####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 44 ( 344), selected 44 , name T0953s2TS041_3-D1 # Molecule2: number of CA atoms 44 ( 344), selected 44 , name T0953s2-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS041_3-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 17 - 35 4.66 19.75 LONGEST_CONTINUOUS_SEGMENT: 19 18 - 36 4.72 20.27 LCS_AVERAGE: 39.41 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 19 - 29 1.77 22.53 LONGEST_CONTINUOUS_SEGMENT: 11 20 - 30 1.86 22.52 LCS_AVERAGE: 18.75 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 20 - 29 0.60 23.00 LCS_AVERAGE: 13.12 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 44 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 2 A 2 3 3 17 3 3 4 4 4 4 6 7 8 11 12 13 16 16 19 20 20 21 22 22 LCS_GDT V 3 V 3 3 6 17 3 3 4 4 4 6 6 7 8 9 12 13 16 16 19 20 20 21 22 22 LCS_GDT Q 4 Q 4 5 6 17 3 4 5 5 5 7 8 9 10 13 13 13 16 16 19 20 21 21 22 23 LCS_GDT G 5 G 5 5 6 17 1 4 5 5 6 6 8 9 10 13 13 13 16 16 19 20 21 21 22 23 LCS_GDT P 6 P 6 5 6 17 3 4 5 5 6 6 8 9 10 13 13 13 16 16 19 20 21 21 22 23 LCS_GDT W 7 W 7 5 6 17 3 4 5 5 5 6 8 9 10 13 13 13 16 16 19 20 21 21 22 23 LCS_GDT V 8 V 8 5 6 17 3 4 5 6 6 7 8 9 10 13 13 13 16 16 19 20 21 21 22 23 LCS_GDT G 9 G 9 3 6 17 3 3 5 5 6 7 8 9 10 13 13 13 16 16 19 20 21 21 22 24 LCS_GDT S 10 S 10 4 6 17 3 4 5 6 6 7 8 9 11 13 13 15 17 18 19 21 22 22 24 24 LCS_GDT S 11 S 11 4 5 17 3 4 4 5 5 8 8 10 11 11 13 15 17 18 19 21 22 22 24 24 LCS_GDT Y 12 Y 12 4 5 17 3 4 4 5 5 8 8 10 10 11 13 15 17 18 19 21 22 22 24 24 LCS_GDT V 13 V 13 4 5 17 3 4 4 5 5 8 8 10 11 13 13 15 17 18 19 21 22 22 24 24 LCS_GDT A 14 A 14 4 5 17 3 4 5 6 6 8 8 10 11 13 13 15 17 18 19 21 22 22 24 24 LCS_GDT E 15 E 15 4 5 17 3 4 5 6 6 7 8 10 11 13 13 15 16 18 19 21 22 22 24 24 LCS_GDT T 16 T 16 4 6 17 3 4 5 6 6 7 8 10 11 13 13 15 17 18 19 21 22 22 24 24 LCS_GDT G 17 G 17 5 6 19 4 4 5 6 6 8 8 10 11 13 13 15 17 18 19 21 22 22 24 24 LCS_GDT Q 18 Q 18 5 6 19 4 4 5 5 5 8 8 10 13 13 15 17 17 18 19 21 22 22 24 24 LCS_GDT N 19 N 19 5 11 19 4 5 5 6 6 10 10 11 13 15 15 17 17 18 19 21 22 22 24 24 LCS_GDT W 20 W 20 10 11 19 7 10 10 10 10 10 11 11 12 15 15 17 17 18 19 21 22 22 24 24 LCS_GDT A 21 A 21 10 11 19 7 10 10 10 10 10 11 11 12 15 15 17 17 18 19 21 22 22 24 24 LCS_GDT S 22 S 22 10 11 19 7 10 10 10 10 10 11 11 12 15 15 17 17 18 19 21 22 22 24 24 LCS_GDT L 23 L 23 10 11 19 7 10 10 10 10 10 11 11 13 15 15 17 17 18 19 21 22 22 24 24 LCS_GDT A 24 A 24 10 11 19 7 10 10 10 10 10 11 11 13 15 15 17 17 18 19 21 22 22 24 24 LCS_GDT A 25 A 25 10 11 19 7 10 10 10 10 10 11 11 13 15 15 17 17 18 19 21 22 22 24 24 LCS_GDT N 26 N 26 10 11 19 7 10 10 10 10 10 11 11 13 15 15 17 17 18 19 21 22 22 24 24 LCS_GDT E 27 E 27 10 11 19 6 10 10 10 10 10 11 11 13 15 15 17 17 18 18 19 21 22 24 24 LCS_GDT L 28 L 28 10 11 19 6 10 10 10 10 10 11 11 13 15 15 17 17 18 18 19 21 22 23 24 LCS_GDT R 29 R 29 10 11 19 6 10 10 10 10 10 11 11 13 15 15 17 17 18 18 20 22 22 24 24 LCS_GDT V 30 V 30 4 11 19 3 5 5 6 7 8 11 11 13 15 15 17 17 18 18 21 22 22 24 24 LCS_GDT T 31 T 31 4 7 19 3 5 5 6 7 8 10 11 13 15 15 17 17 18 19 21 22 22 24 24 LCS_GDT E 32 E 32 4 7 19 3 5 5 6 7 8 10 11 13 15 15 17 17 18 19 21 22 22 24 24 LCS_GDT R 33 R 33 4 7 19 3 4 4 6 7 8 10 11 13 15 15 17 17 18 19 21 22 22 24 24 LCS_GDT P 34 P 34 4 7 19 3 4 4 6 7 8 9 11 13 