####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS497_1 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS497_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 24 1 - 24 4.47 11.44 LONGEST_CONTINUOUS_SEGMENT: 24 2 - 25 4.86 11.02 LCS_AVERAGE: 47.41 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 2 - 17 1.83 15.56 LCS_AVERAGE: 24.81 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 13 4 - 16 0.79 16.49 LCS_AVERAGE: 18.26 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 4 24 0 3 3 4 4 5 6 7 8 9 10 12 13 15 20 21 23 27 28 29 LCS_GDT Q 2 Q 2 7 16 24 1 3 7 7 10 15 15 17 20 21 22 23 25 25 26 26 26 27 28 29 LCS_GDT E 3 E 3 12 16 24 4 7 10 14 14 15 17 17 20 21 22 23 25 25 26 26 26 27 28 29 LCS_GDT T 4 T 4 13 16 24 4 9 13 14 14 15 17 17 20 21 22 23 25 25 26 26 26 27 28 29 LCS_GDT R 5 R 5 13 16 24 4 12 13 14 14 15 17 17 20 21 22 23 25 25 26 26 26 27 28 29 LCS_GDT K 6 K 6 13 16 24 7 12 13 14 14 15 17 17 20 21 22 23 25 25 26 26 26 27 28 30 LCS_GDT K 7 K 7 13 16 24 4 12 13 14 14 15 17 17 20 21 22 23 25 25 26 26 26 27 30 31 LCS_GDT C 8 C 8 13 16 24 8 12 13 14 14 15 17 17 20 21 22 23 25 25 26 26 26 27 30 31 LCS_GDT T 9 T 9 13 16 24 8 12 13 14 14 15 17 17 20 21 22 23 25 25 26 26 26 27 30 31 LCS_GDT E 10 E 10 13 16 24 8 12 13 14 14 15 17 17 20 21 22 23 25 25 26 26 26 27 30 31 LCS_GDT M 11 M 11 13 16 24 8 12 13 14 14 15 17 17 20 21 22 23 25 25 26 26 26 27 30 31 LCS_GDT K 12 K 12 13 16 24 8 12 13 14 14 15 17 17 20 21 22 23 25 25 26 26 26 27 30 31 LCS_GDT K 13 K 13 13 16 24 8 12 13 14 14 15 17 17 20 21 22 23 25 25 26 26 26 27 30 31 LCS_GDT K 14 K 14 13 16 24 8 12 13 14 14 15 17 17 20 21 22 23 25 25 26 26 26 27 30 31 LCS_GDT F 15 F 15 13 16 24 8 12 13 14 14 15 17 17 20 21 22 23 25 25 26 26 26 27 30 31 LCS_GDT K 16 K 16 13 16 24 3 12 13 14 14 15 17 17 20 21 22 23 25 25 26 26 26 27 30 31 LCS_GDT N 17 N 17 3 16 24 3 3 4 8 14 14 17 17 20 21 22 23 25 25 26 26 26 27 30 31 LCS_GDT C 18 C 18 5 7 24 3 5 6 7 11 14 17 17 20 21 22 23 25 25 26 26 26 27 30 31 LCS_GDT E 19 E 19 5 7 24 4 5 5 6 8 13 17 17 20 21 22 23 25 25 26 26 26 27 30 31 LCS_GDT V 20 V 20 5 7 24 4 5 5 6 7 11 14 17 20 21 22 23 25 25 26 26 26 27 30 31 LCS_GDT R 21 R 21 5 7 24 4 5 5 6 8 11 14 17 19 21 22 23 25 25 26 26 26 27 30 31 LCS_GDT C 22 C 22 5 7 24 4 5 5 6 6 7 10 12 14 16 20 22 25 25 26 26 26 27 30 31 LCS_GDT D 23 D 23 4 7 24 3 