
PFRMAT TS
TARGET T0335
AUTHOR SAM_T06_server
REMARK   6 
REMARK   6 T0335 model 5 Mon Jun 19 11:50:16 2006
METHOD The SAM-T06 server uses methods similar to SAM_T04 in CASP6 and
METHOD the SAM-T02 method in CASP5.
METHOD 
METHOD We start with a fully automated method:
METHOD    
METHOD     Use the SAM-T2K and SAM-T04 methods for finding homologs of the
METHOD       target and aligning them.
METHOD 
METHOD     Make local structure predictions using neural nets and the
METHOD       multiple alignments.  Different neural nets are used for the
METHOD       SAM-T2K alignments and the SAM-T04 alignments.
METHOD       We currently use 8 local-structure alphabets: 
METHOD 	DSSP
METHOD 	STRIDE
METHOD 	STR2	an extended version of DSSP that splits the beta strands
METHOD 		into multiple classes (parallel/antiparallel/mixed,
METHOD 					edge/center)
METHOD 	ALPHA	an discretization of the alpha torsion angle:
METHOD 		CA(i-i), CA(i), CA(i+1), CA(i+2)
METHOD 	BYS	a discretization of Ramachandran plots, due to Bystroff
METHOD 	CB_burial_14_7	a 7-state discretization of the number of C_beta
METHOD 		atoms in a 14 Angstrom radius sphere around the C_beta.
METHOD 	near-backbone-11 an 11-state discretization of the number of
METHOD 	      residues (represented by near-backbone points) in a 
METHOD 	      9.65 Angstrom radius sphere around the sidechain proxy
METHOD 	      spot for the residue.
METHOD 	DSSP_EHL2	CASP's collapse of the DSSP alphabet
METHOD 			DSSP_EHL2 is not predicted directly by a
METHOD 			neural net, but is computed as a weighted
METHOD 			average of the other backbone alphabet predictions. 
METHOD     
METHOD     We make 2-track HMMs with each alphabet (1.0 amino acid + 0.3 local structure)
METHOD       and use them to score a template library of 6400 (t04) or 9900 (t2k) templates
METHOD       We also used a single-track HMM to score not just the template
METHOD       library, but a non-redundant copy of the entire PDB.
METHOD 
METHOD     We also made a few 3-track HMMs (AA, str2, CB_burial_14_7 and 
METHOD       AA, str2, near-backbone-11) for finding and aligning more remote
METHOD       homologs.
METHOD     
METHOD     One-track HMMs built from the template library multiple alignments
METHOD        were used to score the target sequence (for early targets, only
METHOD        t2k template library was searched this way).
METHOD 
METHOD     All the logs of e-values were combined in a weighted average (with
METHOD        rather arbitrary weights, since we did not have time to
METHOD        optimize them), and the best templates ranked.  Ranking was
METHOD        separate for predictions from the t2k and t04 multiple alignments.
METHOD     
METHOD     Alignments of the target to the top templates were made using
METHOD       several different alignment methods (mainly using the SAM hmmscore
METHOD       program, but a few alignments were made with Bob Edgar's MUSCLE
METHOD       profile-profile aligner).
METHOD 
METHOD     Generate fragments (short 9-residue alignments for each position)
METHOD       using SAM's "fragfinder" program and the 3-track HMM.
METHOD 
METHOD     Then the "undertaker" program (named because it optimizes burial)
METHOD       is used to try to combine the alignments and the fragments into
METHOD       a consistent 3D model.  No single alignment or parent template
METHOD       was used, though in many cases one had much more influence than
METHOD       the others.  The alignment scores were not passed to undertaker,
METHOD       but were used only to pick the set of alignments and fragments
METHOD       that undertaker would see.  Helix and strand constraints
METHOD       generated from the secondary-structure predictions are passed to
METHOD       undertaker to use in the cost function.
METHOD 
METHOD     One important change in this server over previous methods is that
METHOD     sheet constraints are extracted from the top few alignments and
METHOD     passed to undertaker. 
