing LGA: 
REMARK   Zemla A., LGA - a Method for Finding 3D Similarities in  
REMARK   Protein Structures, Nucleic Acids Research, 2003, V. 31, 
REMARK   No. 13, pp. 3370-3374. 
REMARK  ---------------------------------------------------------- 
REMARK   Superimposed MOLECULES (1=>2)   Output: 1 molecule      
REMARK     1: T0383TS599_5                                  
REMARK     2: T0383.pdb                                     
REMARK   Structure alignment analysis
REMARK   Search for Atom-Atom correspondence
REMARK   LGA parameters: T0383TS599_5.T0383.pdb -4 -ie -o1 -sia -d:5 
REMARK   #CA        N1   N2  DIST    N   RMSD  Seq_Id   LGA_S
REMARK   SUMMARY:  127  125   5.0   43   3.05    4.65  20.929
REMARK  ---------------------------------------------------------- 
MOLECULE T0383TS599_5
PFRMAT TS                                                                       
TARGET T0383                                                                    
MODEL  5                                                                        
PARENT N/A                                                                      
ATOM      1  CA  SER     1       4.113  39.402  10.393  1.00  0.00              
ATOM      2  CA  ASN     2       3.559  35.870  12.611  1.00  0.00              
ATOM      3  CA  ALA     3       1.204  33.763  15.392  1.00  0.00              
ATOM      4  CA  MET     4       1.237  36.113  18.125  1.00  0.00              
ATOM      5  CA  ASN     5       1.169  39.369  16.131  1.00  0.00              
ATOM      6  CA  LEU     6      -1.669  38.936  13.688  1.00  0.00              
ATOM      7  CA  LYS     7      -3.835  37.304  16.315  1.00  0.00              
ATOM      8  CA  ARG     8      -3.151  40.059  18.780  1.00  0.00              
ATOM      9  CA  GLU     9      -4.371  42.743  16.299  1.00  0.00              
ATOM     10  CA  GLN    10      -7.978  41.810  15.896  1.00  0.00              
ATOM     11  CA  GLU    11      -8.108  42.944  12.319  1.00  0.00              
ATOM     12  CA  PHE    12      -4.984  41.042  11.270  1.00  0.00              
ATOM     13  CA  VAL    13      -6.170  37.772  12.902  1.00  0.00              
ATOM     14  CA  SER    14      -9.652  38.031  11.312  1.00  0.00              
ATOM     15  CA  GLN    15      -8.136  38.844   7.932  1.00  0.00              
ATOM     16  CA  TYR    16      -5.953  35.744   7.702  1.00  0.00              
ATOM     17  CA  HIS    17      -7.943  33.035   9.522  1.00  0.00              
ATOM     18  CA  PHE    18      -5.677  30.895  11.554  1.00  0.00              
ATOM     19  CA  ASP    19      -6.318  28.090  13.820  1.00  0.00              
ATOM     20  CA  ALA    20      -3.832  27.818  16.683  1.00  0.00              
ATOM     21  CA  ARG    21      -3.790  23.987  16.987  1.00  0.00              
ATOM     22  CA  ASN    22      -2.503  23.135  20.406  1.00  0.00              
ATOM     23  CA  PHE    23      -1.055  19.596  20.302  1.00  0.00              
ATOM     24  CA  GLU    24      -0.823  18.738  24.001  1.00  0.00              
ATOM     25  CA  TRP    25       2.806  17.545  24.346  1.00  0.00              
ATOM     26  CA  GLU    26       2.828  16.669  27.882  1.00  0.00              
ATOM     27  CA  ASN    27       5.810  15.023  29.514  1.00  0.00              
ATOM     28  CA  GLU    28       4.030  12.750  32.075  1.00  0.00              
ATOM     29  CA  ASN    29       1.643  11.017  29.667  1.00  0.00              
ATOM     30  CA  GLY    30       4.619  10.238  27.365  1.00  0.00              
ATOM     31  CA  ALA    31       3.008  11.587  24.264  1.00  0.00              
ATOM     32  CA  PRO    32       4.966  14.404  22.587  1.00  0.00              
ATOM     33  CA  GLU    33       3.706  14.152  19.040  1.00  0.00              