4 5 6 8 10 11 15 18 19 22 23 25 25 26 26 26 27 30 31 LCS_GDT E 24 E 24 4 5 24 3 4 4 4 5 5 7 11 16 18 21 23 25 25 26 26 26 27 30 31 LCS_GDT S 25 S 25 4 6 24 3 4 4 4 5 6 6 7 8 9 10 11 13 14 16 19 22 26 28 30 LCS_GDT N 26 N 26 4 6 13 3 4 4 5 6 6 7 9 10 11 13 15 16 18 20 22 25 27 30 31 LCS_GDT H 27 H 27 4 7 13 3 4 4 7 7 7 9 10 10 13 14 16 17 19 21 23 25 27 30 31 LCS_GDT C 28 C 28 5 7 13 3 4 4 7 8 8 9 10 10 13 14 16 17 19 21 23 25 27 30 31 LCS_GDT V 29 V 29 5 7 13 3 4 6 7 8 8 9 10 10 13 14 16 17 19 21 23 25 27 30 31 LCS_GDT E 30 E 30 5 7 13 4 4 6 7 8 8 9 10 10 11 14 15 16 19 20 23 25 27 30 31 LCS_GDT V 31 V 31 5 7 13 4 4 6 7 8 8 9 10 10 11 14 15 16 18 20 23 25 27 30 31 LCS_GDT R 32 R 32 5 7 13 4 4 6 7 8 8 9 10 10 11 14 15 16 18 20 23 25 27 30 31 LCS_GDT C 33 C 33 5 7 13 4 4 6 7 8 8 9 10 10 11 14 15 16 18 20 22 24 27 27 31 LCS_GDT S 34 S 34 5 7 12 4 4 5 5 7 8 8 10 10 11 14 14 16 18 20 23 25 27 30 31 LCS_GDT D 35 D 35 4 6 12 4 4 4 4 7 8 8 9 10 12 14 15 17 19 20 23 25 27 30 31 LCS_GDT T 36 T 36 4 6 12 4 4 4 7 7 7 8 9 10 12 14 15 17 19 21 23 25 27 30 31 LCS_GDT K 37 K 37 5 6 12 4 4 5 7 7 7 8 8 11 14 14 16 17 19 22 23 25 27 30 31 LCS_GDT Y 38 Y 38 5 6 12 4 4 5 7 7 10 11 13 16 18 19 21 23 24 26 26 26 26 30 31 LCS_GDT T 39 T 39 5 6 11 4 4 6 7 8 11 14 17 20 21 22 23 25 25 26 26 26 27 28 30 LCS_GDT L 40 L 40 5 6 11 4 4 5 7 7 7 8 10 12 18 22 23 25 25 26 26 26 27 28 29 LCS_GDT C 41 C 41 5 6 11 3 3 5 5 6 7 8 8 9 10 11 11 12 13 19 19 26 27 28 29 LCS_AVERAGE LCS_A: 30.16 ( 18.26 24.81 47.41 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 12 13 14 14 15 17 17 20 21 22 23 25 25 26 26 26 27 30 31 GDT PERCENT_AT 19.51 29.27 31.71 34.15 34.15 36.59 41.46 41.46 48.78 51.22 53.66 56.10 60.98 60.98 63.41 63.41 63.41 65.85 73.17 75.61 GDT RMS_LOCAL 0.34 0.61 0.79 1.05 1.05 1.48 2.49 2.49 3.18 3.29 3.80 3.85 4.19 4.19 4.43 4.43 4.43 4.74 6.91 7.07 GDT RMS_ALL_AT 17.24 16.78 16.49 16.46 16.46 16.06 13.83 13.83 12.16 11.83 11.18 11.22 11.12 11.12 10.89 10.89 10.89 11.45 10.26 10.38 # Checking swapping # possible swapping detected: E 10 E 10 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 11.820 0 0.485 0.753 15.778 0.000 0.000 15.778 LGA Q 2 Q 2 5.136 0 0.337 1.225 7.392 9.545 14.343 1.607 LGA E 3 E 3 3.553 0 0.208 1.161 6.238 23.182 10.505 5.035 LGA T 4 T 4 0.661 0 0.065 1.292 3.745 65.909 51.169 3.064 LGA R 5 R 