METHOD -------------
MODEL  5
PARENT N/A
ATOM      2  N   VAL    21      10.785   7.998  13.620  1.00  0.00
ATOM      3  CA  VAL    21       9.343   8.175  13.743  1.00  0.00
ATOM      4  CB  VAL    21       8.985   9.088  14.931  1.00  0.00
ATOM      5  CG1 VAL    21       9.486   8.487  16.235  1.00  0.00
ATOM      6  CG2 VAL    21       9.622  10.458  14.759  1.00  0.00
ATOM      7  O   VAL    21       9.495   9.533  11.767  1.00  0.00
ATOM      8  C   VAL    21       8.789   8.808  12.468  1.00  0.00
ATOM      9  N   ILE    22       7.532   8.517  12.154  1.00  0.00
ATOM     10  CA  ILE    22       6.899   9.139  11.002  1.00  0.00
ATOM     11  CB  ILE    22       5.657   8.351  10.547  1.00  0.00
ATOM     12  CG1 ILE    22       6.051   6.940  10.107  1.00  0.00
ATOM     13  CG2 ILE    22       4.982   9.050   9.377  1.00  0.00
ATOM     14  CD1 ILE    22       4.873   6.024   9.865  1.00  0.00
ATOM     15  O   ILE    22       5.793  10.625  12.522  1.00  0.00
ATOM     16  C   ILE    22       6.544  10.522  11.554  1.00  0.00
ATOM     17  N   THR    23       7.098  11.599  10.965  1.00  0.00
ATOM     18  CA  THR    23       6.816  12.960  11.438  1.00  0.00
ATOM     19  CB  THR    23       7.364  14.021  10.465  1.00  0.00
ATOM     20  CG2 THR    23       7.105  15.420  11.002  1.00  0.00
ATOM     21  OG1 THR    23       8.777  13.840  10.304  1.00  0.00
ATOM     22  O   THR    23       4.531  12.888  10.714  1.00  0.00
ATOM     23  C   THR    23       5.322  13.236  11.589  1.00  0.00
ATOM     24  N   GLU    24       4.923  13.859  12.709  1.00  0.00
ATOM     25  CA  GLU    24       3.526  14.199  13.002  1.00  0.00
ATOM     26  CB  GLU    24       3.448  15.168  14.184  1.00  0.00
ATOM     27  CG  GLU    24       2.030  15.554  14.575  1.00  0.00
ATOM     28  CD  GLU    24       1.989  16.481  15.774  1.00  0.00
ATOM     29  OE1 GLU    24       3.068  16.793  16.321  1.00  0.00
ATOM     30  OE2 GLU    24       0.878  16.895  16.167  1.00  0.00
ATOM     31  O   GLU    24       1.699  14.487  11.469  1.00  0.00
ATOM     32  C   GLU    24       2.816  14.865  11.827  1.00  0.00
ATOM     33  N   GLU    25       3.474  15.846  11.219  1.00  0.00
ATOM     34  CA  GLU    25       2.895  16.576  10.094  1.00  0.00
ATOM     35  CB  GLU    25       3.809  17.730   9.679  1.00  0.00
ATOM     36  CG  GLU    25       3.901  18.850  10.703  1.00  0.00
ATOM     37  CD  GLU    25       4.897  19.922  10.306  1.00  0.00
ATOM     38  OE1 GLU    25       5.532  19.778   9.243  1.00  0.00
ATOM     39  OE2 GLU    25       5.039  20.907  11.061  1.00  0.00
ATOM     40  O   GLU    25       1.972  16.154   7.930  1.00  0.00
ATOM     41  C   GLU    25       2.672  15.726   8.841  1.00  0.00
ATOM     42  N   GLU    26       3.257  14.532   8.791  1.00  0.00
ATOM     43  CA  GLU    26       3.138  13.667   7.613  1.00  0.00
ATOM     44  CB  GLU    26       4.478  13.000   7.299  1.00  0.00
ATOM     45  CG  GLU    26       5.586  13.976   6.934  1.00  0.00
ATOM     46  CD  GLU    26       6.909  13.283   6.672  1.00  0.00
ATOM     47  OE1 GLU    26       6.964  12.043   6.798  1.00  0.00
ATOM     48  OE2 GLU    26       7.890  13.982   6.341  1.00  0.00
ATOM     49  O   GLU    26       1.667  11.973   6.754  1.00  0.00
ATOM     50  C   GLU    26       2.123  12.537   7.752  1.00  0.00
ATOM     51  N   LYS    27       1.780  12.210   8.992  1.00  0.00
ATOM     52  CA  LYS    27       0.890  11.098   9.271  1.00  0.00
ATOM     53  CB  LYS    27       0.484  11.095  10.747  1.00  0.00
ATOM     54  CG  LYS    27      -0.427   9.942  11.138  1.00  0.00
ATOM     55  CD  LYS    27      -0.729   9.958  12.626  1.00  0.00