ATOM     34  CA  THR    34       2.956  17.699  18.054  1.00  0.00              
ATOM     35  CA  LYS    35       4.282  17.845  14.526  1.00  0.00              
ATOM     36  CA  VAL    36       2.232  19.468  11.851  1.00  0.00              
ATOM     37  CA  ASP    37       3.716  19.856   8.431  1.00  0.00              
ATOM     38  CA  VAL    38       2.475  22.509   6.126  1.00  0.00              
ATOM     39  CA  ASN    39       3.664  22.748   2.587  1.00  0.00              
ATOM     40  CA  PHE    40       3.461  26.137   0.975  1.00  0.00              
ATOM     41  CA  GLN    41       4.070  27.022  -2.613  1.00  0.00              
ATOM     42  CA  LEU    42       5.437  30.493  -3.097  1.00  0.00              
ATOM     43  CA  LEU    43       4.387  32.725  -5.943  1.00  0.00              
ATOM     44  CA  GLN    44       5.400  36.259  -5.019  1.00  0.00              
ATOM     45  CA  HIS    45       2.658  38.213  -3.282  1.00  0.00              
ATOM     46  CA  ASP    46       0.841  35.241  -1.736  1.00  0.00              
ATOM     47  CA  GLN    47       3.552  33.251  -0.109  1.00  0.00              
ATOM     48  CA  GLU    48       4.980  36.290   1.640  1.00  0.00              
ATOM     49  CA  ASN    49       1.643  36.995   3.412  1.00  0.00              
ATOM     50  CA  GLN    50       0.736  33.474   4.332  1.00  0.00              
ATOM     51  CA  VAL    51       0.944  33.427   8.068  1.00  0.00              
ATOM     52  CA  THR    52      -2.169  31.714   9.247  1.00  0.00              
ATOM     53  CA  SER    53      -1.297  29.910  12.419  1.00  0.00              
ATOM     54  CA  LEU    54       1.477  28.124  14.287  1.00  0.00              
ATOM     55  CA  ILE    55      -0.002  25.763  16.782  1.00  0.00              
ATOM     56  CA  VAL    56       1.739  23.052  18.804  1.00  0.00              
ATOM     57  CA  ILE    57       4.772  22.497  16.543  1.00  0.00              
ATOM     58  CA  LEU    58       4.254  23.682  13.162  1.00  0.00              
ATOM     59  CA  SER    59       6.634  23.065  10.402  1.00  0.00              
ATOM     60  CA  PHE    60       6.305  25.003   7.339  1.00  0.00              
ATOM     61  CA  MET    61       7.971  24.265   4.188  1.00  0.00              
ATOM     62  CA  ILE    62       8.180  26.711   1.499  1.00  0.00              
ATOM     63  CA  VAL    63       8.781  25.823  -1.926  1.00  0.00              
ATOM     64  CA  PHE    64       9.657  28.322  -4.493  1.00  0.00              
ATOM     65  CA  ASP    65      10.519  27.222  -7.964  1.00  0.00              
ATOM     66  CA  LYS    66      13.781  25.434  -7.071  1.00  0.00              
ATOM     67  CA  PHE    67      14.591  27.188  -3.759  1.00  0.00              
ATOM     68  CA  VAL    68      13.712  25.528  -0.517  1.00  0.00              
ATOM     69  CA  ILE    69      12.872  27.634   2.543  1.00  0.00              
ATOM     70  CA  SER    70      12.207  26.004   5.861  1.00  0.00              
ATOM     71  CA  GLY    71      10.088  27.784   8.453  1.00  0.00              
ATOM     72  CA  THR    72       9.759  26.539  11.807  1.00  0.00              
ATOM     73  CA  ILE    73       7.278  27.952  13.916  1.00  0.00              
ATOM     74  CA  SER    74       7.878  27.160  17.354  1.00  0.00              
ATOM     75  CA  GLN    75      11.586  28.189  17.023  1.00  0.00              
ATOM     76  CA  VAL    76      10.738  31.622  15.716  1.00  0.00              
ATOM     77  CA  ASN    77       8.190  32.177  18.522  1.00  0.00              
ATOM     78  CA  HIS    78      10.561  31.106  21.323  1.00  0.00              
ATOM     79  CA  ILE    79      13.295  33.389  20.054  1.00  0.00              
ATOM     80  CA  ASP    80      10.774  36.262  19.860  1.00  0.00              
ATOM     81  CA  GLY    81       9.438  35.791  23.364  1.00  0.00              