14 15 17 17 18 18 19 21 22 24 24 LCS_GDT F 35 F 35 4 9 19 3 3 4 6 8 9 9 11 13 13 14 16 17 18 18 19 21 22 23 24 LCS_GDT W 36 W 36 6 10 19 3 5 7 8 9 10 10 11 11 12 12 13 15 15 17 19 19 20 21 22 LCS_GDT I 37 I 37 6 10 16 3 5 7 8 9 10 10 11 11 12 12 12 13 14 15 17 17 20 21 22 LCS_GDT S 38 S 38 6 10 14 3 5 7 8 9 10 10 11 11 12 12 12 13 14 15 17 17 20 21 22 LCS_GDT S 39 S 39 6 10 14 3 5 7 8 9 10 10 11 11 12 12 12 13 14 15 16 17 20 21 22 LCS_GDT F 40 F 40 6 10 14 3 5 6 8 9 10 10 11 11 12 12 12 13 14 14 14 14 15 16 18 LCS_GDT I 41 I 41 6 10 14 3 5 7 8 9 10 10 11 11 12 12 12 13 14 14 14 14 15 16 18 LCS_GDT G 42 G 42 5 10 14 3 5 7 8 9 10 10 11 11 12 12 12 13 14 14 14 14 14 14 15 LCS_GDT R 43 R 43 4 10 14 3 4 7 8 9 10 10 11 11 11 12 12 13 14 14 14 14 14 14 14 LCS_GDT S 44 S 44 4 10 14 3 3 6 8 9 10 10 11 11 11 12 12 13 14 14 14 14 14 14 14 LCS_GDT K 45 K 45 4 10 14 2 3 6 8 9 10 10 11 11 11 12 12 12 14 14 14 14 14 14 14 LCS_AVERAGE LCS_A: 23.76 ( 13.12 18.75 39.41 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 10 10 10 10 10 11 11 13 15 15 17 17 18 19 21 22 22 24 24 GDT PERCENT_AT 15.91 22.73 22.73 22.73 22.73 22.73 25.00 25.00 29.55 34.09 34.09 38.64 38.64 40.91 43.18 47.73 50.00 50.00 54.55 54.55 GDT RMS_LOCAL 0.31 0.60 0.60 0.60 0.60 0.60 1.86 1.77 3.17 3.47 3.47 3.92 3.92 4.17 5.20 5.68 5.97 5.97 6.55 6.55 GDT RMS_ALL_AT 22.95 23.00 23.00 23.00 23.00 23.00 22.52 22.53 21.08 19.96 19.96 19.92 19.92 20.11 17.73 17.35 17.11 17.11 16.97 17.51 # Checking swapping # possible swapping detected: E 27 E 27 # possible swapping detected: F 35 F 35 # possible swapping detected: F 40 F 40 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA A 2 A 2 33.508 0 0.121 0.127 34.751 0.000 0.000 - LGA V 3 V 3 31.128 0 0.639 0.513 32.817 0.000 0.000 30.493 LGA Q 4 Q 4 29.011 0 0.695 0.829 29.677 0.000 0.000 27.398 LGA G 5 G 5 27.581 0 0.366 0.366 31.231 0.000 0.000 - LGA P 6 P 6 29.334 0 0.047 0.413 29.420 0.000 0.000 28.390 LGA W 7 W 7 28.749 0 0.422 1.196 31.589 0.000 0.000 29.971 LGA V 8 V 8 26.734 0 0.633 0.721 28.645 0.000 0.000 26.373 LGA G 9 G 9 22.698 0 0.100 0.100 23.737 0.000 0.000 - LGA S 10 S 10 20.009 0 0.620 0.846 22.482 0.000 0.000 19.985 LGA S 11 S 11 22.931 0 0.043 0.688 24.470 0.000 0.000 24.470 LGA Y 12 Y 12 17.885 0 0.083 1.215 19.398 0.000 0.000 18.206 LGA V 13 V 13 13.397 0 0.591 0.919 17.041 0.000 0.000 11.650 LGA A 14 A 14 19.242 0 0.613 0.594 20.840 0.000 0.000 - LGA E 15 E 15 21.990 0 0.021 1.398 29.085 0.000 0.000 29.085 LGA T 16 T 16 21.221 0 0.114 0.242 22.730 0.000 0.000 19.460 LGA G 17 G 17 17.157 0 0.630 0.630 18.472 0.000 0.000 - LGA Q 18 Q 18 9.863 0 0.059 1.265 15.197 0.000 0.000 13.280 LGA N 19 N 19 4.555 0 0.044 0.967 5.842 12.727 7.955 5.426 LGA W 20 W 20 2.325 0 0.631 1.197 12.565 52.273 14.935 12.565 LGA A 21 A 21 0.525 0 0.039 0.037 1.184 82.273 85.818 - LGA S 22 S 22 1.553 0 0.045 0.075 2.414 61.818 53.939 2.414 LGA L 23 L 23 1.766 0 0.022 0.808 6.156 58.182 34.091 6.029 LGA A 24 A 24 1.047 0 0.011 0.016 1.120 73.636 72.000 - LGA A 25 A 25 0.251 0 0.021 0.020 0.898 95.455 92.727 - LGA N 26 N 26 0.531 0 0.028 0.667 1.834 86.364 78.182 1.834 LGA E 27 E 27 0.625 0 0.058 0.912 3.303 82.273 68.081 3.303 LGA L 28 L 28 0.512 0 0.219 0.809 4.134 82.273 63.182 4.134 LGA R 29 R 29 0.658 0 0.440 1.415 11.714 52.273 21.488 11.466 LGA V 30 V 30 