ATOM     56  CE  LYS    27      -1.665   8.823  13.013  1.00  0.00
ATOM     57  NZ  LYS    27      -1.965   8.822  14.471  1.00  0.00
ATOM     58  O   LYS    27      -0.785   9.954   8.034  1.00  0.00
ATOM     59  C   LYS    27      -0.426  11.027   8.521  1.00  0.00
ATOM     60  N   ALA    28      -1.141  12.142   8.405  1.00  0.00
ATOM     61  CA  ALA    28      -2.418  12.119   7.690  1.00  0.00
ATOM     62  CB  ALA    28      -3.087  13.483   7.755  1.00  0.00
ATOM     63  O   ALA    28      -2.927  10.916   5.676  1.00  0.00
ATOM     64  C   ALA    28      -2.207  11.758   6.225  1.00  0.00
ATOM     65  N   GLU    29      -1.218  12.385   5.594  1.00  0.00
ATOM     66  CA  GLU    29      -0.930  12.093   4.195  1.00  0.00
ATOM     67  CB  GLU    29       0.165  13.024   3.670  1.00  0.00
ATOM     68  CG  GLU    29      -0.278  14.468   3.499  1.00  0.00
ATOM     69  CD  GLU    29       0.861  15.383   3.095  1.00  0.00
ATOM     70  OE1 GLU    29       2.011  14.902   3.020  1.00  0.00
ATOM     71  OE2 GLU    29       0.604  16.581   2.853  1.00  0.00
ATOM     72  O   GLU    29      -0.828   9.964   3.074  1.00  0.00
ATOM     73  C   GLU    29      -0.449  10.644   4.028  1.00  0.00
ATOM     74  N   GLN    30       0.379  10.172   4.951  1.00  0.00
ATOM     75  CA  GLN    30       0.887   8.804   4.859  1.00  0.00
ATOM     76  CB  GLN    30       1.881   8.524   5.987  1.00  0.00
ATOM     77  CG  GLN    30       2.548   7.160   5.902  1.00  0.00
ATOM     78  CD  GLN    30       3.407   7.008   4.663  1.00  0.00
ATOM     79  OE1 GLN    30       4.189   7.897   4.325  1.00  0.00
ATOM     80  NE2 GLN    30       3.264   5.877   3.982  1.00  0.00
ATOM     81  O   GLN    30      -0.321   6.812   4.242  1.00  0.00
ATOM     82  C   GLN    30      -0.271   7.811   4.966  1.00  0.00
ATOM     83  N   GLN    31      -1.207   8.089   5.868  1.00  0.00
ATOM     84  CA  GLN    31      -2.354   7.214   6.040  1.00  0.00
ATOM     85  CB  GLN    31      -3.225   7.696   7.203  1.00  0.00
ATOM     86  CG  GLN    31      -2.594   7.501   8.573  1.00  0.00
ATOM     87  CD  GLN    31      -3.433   8.091   9.689  1.00  0.00
ATOM     88  OE1 GLN    31      -4.452   8.733   9.439  1.00  0.00
ATOM     89  NE2 GLN    31      -3.003   7.875  10.928  1.00  0.00
ATOM     90  O   GLN    31      -3.757   6.151   4.400  1.00  0.00
ATOM     91  C   GLN    31      -3.213   7.193   4.772  1.00  0.00
ATOM     92  N   LYS    32      -3.330   8.339   4.106  1.00  0.00
ATOM     93  CA  LYS    32      -4.107   8.422   2.872  1.00  0.00
ATOM     94  CB  LYS    32      -4.125   9.859   2.347  1.00  0.00
ATOM     95  CG  LYS    32      -4.948  10.046   1.082  1.00  0.00
ATOM     96  CD  LYS    32      -4.982  11.505   0.657  1.00  0.00
ATOM     97  CE  LYS    32      -5.763  11.686  -0.635  1.00  0.00
ATOM     98  NZ  LYS    32      -5.785  13.108  -1.077  1.00  0.00
ATOM     99  O   LYS    32      -4.177   6.762   1.142  1.00  0.00
ATOM    100  C   LYS    32      -3.481   7.515   1.812  1.00  0.00
ATOM    101  N   LEU    33      -2.164   7.598   1.659  1.00  0.00
ATOM    102  CA  LEU    33      -1.461   6.761   0.694  1.00  0.00
ATOM    103  CB  LEU    33       0.030   7.107   0.670  1.00  0.00
ATOM    104  CG  LEU    33       0.399   8.471   0.081  1.00  0.00
ATOM    105  CD1 LEU    33       1.878   8.760   0.284  1.00  0.00
ATOM    106  CD2 LEU    33       0.106   8.509  -1.411  1.00  0.00
ATOM    107  O   LEU    33      -1.724   4.444   0.164  1.00  0.00
ATOM    108  C   LEU    33      -1.601   5.283   1.049  1.00  0.00
ATOM    109  N   ARG    34      -1.582   4.970   2.341  1.00  0.00
ATOM    110  CA  ARG    34      -1.711   3.584   2.775  1.00  0.00