5 2.549 0 0.049 1.702 12.569 38.636 15.537 11.099 LGA K 6 K 6 1.489 0 0.042 0.809 7.263 74.545 38.586 6.819 LGA K 7 K 7 1.121 0 0.085 0.700 4.606 66.818 37.980 4.606 LGA C 8 C 8 2.598 0 0.048 0.491 3.473 38.636 33.333 2.743 LGA T 9 T 9 2.051 0 0.035 0.087 3.609 55.000 39.481 3.191 LGA E 10 E 10 0.887 0 0.019 0.982 5.810 77.727 42.222 5.810 LGA M 11 M 11 1.983 0 0.059 0.980 3.226 51.364 40.909 2.363 LGA K 12 K 12 2.194 0 0.061 0.775 8.820 44.545 23.232 8.820 LGA K 13 K 13 2.001 0 0.057 0.875 3.133 55.000 40.202 2.994 LGA K 14 K 14 2.042 0 0.064 0.122 4.788 48.182 27.879 4.041 LGA F 15 F 15 2.450 0 0.424 1.446 4.610 29.545 25.620 4.143 LGA K 16 K 16 1.882 0 0.508 0.954 4.534 37.727 30.505 4.534 LGA N 17 N 17 3.095 0 0.281 0.896 9.482 43.182 21.591 9.482 LGA C 18 C 18 3.697 0 0.524 1.050 8.572 15.000 10.000 8.572 LGA E 19 E 19 4.558 0 0.184 0.829 11.613 3.182 1.414 11.613 LGA V 20 V 20 6.849 0 0.069 0.938 8.755 0.000 0.000 8.755 LGA R 21 R 21 9.020 0 0.031 0.761 19.083 0.000 0.000 18.352 LGA C 22 C 22 10.822 0 0.614 0.644 12.633 0.000 0.000 8.693 LGA D 23 D 23 13.525 0 0.614 1.063 14.590 0.000 0.000 13.331 LGA E 24 E 24 14.051 0 0.627 0.946 17.620 0.000 0.000 9.972 LGA S 25 S 25 19.513 0 0.162 0.643 23.571 0.000 0.000 18.134 LGA N 26 N 26 23.600 0 0.596 0.817 24.933 0.000 0.000 21.653 LGA H 27 H 27 24.124 0 0.379 0.439 29.151 0.000 0.000 29.151 LGA C 28 C 28 23.239 0 0.086 0.716 27.250 0.000 0.000 27.250 LGA V 29 V 29 17.638 0 0.073 0.962 20.396 0.000 0.000 13.852 LGA E 30 E 30 20.378 0 0.055 0.770 27.747 0.000 0.000 25.452 LGA V 31 V 31 19.046 0 0.103 0.905 23.122 0.000 0.000 18.118 LGA R 32 R 32 21.991 0 0.255 1.074 24.351 0.000 0.000 23.115 LGA C 33 C 33 23.727 0 0.514 1.120 26.287 0.000 0.000 26.287 LGA S 34 S 34 25.187 0 0.138 0.647 25.714 0.000 0.000 23.985 LGA D 35 D 35 24.316 0 0.065 0.164 24.781 0.000 0.000 23.902 LGA T 36 T 36 23.051 0 0.564 0.834 25.938 0.000 0.000 25.938 LGA K 37 K 37 16.442 0 0.636 1.706 19.046 0.000 0.000 18.971 LGA Y 38 Y 38 13.724 0 0.048 1.233 22.093 0.000 0.000 22.093 LGA T 39 T 39 9.650 0 0.132 0.950 12.801 0.000 0.000 6.391 LGA L 40 L 40 14.571 0 0.572 0.909 19.448 0.000 0.000 18.454 LGA C 41 C 41 15.194 0 0.483 1.321 17.506 0.000 0.000 13.316 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 9.378 9.297 10.241 18.969 12.305 4.745 