6.965 0 0.113 1.010 9.676 1.364 0.779 9.676 LGA T 31 T 31 11.261 0 0.119 1.047 14.667 0.000 0.000 13.889 LGA E 32 E 32 16.594 0 0.655 1.101 19.701 0.000 0.000 18.086 LGA R 33 R 33 15.102 0 0.633 1.161 16.370 0.000 0.000 10.849 LGA P 34 P 34 19.215 0 0.050 0.067 22.723 0.000 0.000 22.723 LGA F 35 F 35 19.135 0 0.498 1.546 23.225 0.000 0.000 18.304 LGA W 36 W 36 25.772 0 0.652 1.252 31.178 0.000 0.000 30.101 LGA I 37 I 37 28.174 0 0.073 0.306 30.339 0.000 0.000 28.231 LGA S 38 S 38 30.568 0 0.089 0.129 31.521 0.000 0.000 29.160 LGA S 39 S 39 28.597 0 0.188 0.724 29.442 0.000 0.000 25.180 LGA F 40 F 40 31.490 0 0.061 0.902 33.684 0.000 0.000 28.192 LGA I 41 I 41 35.183 0 0.551 1.436 37.647 0.000 0.000 37.645 LGA G 42 G 42 38.073 0 0.562 0.562 38.073 0.000 0.000 - LGA R 43 R 43 36.371 0 0.109 0.951 39.419 0.000 0.000 29.321 LGA S 44 S 44 38.864 0 0.601 0.923 41.913 0.000 0.000 41.913 LGA K 45 K 45 37.749 0 0.087 0.868 39.161 0.000 0.000 38.817 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 44 176 176 100.00 344 344 100.00 44 35 SUMMARY(RMSD_GDC): 16.471 16.397 16.822 16.839 13.481 3.221 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 44 44 4.0 11 1.77 29.545 26.408 0.588 LGA_LOCAL RMSD: 1.771 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 22.527 Number of assigned atoms: 44 Std_ASGN_ATOMS RMSD: 16.471 Standard rmsd on all 44 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.004903 * X + 0.991394 * Y + 0.130821 * Z + -8.425962 Y_new = -0.426185 * X + 0.120418 * Y + -0.896586 * Z + 63.472317 Z_new = -0.904623 * X + -0.051358 * Y + 0.423108 * Z + 83.112823 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.559293 1.130494 -0.120792 [DEG: -89.3409 64.7725 -6.9209 ] ZXZ: 0.144887 1.133924 -1.627508 [DEG: 8.3014 64.9691 -93.2494 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0953s2TS041_3-D1 REMARK 2: T0953s2-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS041_3-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 44 44 4.0 11 1.77 26.408 16.47 REMARK ---------------------------------------------------------- MOLECULE T0953s2TS041_3-D1 PFRMAT TS TARGET T0953s2 MODEL 3 PARENT N/A ATOM 12 N ALA 2 -8.924 22.137 -11.124 1.00 0.00 N ATOM 14 CA ALA 2 -9.312 22.299 -9.697 1.00 0.00 C ATOM 16 C ALA 2 -10.497 21.445 -9.205 1.00 0.00 C ATOM 17 O ALA 2 -11.521 21.345 -9.892 1.00 0.00 O ATOM 15 CB ALA 2 -9.535 23.787 -9.340 1.00 0.00 C ATOM 18 N VAL 3 -10.339 20.849 -8.013 1.00 0.00 N ATOM 20 CA VAL 3 -11.354 19.987 -7.365 1.00 0.00 C ATOM 24 C VAL 3 -12.013 20.773 -6.206 1.00 0.00 C ATOM 25 O VAL 3 -13.172 20.509 -5.853 1.00 0.00 O ATOM 21 CB VAL 3 -10.718 18.640 -6.822 1.00 0.00 C ATOM 22 CG1 VAL 3 -11.803 17.578 -6.565 1.00 0.00 C ATOM 23 CG2 VAL 3 -9.684 18.087 -7.804 1.00 0.00 C ATOM 26 N GLN 4 -11.276 21.751 -5.660 1.00 0.00 N ATOM 28 CA GLN 4 -11.721 22.607 -4.543 1.00 0.00 C ATOM 36 C GLN 4 -12.367 23.922 -5.014 1.00 0.00 C ATOM 37 O GLN 4 -13.058 24.595 -4.237 1.00 0.00 O ATOM 29 CB GLN 4 -10.544 22.908 -3.601 1.00 0.00 C ATOM 30 CG GLN 4 -10.043 21.711 -2.800 1.00 0.00 C ATOM 31 CD GLN 4 -8.881 22.062 -1.892 1.00 0.00 C ATOM 32 OE1 GLN 4 -7.718 21.956 -2.284 1.00 0.00 O ATOM 33 NE2 GLN 4 -9.189 22.484 -0.670 1.00 0.00 N ATOM 38 N GLY 5 -12.170 24.248 -6.297 1.00 0.00 N ATOM 40 CA GLY 5 -12.717 25.467 -6.887 1.00 0.00 C ATOM 41 