ATOM    111  CB  ARG    34      -1.595   3.486   4.297  1.00  0.00
ATOM    112  CG  ARG    34      -0.196   3.749   4.831  1.00  0.00
ATOM    113  CD  ARG    34      -0.163   3.681   6.349  1.00  0.00
ATOM    114  NE  ARG    34       1.164   3.980   6.882  1.00  0.00
ATOM    115  CZ  ARG    34       1.453   4.044   8.177  1.00  0.00
ATOM    116  NH1 ARG    34       2.688   4.321   8.569  1.00  0.00
ATOM    117  NH2 ARG    34       0.504   3.828   9.079  1.00  0.00
ATOM    118  O   ARG    34      -3.153   1.936   1.796  1.00  0.00
ATOM    119  C   ARG    34      -3.065   3.030   2.351  1.00  0.00
ATOM    120  N   GLN    35      -4.118   3.795   2.612  1.00  0.00
ATOM    121  CA  GLN    35      -5.460   3.372   2.246  1.00  0.00
ATOM    122  CB  GLN    35      -6.483   4.444   2.625  1.00  0.00
ATOM    123  CG  GLN    35      -6.704   4.588   4.122  1.00  0.00
ATOM    124  CD  GLN    35      -7.620   5.746   4.467  1.00  0.00
ATOM    125  OE1 GLN    35      -8.037   6.502   3.592  1.00  0.00
ATOM    126  NE2 GLN    35      -7.937   5.887   5.750  1.00  0.00
ATOM    127  O   GLN    35      -6.057   2.094   0.320  1.00  0.00
ATOM    128  C   GLN    35      -5.554   3.129   0.743  1.00  0.00
ATOM    129  N   GLU    36      -5.057   4.070  -0.057  1.00  0.00
ATOM    130  CA  GLU    36      -5.087   3.928  -1.512  1.00  0.00
ATOM    131  CB  GLU    36      -4.459   5.151  -2.182  1.00  0.00
ATOM    132  CG  GLU    36      -5.296   6.415  -2.078  1.00  0.00
ATOM    133  CD  GLU    36      -4.602   7.625  -2.670  1.00  0.00
ATOM    134  OE1 GLU    36      -3.437   7.490  -3.099  1.00  0.00
ATOM    135  OE2 GLU    36      -5.221   8.709  -2.704  1.00  0.00
ATOM    136  O   GLU    36      -4.679   2.046  -2.940  1.00  0.00
ATOM    137  C   GLU    36      -4.315   2.691  -1.959  1.00  0.00
ATOM    138  N   TYR    37      -3.242   2.369  -1.242  1.00  0.00
ATOM    139  CA  TYR    37      -2.433   1.206  -1.577  1.00  0.00
ATOM    140  CB  TYR    37      -1.150   1.189  -0.744  1.00  0.00
ATOM    141  CG  TYR    37      -0.261  -0.004  -1.013  1.00  0.00
ATOM    142  CD1 TYR    37       0.553  -0.045  -2.138  1.00  0.00
ATOM    143  CD2 TYR    37      -0.238  -1.085  -0.141  1.00  0.00
ATOM    144  CE1 TYR    37       1.368  -1.131  -2.393  1.00  0.00
ATOM    145  CE2 TYR    37       0.572  -2.180  -0.380  1.00  0.00
ATOM    146  CZ  TYR    37       1.378  -2.194  -1.517  1.00  0.00
ATOM    147  OH  TYR    37       2.190  -3.277  -1.768  1.00  0.00
ATOM    148  O   TYR    37      -3.238  -0.988  -2.104  1.00  0.00
ATOM    149  C   TYR    37      -3.222  -0.063  -1.292  1.00  0.00
ATOM    150  N   LEU    38      -3.872  -0.100  -0.133  1.00  0.00
ATOM    151  CA  LEU    38      -4.682  -1.247   0.250  1.00  0.00
ATOM    152  CB  LEU    38      -5.310  -1.024   1.628  1.00  0.00
ATOM    153  CG  LEU    38      -4.353  -1.048   2.821  1.00  0.00
ATOM    154  CD1 LEU    38      -5.071  -0.625   4.093  1.00  0.00
ATOM    155  CD2 LEU    38      -3.792  -2.446   3.033  1.00  0.00
ATOM    156  O   LEU    38      -6.023  -2.580  -1.212  1.00  0.00
ATOM    157  C   LEU    38      -5.799  -1.465  -0.762  1.00  0.00
ATOM    158  N   LYS    39      -6.491  -0.390  -1.127  1.00  0.00
ATOM    159  CA  LYS    39      -7.587  -0.482  -2.079  1.00  0.00
ATOM    160  CB  LYS    39      -8.263   0.879  -2.251  1.00  0.00
ATOM    161  CG  LYS    39      -9.061   1.333  -1.039  1.00  0.00
ATOM    162  CD  LYS    39      -9.707   2.688  -1.280  1.00  0.00
ATOM    163  CE  LYS    39     -10.484   3.153  -0.059  1.00  0.00
ATOM    164  NZ  LYS    39     -11.094   4.495  -0.269  1.00  0.00