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 17 2.49 42.073 38.711 0.657 LGA_LOCAL RMSD: 2.488 Number of atoms: 17 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 13.832 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 9.378 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.066551 * X + -0.103077 * Y + 0.992445 * Z + -3.202345 Y_new = -0.822528 * X + -0.557377 * Y + -0.113047 * Z + -1.900363 Z_new = 0.564818 * X + -0.823836 * Y + -0.047690 * Z + 5.570509 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.651530 -0.600213 -1.628620 [DEG: -94.6257 -34.3897 -93.3130 ] ZXZ: 1.457378 1.618504 2.540600 [DEG: 83.5016 92.7335 145.5657 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS497_1 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS497_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 17 2.49 38.711 9.38 REMARK ---------------------------------------------------------- MOLECULE T0955TS497_1 PFRMAT TS TARGET T0955 MODEL 1 PARENT N/A ATOM 1 CB SER 1 -4.394 -3.849 4.446 1.00 2.06 C ATOM 2 OG SER 1 -4.378 -3.749 5.860 1.00 2.06 O ATOM 4 C SER 1 -3.557 -6.255 4.319 1.00 2.06 C ATOM 5 O SER 1 -2.412 -5.801 4.480 1.00 2.06 O ATOM 8 N SER 1 -6.002 -5.753 4.592 1.00 2.06 N ATOM 10 CA SER 1 -4.722 -5.294 3.980 1.00 2.06 C ATOM 11 N GLN 2 -3.827 -7.568 4.400 1.00 1.82 N ATOM 13 CA GLN 2 -2.767 -8.525 4.782 1.00 1.82 C ATOM 14 CB GLN 2 -3.390 -9.707 5.535 1.00 1.82 C ATOM 15 CG GLN 2 -4.411 -10.564 4.762 1.00 1.82 C ATOM 16 CD GLN 2 -4.501 -11.983 5.299 1.00 1.82 C ATOM 17 OE1 GLN 2 -3.843 -12.890 4.792 1.00 1.82 O ATOM 18 NE2 GLN 2 -5.317 -12.180 6.329 1.00 1.82 N ATOM 21 C GLN 2 -1.551 -9.063 3.969 1.00 1.82 C ATOM 22 O GLN 2 -0.436 -8.851 4.433 1.00 1.82 O ATOM 23 N GLU 3 -1.715 -9.751 2.824 1.00 1.82 N ATOM 25 CA GLU 3 -0.521 -10.283 2.098 1.00 1.82 C ATOM 26 CB GLU 3 -0.869 -11.639 1.458 1.00 1.82 C ATOM 27 CG GLU 3 -1.086 -12.779 2.450 1.00 1.82 C ATOM 28 CD GLU 3 -1.429 -14.091 1.770 1.00 1.82 C ATOM 29 OE1 GLU 3 -2.632 -14.357 1.558 1.00 1.82 O ATOM 30 OE2 GLU 3 -0.497 -14.859 1.451 1.00 1.82 O ATOM 31 C GLU 3 0.351 -9.464 1.108 1.00 1.82 C ATOM 32 O GLU 3 1.490 -9.089 1.444 1.00 1.82 O ATOM 33 N THR 4 -0.252 -9.062 -0.025 1.00 2.20 N ATOM 35 CA THR 4 0.394 -8.265 -1.095 1.00 2.20 C ATOM 36 CB THR 4 -0.443 -8.283 -2.414 1.00 2.20 C ATOM 37 OG1 THR 4 -1.107 -9.548 -2.537 1.00 2.20 O ATOM 