C GLY 5 -14.017 25.272 -7.666 1.00 0.00 C ATOM 42 O GLY 5 -15.070 25.208 -7.020 1.00 0.00 O ATOM 43 N PRO 6 -14.003 25.175 -9.031 1.00 0.00 N ATOM 45 CA PRO 6 -15.215 24.985 -9.856 1.00 0.00 C ATOM 48 C PRO 6 -16.003 23.680 -9.599 1.00 0.00 C ATOM 49 O PRO 6 -17.174 23.574 -9.988 1.00 0.00 O ATOM 46 CB PRO 6 -14.663 25.019 -11.284 1.00 0.00 C ATOM 47 CG PRO 6 -13.495 25.926 -11.174 1.00 0.00 C ATOM 44 CD PRO 6 -12.841 25.405 -9.920 1.00 0.00 C ATOM 50 N TRP 7 -15.353 22.719 -8.927 1.00 0.00 N ATOM 52 CA TRP 7 -15.935 21.405 -8.590 1.00 0.00 C ATOM 64 C TRP 7 -16.336 21.350 -7.102 1.00 0.00 C ATOM 65 O TRP 7 -17.237 20.587 -6.730 1.00 0.00 O ATOM 53 CB TRP 7 -14.922 20.279 -8.924 1.00 0.00 C ATOM 54 CG TRP 7 -15.505 18.853 -9.143 1.00 0.00 C ATOM 58 CD1 TRP 7 -15.612 17.857 -8.200 1.00 0.00 C ATOM 55 CD2 TRP 7 -16.009 18.287 -10.373 1.00 0.00 C ATOM 59 NE1 TRP 7 -16.143 16.721 -8.762 1.00 0.00 N ATOM 56 CE2 TRP 7 -16.399 16.947 -10.088 1.00 0.00 C ATOM 57 CE3 TRP 7 -16.172 18.778 -11.690 1.00 0.00 C ATOM 61 CZ2 TRP 7 -16.942 16.085 -11.071 1.00 0.00 C ATOM 62 CZ3 TRP 7 -16.716 17.917 -12.676 1.00 0.00 C ATOM 63 CH2 TRP 7 -17.093 16.583 -12.353 1.00 0.00 C ATOM 66 N VAL 8 -15.677 22.185 -6.275 1.00 0.00 N ATOM 68 CA VAL 8 -15.868 22.329 -4.798 1.00 0.00 C ATOM 72 C VAL 8 -15.653 21.018 -3.998 1.00 0.00 C ATOM 73 O VAL 8 -16.080 19.939 -4.428 1.00 0.00 O ATOM 69 CB VAL 8 -17.257 23.024 -4.397 1.00 0.00 C ATOM 70 CG1 VAL 8 -17.234 23.529 -2.941 1.00 0.00 C ATOM 71 CG2 VAL 8 -17.573 24.193 -5.331 1.00 0.00 C ATOM 74 N GLY 9 -14.989 21.140 -2.843 1.00 0.00 N ATOM 76 CA GLY 9 -14.713 19.996 -1.986 1.00 0.00 C ATOM 77 C GLY 9 -14.189 20.395 -0.619 1.00 0.00 C ATOM 78 O GLY 9 -14.960 20.451 0.346 1.00 0.00 O ATOM 79 N SER 10 -12.878 20.685 -0.549 1.00 0.00 N ATOM 81 CA SER 10 -12.123 21.097 0.664 1.00 0.00 C ATOM 85 C SER 10 -12.203 20.120 1.862 1.00 0.00 C ATOM 86 O SER 10 -13.302 19.768 2.311 1.00 0.00 O ATOM 82 CB SER 10 -12.489 22.536 1.100 1.00 0.00 C ATOM 83 OG SER 10 -11.646 23.008 2.140 1.00 0.00 O ATOM 87 N SER 11 -11.031 19.684 2.345 1.00 0.00 N ATOM 89 CA SER 11 -10.904 18.750 3.478 1.00 0.00 C ATOM 92 C SER 11 -10.286 19.410 4.725 1.00 0.00 C ATOM 93 O SER 11 -10.871 19.333 5.813 1.00 0.00 O ATOM 94 CB SER 11 -10.093 17.507 3.069 1.00 0.00 C ATOM 90 OG SER 11 -8.830 17.862 2.531 1.00 0.00 O ATOM 95 N TYR 12 -9.117 20.048 4.556 1.00 0.00 N ATOM 97 CA TYR 12 -8.387 20.732 5.639 1.00 0.00 C ATOM 107 C TYR 12 -8.219 22.233 5.360 1.00 0.00 C ATOM 108 O TYR 12 -8.491 23.056 6.241 1.00 0.00 O ATOM 98 CB TYR 12 -6.998 20.076 5.867 1.00 0.00 C ATOM 99 CG TYR 12 -6.994 18.607 6.307 1.00 0.00 C ATOM 100 CD1 TYR 12 -7.001 18.255 7.680 1.00 0.00 C ATOM 102 CD2 TYR 12 -6.947 17.558 5.356 1.00 0.00 C ATOM 101 CE1 TYR 12 -6.962 16.893 8.093 1.00 0.00 C ATOM 103 CE2 TYR 12 -6.907 16.194 5.761 1.00 0.00 C ATOM 104 CZ TYR 12 -6.916 15.875 7.127 1.00 0.00 C ATOM 105 OH TYR 12 -6.879 14.556 7.520 1.00 0.00 O ATOM 109 N VAL 13 -7.775 22.572 4.138 1.00 0.00 N ATOM 111 CA VAL 13 -7.552 23.962 3.692 1.00 0.00 C ATOM 115 C VAL 13 -8.667 24.425 2.715 1.00 0.00 C ATOM 116 O VAL 13 -9.054 23.673 1.810 1.00 0.00 O ATOM 112 CB VAL 13 -6.072 24.149 3.104 1.00 0.00 C ATOM 113 CG1 VAL 13 -5.843 23.322 1.822 1.00 0.00 C ATOM 114 CG2 VAL 13 -5.721 25.634 2.904 1.00 0.00 C ATOM 117 N ALA 