ATOM    165  O   LYS    39      -7.813  -1.740  -4.102  1.00  0.00
ATOM    166  C   LYS    39      -7.133  -0.938  -3.459  1.00  0.00
ATOM    167  N   GLY    40      -5.993  -0.428  -3.918  1.00  0.00
ATOM    168  CA  GLY    40      -5.473  -0.796  -5.235  1.00  0.00
ATOM    169  O   GLY    40      -5.389  -2.910  -6.368  1.00  0.00
ATOM    170  C   GLY    40      -5.172  -2.290  -5.326  1.00  0.00
ATOM    171  N   PHE    41      -4.669  -2.864  -4.237  1.00  0.00
ATOM    172  CA  PHE    41      -4.339  -4.281  -4.212  1.00  0.00
ATOM    173  CB  PHE    41      -3.465  -4.606  -2.998  1.00  0.00
ATOM    174  CG  PHE    41      -2.094  -3.994  -3.058  1.00  0.00
ATOM    175  CD1 PHE    41      -1.595  -3.494  -4.247  1.00  0.00
ATOM    176  CD2 PHE    41      -1.304  -3.922  -1.924  1.00  0.00
ATOM    177  CE1 PHE    41      -0.334  -2.931  -4.301  1.00  0.00
ATOM    178  CE2 PHE    41      -0.044  -3.359  -1.978  1.00  0.00
ATOM    179  CZ  PHE    41       0.444  -2.866  -3.160  1.00  0.00
ATOM    180  O   PHE    41      -5.708  -6.136  -4.858  1.00  0.00
ATOM    181  C   PHE    41      -5.589  -5.148  -4.132  1.00  0.00
ATOM    182  N   ARG    42      -6.519  -4.777  -3.257  1.00  0.00
ATOM    183  CA  ARG    42      -7.748  -5.542  -3.092  1.00  0.00
ATOM    184  CB  ARG    42      -8.662  -4.873  -2.065  1.00  0.00
ATOM    185  CG  ARG    42      -8.122  -4.899  -0.644  1.00  0.00
ATOM    186  CD  ARG    42      -9.066  -4.196   0.319  1.00  0.00
ATOM    187  NE  ARG    42      -8.548  -4.188   1.685  1.00  0.00
ATOM    188  CZ  ARG    42      -9.146  -3.584   2.707  1.00  0.00
ATOM    189  NH1 ARG    42      -8.602  -3.630   3.915  1.00  0.00
ATOM    190  NH2 ARG    42     -10.287  -2.935   2.518  1.00  0.00
ATOM    191  O   ARG    42      -9.039  -6.725  -4.732  1.00  0.00
ATOM    192  C   ARG    42      -8.525  -5.656  -4.399  1.00  0.00
ATOM    193  N   SER    43      -9.981 -10.910  -7.065  1.00  0.00
ATOM    194  CA  SER    43     -11.381 -11.274  -6.893  1.00  0.00
ATOM    195  CB  SER    43     -11.819 -12.253  -7.982  1.00  0.00
ATOM    196  OG  SER    43     -11.795 -11.640  -9.260  1.00  0.00
ATOM    197  O   SER    43     -12.652 -11.669  -4.902  1.00  0.00
ATOM    198  C   SER    43     -11.639 -11.937  -5.548  1.00  0.00
ATOM    199  N   SER    44     -10.716 -12.795  -5.126  1.00  0.00
ATOM    200  CA  SER    44     -10.858 -13.458  -3.843  1.00  0.00
ATOM    201  CB  SER    44      -9.666 -14.382  -3.584  1.00  0.00
ATOM    202  OG  SER    44      -9.650 -15.464  -4.499  1.00  0.00
ATOM    203  O   SER    44     -11.801 -12.546  -1.840  1.00  0.00
ATOM    204  C   SER    44     -10.928 -12.454  -2.704  1.00  0.00
ATOM    205  N   MET    45     -10.013 -11.491  -2.696  1.00  0.00
ATOM    206  CA  MET    45     -10.003 -10.479  -1.650  1.00  0.00
ATOM    207  CB  MET    45      -8.733  -9.629  -1.737  1.00  0.00
ATOM    208  CG  MET    45      -7.457 -10.387  -1.404  1.00  0.00
ATOM    209  SD  MET    45      -7.442 -11.014   0.286  1.00  0.00
ATOM    210  CE  MET    45      -7.983 -12.701   0.026  1.00  0.00
ATOM    211  O   MET    45     -11.727  -9.089  -0.753  1.00  0.00
ATOM    212  C   MET    45     -11.198  -9.545  -1.767  1.00  0.00
ATOM    213  N   LYS    46     -11.617  -9.252  -2.995  1.00  0.00
ATOM    214  CA  LYS    46     -12.778  -8.393  -3.196  1.00  0.00
ATOM    215  CB  LYS    46     -12.988  -8.115  -4.685  1.00  0.00
ATOM    216  CG  LYS    46     -11.933  -7.213  -5.303  1.00  0.00
ATOM    217  CD  LYS    46     -12.199  -6.986  -6.782  1.00  0.00
ATOM    218  CE  LYS    46     -11.141  -6.085  -7.402  1.00  0.00
ATOM    219  NZ  LYS    46     -11.373  -5.878  -8.858  1.00  0.00