39 CG2 THR 4 0.459 -8.092 -3.643 1.00 2.20 C ATOM 40 C THR 4 0.460 -6.862 -0.503 1.00 2.20 C ATOM 41 O THR 4 1.433 -6.113 -0.678 1.00 2.20 O ATOM 42 N ARG 5 -0.611 -6.567 0.239 1.00 1.86 N ATOM 44 CA ARG 5 -0.808 -5.313 0.936 1.00 1.86 C ATOM 45 CB ARG 5 -2.274 -5.107 1.339 1.00 1.86 C ATOM 46 CG ARG 5 -3.325 -5.099 0.185 1.00 1.86 C ATOM 47 CD ARG 5 -3.502 -3.741 -0.551 1.00 1.86 C ATOM 48 NE ARG 5 -2.295 -3.335 -1.282 1.00 1.86 N ATOM 50 CZ ARG 5 -2.246 -3.015 -2.577 1.00 1.86 C ATOM 51 NH1 ARG 5 -1.088 -2.661 -3.118 1.00 1.86 N ATOM 54 NH2 ARG 5 -3.335 -3.048 -3.338 1.00 1.86 N ATOM 57 C ARG 5 0.179 -5.124 2.092 1.00 1.86 C ATOM 58 O ARG 5 0.500 -3.991 2.398 1.00 1.86 O ATOM 59 N LYS 6 0.622 -6.216 2.748 1.00 1.59 N ATOM 61 CA LYS 6 1.616 -6.172 3.858 1.00 1.59 C ATOM 62 CB LYS 6 1.924 -7.582 4.386 1.00 1.59 C ATOM 63 CG LYS 6 2.253 -7.670 5.883 1.00 1.59 C ATOM 64 CD LYS 6 2.569 -9.103 6.297 1.00 1.59 C ATOM 65 CE LYS 6 2.938 -9.208 7.775 1.00 1.59 C ATOM 66 NZ LYS 6 4.250 -8.575 8.110 1.00 1.59 N ATOM 70 C LYS 6 2.910 -5.549 3.314 1.00 1.59 C ATOM 71 O LYS 6 3.577 -4.781 4.014 1.00 1.59 O ATOM 72 N LYS 7 3.228 -5.887 2.056 1.00 1.51 N ATOM 74 CA LYS 7 4.401 -5.362 1.340 1.00 1.51 C ATOM 75 CB LYS 7 4.592 -6.086 0.001 1.00 1.51 C ATOM 76 CG LYS 7 5.020 -7.545 0.119 1.00 1.51 C ATOM 77 CD LYS 7 5.183 -8.185 -1.251 1.00 1.51 C ATOM 78 CE LYS 7 5.611 -9.639 -1.134 1.00 1.51 C ATOM 79 NZ LYS 7 5.773 -10.280 -2.467 1.00 1.51 N ATOM 83 C LYS 7 4.143 -3.865 1.106 1.00 1.51 C ATOM 84 O LYS 7 5.019 -3.029 1.368 1.00 1.51 O ATOM 85 N CYS 8 2.904 -3.547 0.698 1.00 1.46 N ATOM 87 CA CYS 8 2.442 -2.171 0.438 1.00 1.46 C ATOM 88 CB CYS 8 1.114 -2.181 -0.342 1.00 1.46 C ATOM 89 SG CYS 8 -0.418 -1.848 0.590 1.00 1.46 S ATOM 90 C CYS 8 2.319 -1.326 1.723 1.00 1.46 C ATOM 91 O CYS 8 2.725 -0.167 1.721 1.00 1.46 O ATOM 92 N THR 9 1.835 -1.947 2.815 1.00 1.69 N ATOM 94 CA THR 9 1.617 -1.315 4.142 1.00 1.69 C ATOM 95 CB THR 9 0.764 -2.235 5.100 1.00 1.69 C ATOM 96 OG1 THR 9 -0.347 -2.776 4.376 1.00 1.69 O ATOM 98 CG2 THR 9 0.198 -1.439 6.294 1.00 1.69 C ATOM 99 C THR 9 2.956 -0.926 4.804 1.00 1.69 C ATOM 100 O THR 9 3.039 0.127 5.443 1.00 1.69 O ATOM 101 N GLU 10 3.987 -1.767 4.621 1.00 1.57 N ATOM 103 CA GLU 10 5.344 -1.536 5.157 1.00 1.57 C ATOM 104 CB GLU 10 6.215 -2.784 4.968 1.00 1.57 C ATOM 105 CG GLU 10 