14 -9.167 25.650 2.930 1.00 0.00 N ATOM 119 CA ALA 14 -10.226 26.265 2.113 1.00 0.00 C ATOM 121 C ALA 14 -9.721 27.538 1.420 1.00 0.00 C ATOM 122 O ALA 14 -8.941 28.295 2.011 1.00 0.00 O ATOM 120 CB ALA 14 -11.447 26.586 2.977 1.00 0.00 C ATOM 123 N GLU 15 -10.166 27.752 0.173 1.00 0.00 N ATOM 125 CA GLU 15 -9.803 28.917 -0.667 1.00 0.00 C ATOM 131 C GLU 15 -10.374 30.261 -0.171 1.00 0.00 C ATOM 132 O GLU 15 -9.698 31.293 -0.264 1.00 0.00 O ATOM 126 CB GLU 15 -10.223 28.684 -2.124 1.00 0.00 C ATOM 127 CG GLU 15 -9.421 27.609 -2.856 1.00 0.00 C ATOM 128 CD GLU 15 -9.870 27.420 -4.293 1.00 0.00 C ATOM 129 OE1 GLU 15 -9.324 28.104 -5.184 1.00 0.00 O ATOM 130 OE2 GLU 15 -10.767 26.584 -4.532 1.00 0.00 O ATOM 133 N THR 16 -11.609 30.225 0.351 1.00 0.00 N ATOM 135 CA THR 16 -12.338 31.400 0.883 1.00 0.00 C ATOM 140 C THR 16 -11.743 31.990 2.179 1.00 0.00 C ATOM 141 O THR 16 -11.715 33.216 2.349 1.00 0.00 O ATOM 136 CB THR 16 -13.849 31.086 1.097 1.00 0.00 C ATOM 137 OG1 THR 16 -13.990 29.878 1.855 1.00 0.00 O ATOM 139 CG2 THR 16 -14.568 30.939 -0.240 1.00 0.00 C ATOM 142 N GLY 17 -11.252 31.111 3.058 1.00 0.00 N ATOM 144 CA GLY 17 -10.662 31.528 4.323 1.00 0.00 C ATOM 145 C GLY 17 -9.524 30.622 4.761 1.00 0.00 C ATOM 146 O GLY 17 -9.601 29.401 4.578 1.00 0.00 O ATOM 147 N GLN 18 -8.477 31.229 5.334 1.00 0.00 N ATOM 149 CA GLN 18 -7.278 30.526 5.821 1.00 0.00 C ATOM 157 C GLN 18 -7.238 30.360 7.355 1.00 0.00 C ATOM 158 O GLN 18 -7.807 31.184 8.081 1.00 0.00 O ATOM 150 CB GLN 18 -5.982 31.205 5.297 1.00 0.00 C ATOM 151 CG GLN 18 -5.869 32.756 5.402 1.00 0.00 C ATOM 152 CD GLN 18 -6.300 33.488 4.133 1.00 0.00 C ATOM 153 OE1 GLN 18 -7.485 33.752 3.928 1.00 0.00 O ATOM 154 NE2 GLN 18 -5.335 33.814 3.280 1.00 0.00 N ATOM 159 N ASN 19 -6.567 29.296 7.819 1.00 0.00 N ATOM 161 CA ASN 19 -6.418 28.967 9.251 1.00 0.00 C ATOM 168 C ASN 19 -5.056 29.387 9.843 1.00 0.00 C ATOM 169 O ASN 19 -4.949 29.620 11.053 1.00 0.00 O ATOM 162 CB ASN 19 -6.696 27.463 9.502 1.00 0.00 C ATOM 163 CG ASN 19 -5.958 26.536 8.527 1.00 0.00 C ATOM 164 OD1 ASN 19 -6.481 26.185 7.468 1.00 0.00 O ATOM 165 ND2 ASN 19 -4.747 26.129 8.896 1.00 0.00 N ATOM 170 N TRP 20 -4.041 29.496 8.971 1.00 0.00 N ATOM 172 CA TRP 20 -2.657 29.883 9.325 1.00 0.00 C ATOM 184 C TRP 20 -2.548 31.357 9.770 1.00 0.00 C ATOM 185 O TRP 20 -1.795 31.671 10.702 1.00 0.00 O ATOM 173 CB TRP 20 -1.711 29.607 8.129 1.00 0.00 C ATOM 174 CG TRP 20 -0.201 29.414 8.456 1.00 0.00 C ATOM 178 CD1 TRP 20 0.776 30.381 8.420 1.00 0.00 C ATOM 175 CD2 TRP 20 0.471 28.187 8.821 1.00 0.00 C ATOM 179 NE1 TRP 20 1.999 29.838 8.735 1.00 0.00 N ATOM 176 CE2 TRP 20 1.850 28.500 8.986 1.00 0.00 C ATOM 177 CE3 TRP 20 0.045 26.853 9.025 1.00 0.00 C ATOM 181 CZ2 TRP 20 2.816 27.529 9.347 1.00 0.00 C ATOM 182 CZ3 TRP 20 1.010 25.879 9.386 1.00 0.00 C ATOM 183 CH2 TRP 20 2.380 26.230 9.542 1.00 0.00 C ATOM 186 N ALA 21 -3.327 32.232 9.114 1.00 0.00 N ATOM 188 CA ALA 21 -3.373 33.684 9.384 1.00 0.00 C ATOM 190 C ALA 21 -3.976 34.021 10.757 1.00 0.00 C ATOM 191 O ALA 21 -3.491 34.933 11.439 1.00 0.00 O ATOM 189 CB ALA 21 -4.146 34.396 8.282 1.00 0.00 C ATOM 192 N SER 22 -5.010 33.263 11.154 1.00 0.00 N ATOM 194 CA SER 22 -5.714 33.426 12.442 1.00 0.00 C ATOM 198 C SER 22 -4.845 33.041 13.655 1.00 0.00 C ATOM 199 O SER 22 -4.764 33.809 14.622 1.00 0.00 O