ATOM    220  O   LYS    46     -14.948  -8.402  -2.190  1.00  0.00
ATOM    221  C   LYS    46     -14.028  -9.074  -2.640  1.00  0.00
ATOM    222  N   ASN    47     -14.065 -10.403  -2.683  1.00  0.00
ATOM    223  CA  ASN    47     -15.212 -11.139  -2.150  1.00  0.00
ATOM    224  CB  ASN    47     -15.137 -12.613  -2.555  1.00  0.00
ATOM    225  CG  ASN    47     -15.445 -12.830  -4.023  1.00  0.00
ATOM    226  ND2 ASN    47     -14.998 -13.961  -4.559  1.00  0.00
ATOM    227  OD1 ASN    47     -16.075 -11.991  -4.666  1.00  0.00
ATOM    228  O   ASN    47     -16.265 -10.839  -0.016  1.00  0.00
ATOM    229  C   ASN    47     -15.218 -11.046  -0.626  1.00  0.00
ATOM    230  N   THR    48     -14.044 -11.202  -0.020  1.00  0.00
ATOM    231  CA  THR    48     -13.912 -11.123   1.432  1.00  0.00
ATOM    232  CB  THR    48     -12.491 -11.502   1.890  1.00  0.00
ATOM    233  CG2 THR    48     -12.367 -11.370   3.400  1.00  0.00
ATOM    234  OG1 THR    48     -12.212 -12.858   1.520  1.00  0.00
ATOM    235  O   THR    48     -14.988  -9.507   2.841  1.00  0.00
ATOM    236  C   THR    48     -14.200  -9.708   1.919  1.00  0.00
ATOM    237  N   LEU    49     -13.554  -8.726   1.301  1.00  0.00
ATOM    238  CA  LEU    49     -13.750  -7.336   1.683  1.00  0.00
ATOM    239  CB  LEU    49     -12.982  -6.407   0.739  1.00  0.00
ATOM    240  CG  LEU    49     -13.004  -4.918   1.087  1.00  0.00
ATOM    241  CD1 LEU    49     -12.387  -4.677   2.457  1.00  0.00
ATOM    242  CD2 LEU    49     -12.216  -4.114   0.064  1.00  0.00
ATOM    243  O   LEU    49     -15.707  -6.145   2.392  1.00  0.00
ATOM    244  C   LEU    49     -15.228  -6.977   1.621  1.00  0.00
ATOM    245  N   LYS    50     -15.946  -7.609   0.696  1.00  0.00
ATOM    246  CA  LYS    50     -17.372  -7.358   0.527  1.00  0.00
ATOM    247  CB  LYS    50     -17.787  -7.589  -0.927  1.00  0.00
ATOM    248  CG  LYS    50     -17.182  -6.599  -1.909  1.00  0.00
ATOM    249  CD  LYS    50     -17.685  -6.846  -3.322  1.00  0.00
ATOM    250  CE  LYS    50     -17.079  -5.857  -4.305  1.00  0.00
ATOM    251  NZ  LYS    50     -17.459  -6.168  -5.711  1.00  0.00
ATOM    252  O   LYS    50     -19.178  -7.829   2.042  1.00  0.00
ATOM    253  C   LYS    50     -18.225  -8.282   1.409  1.00  0.00
ATOM    254  N   SER    51     -17.883  -9.570   1.452  1.00  0.00
ATOM    255  CA  SER    51     -18.622 -10.530   2.273  1.00  0.00
ATOM    256  CB  SER    51     -18.048 -11.938   2.098  1.00  0.00
ATOM    257  OG  SER    51     -16.727 -12.016   2.603  1.00  0.00
ATOM    258  O   SER    51     -19.412 -10.507   4.539  1.00  0.00
ATOM    259  C   SER    51     -18.535 -10.158   3.749  1.00  0.00
ATOM    260  N   GLY    59     -17.468  -9.456   4.110  1.00  0.00
ATOM    261  CA  GLY    59     -17.276  -9.048   5.490  1.00  0.00
ATOM    262  O   GLY    59     -15.476  -9.131   7.064  1.00  0.00
ATOM    263  C   GLY    59     -16.038  -9.671   6.109  1.00  0.00
ATOM    264  N   ASN    60     -15.612 -10.808   5.560  1.00  0.00
ATOM    265  CA  ASN    60     -14.437 -11.518   6.054  1.00  0.00
ATOM    266  CB  ASN    60     -14.029 -12.623   5.078  1.00  0.00
ATOM    267  CG  ASN    60     -14.991 -13.796   5.090  1.00  0.00
ATOM    268  ND2 ASN    60     -14.953 -14.602   4.035  1.00  0.00
ATOM    269  OD1 ASN    60     -15.758 -13.972   6.037  1.00  0.00
ATOM    270  O   ASN    60     -13.199  -9.472   5.743  1.00  0.00
ATOM    271  C   ASN    60     -13.226 -10.604   6.234  1.00  0.00
ATOM    272  N   ASP    61     -12.224 -11.113   6.940  1.00  0.00
ATOM    273  CA  ASP    61     -11.002 -10.367   7.208  1.00  0.00
ATOM    274  CB  ASP    61     -10.416 -10.768   8.563  1.00  0.00