5.938 -3.903 5.967 1.00 1.57 C ATOM 106 CD GLU 10 6.818 -5.120 5.742 1.00 1.57 C ATOM 107 OE1 GLU 10 6.410 -6.018 4.977 1.00 1.57 O ATOM 108 OE2 GLU 10 7.916 -5.179 6.334 1.00 1.57 O ATOM 109 C GLU 10 5.953 -0.319 4.433 1.00 1.57 C ATOM 110 O GLU 10 6.563 0.555 5.067 1.00 1.57 O ATOM 111 N MET 11 5.718 -0.265 3.113 1.00 1.40 N ATOM 113 CA MET 11 6.155 0.825 2.220 1.00 1.40 C ATOM 114 CG MET 11 6.896 -0.642 0.232 1.00 1.40 C ATOM 115 SD MET 11 6.607 -1.071 -1.498 1.00 1.40 S ATOM 116 CE MET 11 7.937 -0.169 -2.309 1.00 1.40 C ATOM 117 C MET 11 5.357 2.104 2.537 1.00 1.40 C ATOM 118 O MET 11 5.919 3.205 2.530 1.00 1.40 O ATOM 119 CB MET 11 5.943 0.433 0.750 1.00 1.40 C ATOM 120 N LYS 12 4.064 1.919 2.852 1.00 1.78 N ATOM 122 CA LYS 12 3.102 2.986 3.199 1.00 1.78 C ATOM 123 CB LYS 12 1.661 2.449 3.173 1.00 1.78 C ATOM 124 CG LYS 12 1.017 2.453 1.795 1.00 1.78 C ATOM 125 CD LYS 12 -0.404 1.904 1.846 1.00 1.78 C ATOM 126 CE LYS 12 -1.068 1.895 0.471 1.00 1.78 C ATOM 127 NZ LYS 12 -1.364 3.260 -0.059 1.00 1.78 N ATOM 131 C LYS 12 3.379 3.678 4.542 1.00 1.78 C ATOM 132 O LYS 12 3.310 4.905 4.615 1.00 1.78 O ATOM 133 N LYS 13 3.681 2.891 5.589 1.00 2.00 N ATOM 135 CA LYS 13 3.986 3.418 6.933 1.00 2.00 C ATOM 136 CB LYS 13 3.878 2.333 8.033 1.00 2.00 C ATOM 137 CG LYS 13 4.771 1.066 7.905 1.00 2.00 C ATOM 138 CD LYS 13 4.755 0.183 9.174 1.00 2.00 C ATOM 139 CE LYS 13 3.682 -0.928 9.172 1.00 2.00 C ATOM 140 NZ LYS 13 3.917 -1.982 8.144 1.00 2.00 N ATOM 144 C LYS 13 5.327 4.179 6.990 1.00 2.00 C ATOM 145 O LYS 13 5.436 5.183 7.700 1.00 2.00 O ATOM 146 N LYS 14 6.330 3.680 6.249 1.00 1.93 N ATOM 148 CA LYS 14 7.670 4.301 6.157 1.00 1.93 C ATOM 149 CB LYS 14 8.680 3.335 5.517 1.00 1.93 C ATOM 150 CG LYS 14 9.063 2.145 6.391 1.00 1.93 C ATOM 151 CD LYS 14 10.066 1.239 5.685 1.00 1.93 C ATOM 152 CE LYS 14 10.461 0.039 6.541 1.00 1.93 C ATOM 153 NZ LYS 14 9.353 -0.944 6.741 1.00 1.93 N ATOM 157 C LYS 14 7.631 5.630 5.373 1.00 1.93 C ATOM 158 O LYS 14 8.196 6.632 5.823 1.00 1.93 O ATOM 159 N PHE 15 6.967 5.610 4.206 1.00 1.85 N ATOM 161 CA PHE 15 6.776 6.766 3.302 1.00 1.85 C ATOM 162 CB PHE 15 6.333 6.279 1.894 1.00 1.85 C ATOM 163 CG PHE 15 6.730 7.201 0.734 1.00 1.85 C ATOM 164 CD1 PHE 15 7.957 7.021 0.053 1.00 1.85 C ATOM 165 CD2 PHE 15 5.860 8.228 0.295 1.00 1.85 C ATOM 166 CE1 PHE 15 8.316 7.848 -1.048 1.00 