ATOM 195 CB SER 22 -7.026 32.626 12.442 1.00 0.00 C ATOM 196 OG SER 22 -6.805 31.259 12.134 1.00 0.00 O ATOM 200 N LEU 23 -4.167 31.884 13.569 1.00 0.00 N ATOM 202 CA LEU 23 -3.275 31.379 14.633 1.00 0.00 C ATOM 207 C LEU 23 -1.999 32.231 14.788 1.00 0.00 C ATOM 208 O LEU 23 -1.544 32.469 15.911 1.00 0.00 O ATOM 203 CB LEU 23 -2.945 29.876 14.441 1.00 0.00 C ATOM 204 CG LEU 23 -2.399 29.159 13.185 1.00 0.00 C ATOM 205 CD1 LEU 23 -0.866 29.239 13.083 1.00 0.00 C ATOM 206 CD2 LEU 23 -2.825 27.700 13.241 1.00 0.00 C ATOM 209 N ALA 24 -1.464 32.702 13.652 1.00 0.00 N ATOM 211 CA ALA 24 -0.260 33.555 13.583 1.00 0.00 C ATOM 213 C ALA 24 -0.530 34.950 14.175 1.00 0.00 C ATOM 214 O ALA 24 0.324 35.504 14.877 1.00 0.00 O ATOM 212 CB ALA 24 0.218 33.678 12.142 1.00 0.00 C ATOM 215 N ALA 25 -1.735 35.479 13.906 1.00 0.00 N ATOM 217 CA ALA 25 -2.206 36.795 14.385 1.00 0.00 C ATOM 219 C ALA 25 -2.422 36.818 15.908 1.00 0.00 C ATOM 220 O ALA 25 -2.017 37.777 16.575 1.00 0.00 O ATOM 218 CB ALA 25 -3.489 37.193 13.662 1.00 0.00 C ATOM 221 N ASN 26 -3.062 35.762 16.436 1.00 0.00 N ATOM 223 CA ASN 26 -3.340 35.593 17.877 1.00 0.00 C ATOM 230 C ASN 26 -2.074 35.337 18.716 1.00 0.00 C ATOM 231 O ASN 26 -1.938 35.892 19.809 1.00 0.00 O ATOM 224 CB ASN 26 -4.369 34.474 18.110 1.00 0.00 C ATOM 225 CG ASN 26 -5.807 34.946 17.929 1.00 0.00 C ATOM 226 OD1 ASN 26 -6.450 35.389 18.883 1.00 0.00 O ATOM 227 ND2 ASN 26 -6.323 34.835 16.709 1.00 0.00 N ATOM 232 N GLU 27 -1.163 34.505 18.186 1.00 0.00 N ATOM 234 CA GLU 27 0.121 34.149 18.831 1.00 0.00 C ATOM 239 C GLU 27 1.139 35.304 18.900 1.00 0.00 C ATOM 240 O GLU 27 1.865 35.426 19.892 1.00 0.00 O ATOM 241 CB GLU 27 0.759 32.933 18.147 1.00 0.00 C ATOM 235 CG GLU 27 0.111 31.598 18.501 1.00 0.00 C ATOM 236 CD GLU 27 0.772 30.423 17.804 1.00 0.00 C ATOM 237 OE1 GLU 27 0.337 30.072 16.686 1.00 0.00 O ATOM 238 OE2 GLU 27 1.722 29.849 18.375 1.00 0.00 O ATOM 242 N LEU 28 1.173 36.135 17.848 1.00 0.00 N ATOM 244 CA LEU 28 2.078 37.299 17.721 1.00 0.00 C ATOM 249 C LEU 28 1.765 38.444 18.713 1.00 0.00 C ATOM 250 O LEU 28 2.692 39.091 19.216 1.00 0.00 O ATOM 245 CB LEU 28 2.062 37.826 16.255 1.00 0.00 C ATOM 246 CG LEU 28 3.104 38.629 15.412 1.00 0.00 C ATOM 247 CD1 LEU 28 3.297 40.070 15.911 1.00 0.00 C ATOM 248 CD2 LEU 28 4.456 37.905 15.273 1.00 0.00 C ATOM 251 N ARG 29 0.471 38.673 18.977 1.00 0.00 N ATOM 253 CA ARG 29 -0.009 39.730 19.891 1.00 0.00 C ATOM 266 C ARG 29 -0.193 39.267 21.350 1.00 0.00 C ATOM 267 O ARG 29 0.429 39.838 22.255 1.00 0.00 O ATOM 254 CB ARG 29 -1.309 40.357 19.361 1.00 0.00 C ATOM 255 CG ARG 29 -1.148 41.189 18.093 1.00 0.00 C ATOM 256 CD ARG 29 -2.478 41.770 17.640 1.00 0.00 C ATOM 257 NE ARG 29 -2.343 42.573 16.423 1.00 0.00 N ATOM 259 CZ ARG 29 -3.343 43.199 15.801 1.00 0.00 C ATOM 260 NH1 ARG 29 -3.093 43.899 14.702 1.00 0.00 N ATOM 263 NH2 ARG 29 -4.588 43.136 16.262 1.00 0.00 N ATOM 268 N VAL 30 -1.038 38.246 21.565 1.00 0.00 N ATOM 270 CA VAL 30 -1.324 37.679 22.899 1.00 0.00 C ATOM 274 C VAL 30 -0.716 36.276 23.115 1.00 0.00 C ATOM 275 O VAL 30 -0.733 35.442 22.198 1.00 0.00 O ATOM 271 CB VAL 30 -2.870 37.685 23.248 1.00 0.00 C ATOM 272 CG1 VAL 30 -3.309 39.093 23.622 1.00 0.00 C ATOM 273 CG2 VAL 30 -3.732 37.168 22.075 1.00 0.00 C ATOM 276 N THR 31 -0.163 36.049 24.316 1.00 0.00 N ATOM 278 CA THR 31 