ATOM    275  CG  ASP    61     -11.252 -10.279   9.729  1.00  0.00
ATOM    276  OD1 ASP    61     -12.119  -9.406   9.512  1.00  0.00
ATOM    277  OD2 ASP    61     -11.043 -10.770  10.857  1.00  0.00
ATOM    278  O   ASP    61      -9.778 -11.737   5.646  1.00  0.00
ATOM    279  C   ASP    61      -9.932 -10.618   6.147  1.00  0.00
ATOM    280  N   VAL    62      -9.194  -9.565   5.815  1.00  0.00
ATOM    281  CA  VAL    62      -8.114  -9.651   4.839  1.00  0.00
ATOM    282  CB  VAL    62      -8.062  -8.399   3.943  1.00  0.00
ATOM    283  CG1 VAL    62      -6.909  -8.497   2.957  1.00  0.00
ATOM    284  CG2 VAL    62      -9.356  -8.253   3.158  1.00  0.00
ATOM    285  O   VAL    62      -6.402  -8.827   6.301  1.00  0.00
ATOM    286  C   VAL    62      -6.813  -9.775   5.634  1.00  0.00
ATOM    287  N   THR    63      -6.177 -10.945   5.582  1.00  0.00
ATOM    288  CA  THR    63      -4.927 -11.148   6.315  1.00  0.00
ATOM    289  CB  THR    63      -4.600 -12.646   6.465  1.00  0.00
ATOM    290  CG2 THR    63      -5.737 -13.371   7.171  1.00  0.00
ATOM    291  OG1 THR    63      -4.411 -13.229   5.171  1.00  0.00
ATOM    292  O   THR    63      -3.836 -10.206   4.393  1.00  0.00
ATOM    293  C   THR    63      -3.759 -10.489   5.591  1.00  0.00
ATOM    294  N   PRO    64      -2.681 -10.238   6.327  1.00  0.00
ATOM    295  CA  PRO    64      -1.511  -9.618   5.736  1.00  0.00
ATOM    296  CB  PRO    64      -0.567  -9.406   6.921  1.00  0.00
ATOM    297  CG  PRO    64      -1.469  -9.304   8.105  1.00  0.00
ATOM    298  CD  PRO    64      -2.593 -10.271   7.857  1.00  0.00
ATOM    299  O   PRO    64      -0.368 -10.041   3.681  1.00  0.00
ATOM    300  C   PRO    64      -0.890 -10.518   4.687  1.00  0.00
ATOM    301  N   GLU    65      -0.950 -11.827   4.916  1.00  0.00
ATOM    302  CA  GLU    65      -0.386 -12.784   3.972  1.00  0.00
ATOM    303  CB  GLU    65      -0.409 -14.196   4.563  1.00  0.00
ATOM    304  CG  GLU    65       0.569 -14.404   5.708  1.00  0.00
ATOM    305  CD  GLU    65       0.453 -15.784   6.327  1.00  0.00
ATOM    306  OE1 GLU    65      -0.431 -16.554   5.901  1.00  0.00
ATOM    307  OE2 GLU    65       1.251 -16.094   7.238  1.00  0.00
ATOM    308  O   GLU    65      -0.665 -12.955   1.599  1.00  0.00
ATOM    309  C   GLU    65      -1.202 -12.773   2.693  1.00  0.00
ATOM    310  N   LYS    66      -2.504 -12.558   2.841  1.00  0.00
ATOM    311  CA  LYS    66      -3.410 -12.517   1.701  1.00  0.00
ATOM    312  CB  LYS    66      -4.861 -12.417   2.173  1.00  0.00
ATOM    313  CG  LYS    66      -5.388 -13.681   2.832  1.00  0.00
ATOM    314  CD  LYS    66      -6.834 -13.514   3.270  1.00  0.00
ATOM    315  CE  LYS    66      -7.351 -14.766   3.961  1.00  0.00
ATOM    316  NZ  LYS    66      -8.759 -14.607   4.417  1.00  0.00
ATOM    317  O   LYS    66      -3.075 -11.396  -0.395  1.00  0.00
ATOM    318  C   LYS    66      -3.090 -11.304   0.830  1.00  0.00
ATOM    319  N   LEU    67      -2.834 -10.167   1.471  1.00  0.00
ATOM    320  CA  LEU    67      -2.499  -8.945   0.749  1.00  0.00
ATOM    321  CB  LEU    67      -2.395  -7.763   1.717  1.00  0.00
ATOM    322  CG  LEU    67      -3.703  -7.295   2.358  1.00  0.00
ATOM    323  CD1 LEU    67      -3.433  -6.244   3.423  1.00  0.00
ATOM    324  CD2 LEU    67      -4.628  -6.689   1.314  1.00  0.00
ATOM    325  O   LEU    67      -1.032  -8.677  -1.122  1.00  0.00
ATOM    326  C   LEU    67      -1.164  -9.091   0.027  1.00  0.00
ATOM    327  N   LYS    68      -0.176  -9.682   0.698  1.00  0.00
ATOM    328  CA  LYS    68       1.141  -9.883   0.087  1.00  0.00