1.85 C ATOM 167 CE2 PHE 15 6.204 9.062 -0.805 1.00 1.85 C ATOM 168 CZ PHE 15 7.436 8.871 -1.477 1.00 1.85 C ATOM 169 C PHE 15 5.778 7.815 3.844 1.00 1.85 C ATOM 170 O PHE 15 5.936 9.015 3.592 1.00 1.85 O ATOM 171 N LYS 16 4.741 7.323 4.549 1.00 2.19 N ATOM 173 CA LYS 16 3.603 8.071 5.161 1.00 2.19 C ATOM 174 CB LYS 16 3.967 8.829 6.481 1.00 2.19 C ATOM 175 CG LYS 16 5.031 9.942 6.431 1.00 2.19 C ATOM 176 CD LYS 16 5.249 10.558 7.804 1.00 2.19 C ATOM 177 CE LYS 16 6.299 11.656 7.756 1.00 2.19 C ATOM 178 NZ LYS 16 6.524 12.268 9.096 1.00 2.19 N ATOM 182 C LYS 16 2.713 8.893 4.192 1.00 2.19 C ATOM 183 O LYS 16 2.962 10.083 3.949 1.00 2.19 O ATOM 184 N ASN 17 1.713 8.206 3.618 1.00 2.41 N ATOM 186 CA ASN 17 0.751 8.777 2.655 1.00 2.41 C ATOM 187 CB ASN 17 0.752 7.976 1.323 1.00 2.41 C ATOM 188 CG ASN 17 0.730 6.457 1.524 1.00 2.41 C ATOM 189 OD1 ASN 17 -0.334 5.838 1.558 1.00 2.41 O ATOM 190 ND2 ASN 17 1.911 5.855 1.638 1.00 2.41 N ATOM 193 C ASN 17 -0.682 8.980 3.205 1.00 2.41 C ATOM 194 O ASN 17 -1.009 10.084 3.655 1.00 2.41 O ATOM 195 N CYS 18 -1.512 7.923 3.165 1.00 3.15 N ATOM 197 CA CYS 18 -2.909 7.953 3.635 1.00 3.15 C ATOM 198 CB CYS 18 -3.883 7.823 2.447 1.00 3.15 C ATOM 199 SG CYS 18 -5.633 8.083 2.848 1.00 3.15 S ATOM 200 C CYS 18 -3.190 6.849 4.668 1.00 3.15 C ATOM 201 O CYS 18 -3.509 7.154 5.823 1.00 3.15 O ATOM 202 N GLU 19 -3.052 5.577 4.245 1.00 2.38 N ATOM 204 CA GLU 19 -3.288 4.341 5.043 1.00 2.38 C ATOM 205 CB GLU 19 -2.209 4.117 6.126 1.00 2.38 C ATOM 206 CG GLU 19 -0.803 3.873 5.594 1.00 2.38 C ATOM 207 CD GLU 19 0.212 3.657 6.701 1.00 2.38 C ATOM 208 OE1 GLU 19 0.415 2.493 7.106 1.00 2.38 O ATOM 209 OE2 GLU 19 0.811 4.652 7.165 1.00 2.38 O ATOM 210 C GLU 19 -4.691 4.216 5.668 1.00 2.38 C ATOM 211 O GLU 19 -5.161 5.144 6.343 1.00 2.38 O ATOM 212 N VAL 20 -5.349 3.075 5.420 1.00 2.43 N ATOM 214 CA VAL 20 -6.696 2.775 5.942 1.00 2.43 C ATOM 215 CB VAL 20 -7.730 2.401 4.805 1.00 2.43 C ATOM 216 CG1 VAL 20 -8.226 3.665 4.128 1.00 2.43 C ATOM 217 CG2 VAL 20 -7.113 1.446 3.757 1.00 2.43 C ATOM 218 C VAL 20 -6.650 1.680 7.025 1.00 2.43 C ATOM 219 O VAL 20 -6.048 0.616 6.817 1.00 2.43 O ATOM 220 N ARG 21 -7.248 1.980 8.184 1.00 2.81 N ATOM 222 CA ARG 21 -7.298 1.058 9.330 1.00 2.81 C ATOM 223 CB ARG 21 -6.552 1.646 10.556 1.00 2.81 C ATOM 224 CG ARG 21 -6.755 3.158 10.826 1.00 2.81 C