0.469 34.775 24.715 1.00 0.00 C ATOM 283 C THR 31 -0.427 33.944 25.666 1.00 0.00 C ATOM 284 O THR 31 -0.454 32.709 25.573 1.00 0.00 O ATOM 279 CB THR 31 1.923 35.003 25.321 1.00 0.00 C ATOM 280 OG1 THR 31 2.462 33.760 25.794 1.00 0.00 O ATOM 282 CG2 THR 31 1.933 36.050 26.458 1.00 0.00 C ATOM 285 N GLU 32 -1.154 34.640 26.552 1.00 0.00 N ATOM 287 CA GLU 32 -2.064 34.029 27.542 1.00 0.00 C ATOM 293 C GLU 32 -3.539 34.175 27.138 1.00 0.00 C ATOM 294 O GLU 32 -4.351 33.292 27.448 1.00 0.00 O ATOM 288 CB GLU 32 -1.845 34.646 28.932 1.00 0.00 C ATOM 289 CG GLU 32 -0.509 34.297 29.583 1.00 0.00 C ATOM 290 CD GLU 32 -0.341 34.929 30.952 1.00 0.00 C ATOM 291 OE1 GLU 32 -0.730 34.293 31.955 1.00 0.00 O ATOM 292 OE2 GLU 32 0.183 36.060 31.028 1.00 0.00 O ATOM 295 N ARG 33 -3.854 35.292 26.455 1.00 0.00 N ATOM 297 CA ARG 33 -5.184 35.724 25.925 1.00 0.00 C ATOM 310 C ARG 33 -5.983 36.803 26.716 1.00 0.00 C ATOM 311 O ARG 33 -6.398 37.786 26.089 1.00 0.00 O ATOM 298 CB ARG 33 -6.114 34.566 25.486 1.00 0.00 C ATOM 299 CG ARG 33 -5.666 33.837 24.219 1.00 0.00 C ATOM 300 CD ARG 33 -6.619 32.706 23.834 1.00 0.00 C ATOM 301 NE ARG 33 -6.569 31.577 24.768 1.00 0.00 N ATOM 303 CZ ARG 33 -7.296 30.464 24.667 1.00 0.00 C ATOM 304 NH1 ARG 33 -7.161 29.509 25.577 1.00 0.00 N ATOM 307 NH2 ARG 33 -8.158 30.292 23.669 1.00 0.00 N ATOM 312 N PRO 34 -6.226 36.656 28.067 1.00 0.00 N ATOM 314 CA PRO 34 -6.989 37.718 28.765 1.00 0.00 C ATOM 317 C PRO 34 -6.277 39.086 28.890 1.00 0.00 C ATOM 318 O PRO 34 -5.043 39.150 28.827 1.00 0.00 O ATOM 315 CB PRO 34 -7.236 37.112 30.150 1.00 0.00 C ATOM 316 CG PRO 34 -7.274 35.659 29.886 1.00 0.00 C ATOM 313 CD PRO 34 -6.079 35.504 28.990 1.00 0.00 C ATOM 319 N PHE 35 -7.070 40.153 29.064 1.00 0.00 N ATOM 321 CA PHE 35 -6.579 41.538 29.196 1.00 0.00 C ATOM 329 C PHE 35 -6.534 42.069 30.647 1.00 0.00 C ATOM 330 O PHE 35 -5.440 42.209 31.208 1.00 0.00 O ATOM 322 CB PHE 35 -7.362 42.504 28.253 1.00 0.00 C ATOM 323 CG PHE 35 -8.815 42.097 27.965 1.00 0.00 C ATOM 324 CD1 PHE 35 -9.875 42.542 28.789 1.00 0.00 C ATOM 325 CD2 PHE 35 -9.128 41.296 26.841 1.00 0.00 C ATOM 326 CE1 PHE 35 -11.225 42.198 28.501 1.00 0.00 C ATOM 327 CE2 PHE 35 -10.472 40.942 26.540 1.00 0.00 C ATOM 328 CZ PHE 35 -11.524 41.394 27.374 1.00 0.00 C ATOM 331 N TRP 36 -7.705 42.358 31.236 1.00 0.00 N ATOM 333 CA TRP 36 -7.830 42.868 32.618 1.00 0.00 C ATOM 345 C TRP 36 -8.799 42.024 33.470 1.00 0.00 C ATOM 346 O TRP 36 -8.872 42.204 34.695 1.00 0.00 O ATOM 334 CB TRP 36 -8.228 44.376 32.639 1.00 0.00 C ATOM 335 CG TRP 36 -9.353 44.845 31.675 1.00 0.00 C ATOM 339 CD1 TRP 36 -9.182 45.527 30.494 1.00 0.00 C ATOM 336 CD2 TRP 36 -10.782 44.705 31.846 1.00 0.00 C ATOM 340 NE1 TRP 36 -10.399 45.816 29.927 1.00 0.00 N ATOM 337 CE2 TRP 36 -11.399 45.329 30.726 1.00 0.00 C ATOM 338 CE3 TRP 36 -11.602 44.113 32.836 1.00 0.00 C ATOM 342 CZ2 TRP 36 -12.805 45.382 30.561 1.00 0.00 C ATOM 343 CZ3 TRP 36 -13.010 44.165 32.673 1.00 0.00 C ATOM 344 CH2 TRP 36 -13.591 44.799 31.538 1.00 0.00 C ATOM 347 N ILE 37 -9.496 41.082 32.818 1.00 0.00 N ATOM 349 CA ILE 37 -10.479 40.172 33.451 1.00 0.00 C ATOM 354 C ILE 37 -9.826 39.147 34.426 1.00 0.00 C ATOM 355 O ILE 37 -10.398 38.839 35.479 1.00 0.00 O ATOM 350 CB ILE 37 -11.412 39.490 32.346 1.00 0.00 C ATOM 352 CG1 ILE 37 -12.627 38.786 32.989 1.00 