ATOM    329  CB  LYS    68       2.074 -10.613   1.056  1.00  0.00
ATOM    330  CG  LYS    68       3.480 -10.827   0.518  1.00  0.00
ATOM    331  CD  LYS    68       4.372 -11.493   1.555  1.00  0.00
ATOM    332  CE  LYS    68       5.764 -11.752   1.001  1.00  0.00
ATOM    333  NZ  LYS    68       6.640 -12.426   1.999  1.00  0.00
ATOM    334  O   LYS    68       1.556 -10.379  -2.225  1.00  0.00
ATOM    335  C   LYS    68       0.995 -10.717  -1.183  1.00  0.00
ATOM    336  N   ARG    69       0.245 -11.811  -1.090  1.00  0.00
ATOM    337  CA  ARG    69       0.028 -12.678  -2.244  1.00  0.00
ATOM    338  CB  ARG    69      -0.841 -13.877  -1.858  1.00  0.00
ATOM    339  CG  ARG    69      -0.145 -14.886  -0.958  1.00  0.00
ATOM    340  CD  ARG    69      -1.078 -16.022  -0.577  1.00  0.00
ATOM    341  NE  ARG    69      -0.439 -16.976   0.327  1.00  0.00
ATOM    342  CZ  ARG    69      -1.050 -18.030   0.855  1.00  0.00
ATOM    343  NH1 ARG    69      -0.390 -18.843   1.668  1.00  0.00
ATOM    344  NH2 ARG    69      -2.324 -18.269   0.570  1.00  0.00
ATOM    345  O   ARG    69      -0.277 -12.032  -4.531  1.00  0.00
ATOM    346  C   ARG    69      -0.673 -11.925  -3.372  1.00  0.00
ATOM    347  N   GLU    70      -1.713 -11.167  -3.033  1.00  0.00
ATOM    348  CA  GLU    70      -2.451 -10.395  -4.033  1.00  0.00
ATOM    349  CB  GLU    70      -3.608  -9.637  -3.378  1.00  0.00
ATOM    350  CG  GLU    70      -4.432  -8.805  -4.346  1.00  0.00
ATOM    351  CD  GLU    70      -5.205  -9.655  -5.333  1.00  0.00
ATOM    352  OE1 GLU    70      -5.282 -10.884  -5.127  1.00  0.00
ATOM    353  OE2 GLU    70      -5.734  -9.093  -6.315  1.00  0.00
ATOM    354  O   GLU    70      -1.514  -9.224  -5.923  1.00  0.00
ATOM    355  C   GLU    70      -1.513  -9.383  -4.701  1.00  0.00
ATOM    356  N   GLN    71      -0.729  -8.689  -3.884  1.00  0.00
ATOM    357  CA  GLN    71       0.231  -7.700  -4.380  1.00  0.00
ATOM    358  CB  GLN    71       1.067  -7.140  -3.226  1.00  0.00
ATOM    359  CG  GLN    71       2.067  -6.075  -3.645  1.00  0.00
ATOM    360  CD  GLN    71       2.863  -5.531  -2.475  1.00  0.00
ATOM    361  OE1 GLN    71       2.732  -6.010  -1.348  1.00  0.00
ATOM    362  NE2 GLN    71       3.690  -4.527  -2.739  1.00  0.00
ATOM    363  O   GLN    71       1.322  -7.838  -6.532  1.00  0.00
ATOM    364  C   GLN    71       1.191  -8.326  -5.407  1.00  0.00
ATOM    365  N   ARG    72       1.845  -9.414  -5.004  1.00  0.00
ATOM    366  CA  ARG    72       2.791 -10.138  -5.853  1.00  0.00
ATOM    367  CB  ARG    72       3.267 -11.416  -5.158  1.00  0.00
ATOM    368  CG  ARG    72       4.335 -12.180  -5.923  1.00  0.00
ATOM    369  CD  ARG    72       4.666 -13.498  -5.243  1.00  0.00
ATOM    370  NE  ARG    72       3.540 -14.429  -5.275  1.00  0.00
ATOM    371  CZ  ARG    72       3.194 -15.146  -6.340  1.00  0.00
ATOM    372  NH1 ARG    72       2.154 -15.967  -6.277  1.00  0.00
ATOM    373  NH2 ARG    72       3.888 -15.039  -7.465  1.00  0.00
ATOM    374  O   ARG    72       2.692 -10.279  -8.258  1.00  0.00
ATOM    375  C   ARG    72       2.141 -10.532  -7.185  1.00  0.00
ATOM    376  N   ASN    73       0.960 -11.140  -7.109  1.00  0.00
ATOM    377  CA  ASN    73       0.227 -11.561  -8.303  1.00  0.00
ATOM    378  CB  ASN    73      -1.072 -12.269  -7.914  1.00  0.00
ATOM    379  CG  ASN    73      -1.745 -12.942  -9.093  1.00  0.00
ATOM    380  ND2 ASN    73      -3.054 -13.141  -8.992  1.00  0.00
ATOM    381  OD1 ASN    73      -1.095 -13.280 -10.082  1.00  0.00
ATOM    382  O   ASN    73      -0.047 -10.470 -10.402  1.00  0.00
ATOM    383  C   ASN    73      -0.135 -10.379  -9.185  1.00  0.00
TER
END