ATOM     82  CA  ARG    82      12.923  35.686  24.859  1.00  0.00              
ATOM     83  CA  ILE    83      14.414  38.678  23.048  1.00  0.00              
ATOM     84  CA  VAL    84      11.300  40.798  23.863  1.00  0.00              
ATOM     85  CA  ASN    85      11.181  40.211  27.555  1.00  0.00              
ATOM     86  CA  GLU    86       7.594  40.323  28.310  1.00  0.00              
ATOM     87  CA  PRO    87       5.772  42.654  26.022  1.00  0.00              
ATOM     88  CA  SER    88       5.037  45.129  28.642  1.00  0.00              
ATOM     89  CA  GLU    89       8.599  45.917  29.506  1.00  0.00              
ATOM     90  CA  LEU    90       9.951  46.698  26.106  1.00  0.00              
ATOM     91  CA  ASN    91       9.807  50.186  24.558  1.00  0.00              
ATOM     92  CA  GLN    92       8.180  50.472  21.099  1.00  0.00              
ATOM     93  CA  GLU    93      11.523  51.153  19.468  1.00  0.00              
ATOM     94  CA  GLU    94      13.145  48.228  21.173  1.00  0.00              
ATOM     95  CA  VAL    95      10.259  45.930  20.103  1.00  0.00              
ATOM     96  CA  GLU    96      10.605  46.832  16.488  1.00  0.00              
ATOM     97  CA  THR    97      14.331  46.127  16.788  1.00  0.00              
ATOM     98  CA  LEU    98      13.535  42.779  18.423  1.00  0.00              
ATOM     99  CA  ALA    99      11.029  41.567  15.893  1.00  0.00              
ATOM    100  CA  ARG   100      13.507  42.388  13.152  1.00  0.00              
ATOM    101  CA  PRO   101      16.613  40.733  14.542  1.00  0.00              
ATOM    102  CA  CYS   102      14.704  37.556  15.288  1.00  0.00              
ATOM    103  CA  LEU   103      13.194  37.399  11.832  1.00  0.00              
ATOM    104  CA  ASN   104      16.683  37.838  10.319  1.00  0.00              
ATOM    105  CA  MET   105      17.964  34.968  12.504  1.00  0.00              
ATOM    106  CA  LEU   106      15.023  32.761  11.461  1.00  0.00              
ATOM    107  CA  ASN   107      15.802  33.573   7.792  1.00  0.00              
ATOM    108  CA  ARG   108      19.305  32.344   8.334  1.00  0.00              
ATOM    109  CA  LEU   109      18.230  29.075   9.987  1.00  0.00              
ATOM    110  CA  THR   110      15.740  28.109   7.216  1.00  0.00              
ATOM    111  CA  TYR   111      17.830  29.105   4.218  1.00  0.00              
ATOM    112  CA  GLU   112      18.238  27.185   0.909  1.00  0.00              
ATOM    113  CA  VAL   113      17.904  29.418  -2.079  1.00  0.00              
ATOM    114  CA  THR   114      20.261  27.987  -4.635  1.00  0.00              
ATOM    115  CA  GLU   115      19.958  30.863  -7.173  1.00  0.00              
ATOM    116  CA  ILE   116      17.013  32.928  -6.017  1.00  0.00              
ATOM    117  CA  ALA   117      15.343  35.832  -7.875  1.00  0.00              
ATOM    118  CA  LEU   118      12.483  37.512  -6.030  1.00  0.00              
ATOM    119  CA  ASP   119       9.313  37.990  -8.125  1.00  0.00              
ATOM    120  CA  LEU   120       6.965  40.421  -6.500  1.00  0.00              
ATOM    121  CA  PRO   121       7.337  43.763  -8.313  1.00  0.00              
ATOM    122  CA  GLY   122      10.614  42.868  -9.894  1.00  0.00              
ATOM    123  CA  ILE   123      12.955  42.909  -6.951  1.00  0.00              
ATOM    124  CA  ASN   124      15.600  40.122  -6.874  1.00  0.00              
ATOM    125  CA  LEU   125      17.046  38.845  -3.845  1.00  0.00              
ATOM    126  CA  GLU   126      15.981  35.368  -1.744  1.00  0.00              
ATOM    127  CA  PHE   127      17.588  34.529   2.051  1.00  0.00              
TER                                                                             
END