0.00 C ATOM 351 CG2 ILE 37 -10.586 38.572 31.394 1.00 0.00 C ATOM 353 CD1 ILE 37 -13.920 38.829 32.163 1.00 0.00 C ATOM 356 N SER 38 -8.642 38.650 34.048 1.00 0.00 N ATOM 358 CA SER 38 -7.845 37.666 34.809 1.00 0.00 C ATOM 362 C SER 38 -7.211 38.139 36.135 1.00 0.00 C ATOM 363 O SER 38 -7.143 37.361 37.095 1.00 0.00 O ATOM 359 CB SER 38 -6.763 37.058 33.908 1.00 0.00 C ATOM 360 OG SER 38 -5.940 38.061 33.334 1.00 0.00 O ATOM 364 N SER 39 -6.768 39.405 36.174 1.00 0.00 N ATOM 366 CA SER 39 -6.092 40.020 37.339 1.00 0.00 C ATOM 370 C SER 39 -6.833 40.095 38.691 1.00 0.00 C ATOM 371 O SER 39 -6.245 39.730 39.717 1.00 0.00 O ATOM 367 CB SER 39 -5.572 41.414 36.964 1.00 0.00 C ATOM 368 OG SER 39 -4.646 41.342 35.894 1.00 0.00 O ATOM 372 N PHE 40 -8.094 40.556 38.697 1.00 0.00 N ATOM 374 CA PHE 40 -8.906 40.667 39.931 1.00 0.00 C ATOM 382 C PHE 40 -9.385 39.348 40.572 1.00 0.00 C ATOM 383 O PHE 40 -9.393 39.229 41.802 1.00 0.00 O ATOM 375 CB PHE 40 -10.076 41.685 39.781 1.00 0.00 C ATOM 376 CG PHE 40 -10.959 41.502 38.542 1.00 0.00 C ATOM 377 CD1 PHE 40 -12.004 40.546 38.520 1.00 0.00 C ATOM 378 CD2 PHE 40 -10.798 42.348 37.421 1.00 0.00 C ATOM 379 CE1 PHE 40 -12.876 40.435 37.402 1.00 0.00 C ATOM 380 CE2 PHE 40 -11.662 42.250 36.297 1.00 0.00 C ATOM 381 CZ PHE 40 -12.705 41.291 36.289 1.00 0.00 C ATOM 384 N ILE 41 -9.746 38.372 39.717 1.00 0.00 N ATOM 386 CA ILE 41 -10.249 37.005 40.049 1.00 0.00 C ATOM 391 C ILE 41 -11.263 36.874 41.228 1.00 0.00 C ATOM 392 O ILE 41 -12.412 36.477 41.008 1.00 0.00 O ATOM 387 CB ILE 41 -9.056 35.913 40.074 1.00 0.00 C ATOM 389 CG1 ILE 41 -9.607 34.471 40.010 1.00 0.00 C ATOM 388 CG2 ILE 41 -8.091 36.148 41.272 1.00 0.00 C ATOM 390 CD1 ILE 41 -8.754 33.483 39.203 1.00 0.00 C ATOM 393 N GLY 42 -10.819 37.207 42.445 1.00 0.00 N ATOM 395 CA GLY 42 -11.669 37.130 43.627 1.00 0.00 C ATOM 396 C GLY 42 -11.566 38.375 44.491 1.00 0.00 C ATOM 397 O GLY 42 -10.515 38.624 45.093 1.00 0.00 O ATOM 398 N ARG 43 -12.661 39.143 44.545 1.00 0.00 N ATOM 400 CA ARG 43 -12.760 40.390 45.325 1.00 0.00 C ATOM 413 C ARG 43 -13.501 40.219 46.672 1.00 0.00 C ATOM 414 O ARG 43 -14.615 39.677 46.703 1.00 0.00 O ATOM 401 CB ARG 43 -13.380 41.526 44.473 1.00 0.00 C ATOM 402 CG ARG 43 -14.667 41.192 43.676 1.00 0.00 C ATOM 403 CD ARG 43 -15.180 42.389 42.879 1.00 0.00 C ATOM 404 NE ARG 43 -14.304 42.745 41.757 1.00 0.00 N ATOM 406 CZ ARG 43 -14.516 43.747 40.905 1.00 0.00 C ATOM 407 NH1 ARG 43 -13.646 43.970 39.928 1.00 0.00 N ATOM 410 NH2 ARG 43 -15.584 44.531 41.014 1.00 0.00 N ATOM 415 N SER 44 -12.860 40.660 47.765 1.00 0.00 N ATOM 417 CA SER 44 -13.411 40.572 49.131 1.00 0.00 C ATOM 421 C SER 44 -13.493 41.940 49.835 1.00 0.00 C ATOM 422 O SER 44 -14.557 42.298 50.352 1.00 0.00 O ATOM 418 CB SER 44 -12.587 39.585 49.983 1.00 0.00 C ATOM 419 OG SER 44 -13.210 39.317 51.229 1.00 0.00 O ATOM 423 N LYS 45 -12.381 42.693 49.837 1.00 0.00 N ATOM 425 CA LYS 45 -12.283 44.019 50.483 1.00 0.00 C ATOM 433 C LYS 45 -12.441 45.198 49.505 1.00 0.00 C ATOM 434 O LYS 45 -11.850 45.188 48.418 1.00 0.00 O ATOM 435 CB LYS 45 -10.955 44.151 51.246 1.00 0.00 C ATOM 426 CG LYS 45 -10.801 43.214 52.441 1.00 0.00 C ATOM 427 CD LYS 45 -9.435 43.379 53.100 1.00 0.00 C ATOM 428 CE LYS 45 -9.237 42.414 54.267 1.00 0.00 C ATOM 429 NZ LYS 45 -9.128 40.984 53.848 1.00 0.00 N TER END