ATOM 225 CD ARG 21 -6.154 3.603 12.154 1.00 2.81 C ATOM 226 NE ARG 21 -6.953 3.168 13.303 1.00 2.81 N ATOM 228 CZ ARG 21 -7.123 3.864 14.428 1.00 2.81 C ATOM 229 NH1 ARG 21 -7.872 3.361 15.400 1.00 2.81 N ATOM 232 NH2 ARG 21 -6.552 5.053 14.596 1.00 2.81 N ATOM 235 C ARG 21 -8.727 0.630 9.706 1.00 2.81 C ATOM 236 O ARG 21 -9.607 1.478 9.909 1.00 2.81 O ATOM 237 N CYS 22 -8.939 -0.692 9.749 1.00 3.19 N ATOM 239 CA CYS 22 -10.215 -1.329 10.112 1.00 3.19 C ATOM 240 CB CYS 22 -10.857 -2.010 8.891 1.00 3.19 C ATOM 241 SG CYS 22 -11.223 -0.890 7.520 1.00 3.19 S ATOM 242 C CYS 22 -9.895 -2.376 11.184 1.00 3.19 C ATOM 243 O CYS 22 -10.661 -2.551 12.140 1.00 3.19 O ATOM 244 N ASP 23 -8.752 -3.055 10.999 1.00 3.69 N ATOM 246 CA ASP 23 -8.229 -4.112 11.886 1.00 3.69 C ATOM 247 CB ASP 23 -8.657 -5.520 11.392 1.00 3.69 C ATOM 248 CG ASP 23 -8.582 -5.679 9.866 1.00 3.69 C ATOM 249 OD1 ASP 23 -9.611 -5.458 9.191 1.00 3.69 O ATOM 250 OD2 ASP 23 -7.500 -6.032 9.348 1.00 3.69 O ATOM 251 C ASP 23 -6.695 -4.040 12.003 1.00 3.69 C ATOM 252 O ASP 23 -6.137 -4.349 13.064 1.00 3.69 O ATOM 253 N GLU 24 -6.042 -3.625 10.909 1.00 4.26 N ATOM 255 CA GLU 24 -4.574 -3.505 10.801 1.00 4.26 C ATOM 256 CB GLU 24 -4.095 -4.129 9.477 1.00 4.26 C ATOM 257 CG GLU 24 -4.271 -5.643 9.386 1.00 4.26 C ATOM 258 CD GLU 24 -3.891 -6.200 8.028 1.00 4.26 C ATOM 259 OE1 GLU 24 -4.791 -6.338 7.173 1.00 4.26 O ATOM 260 OE2 GLU 24 -2.698 -6.507 7.818 1.00 4.26 O ATOM 261 C GLU 24 -4.074 -2.051 10.911 1.00 4.26 C ATOM 262 O GLU 24 -4.888 -1.123 10.963 1.00 4.26 O ATOM 263 N SER 25 -2.738 -1.878 10.948 1.00 5.84 N ATOM 265 CA SER 25 -1.991 -0.592 11.046 1.00 5.84 C ATOM 266 CB SER 25 -2.204 0.303 9.800 1.00 5.84 C ATOM 267 OG SER 25 -3.553 0.717 9.660 1.00 5.84 O ATOM 269 C SER 25 -2.136 0.233 12.346 1.00 5.84 C ATOM 270 O SER 25 -1.306 1.115 12.613 1.00 5.84 O ATOM 271 N ASN 26 -3.153 -0.088 13.157 1.00 5.79 N ATOM 273 CA ASN 26 -3.431 0.601 14.433 1.00 5.79 C ATOM 274 CB ASN 26 -4.941 0.936 14.561 1.00 5.79 C ATOM 275 CG ASN 26 -5.856 -0.285 14.381 1.00 5.79 C ATOM 276 OD1 ASN 26 -6.184 -0.977 15.346 1.00 5.79 O ATOM 277 ND2 ASN 26 -6.274 -0.537 13.146 1.00 5.79 N ATOM 280 C ASN 26 -2.896 -0.152 15.677 1.00 5.79 C ATOM 281 O ASN 26 -3.414 -1.225 16.023 1.00 5.79 O ATOM 282 N HIS 27 -1.856 0.418 16.319 1.00 5.48 N ATOM 284 CA HIS 27 -1.151 -0.108 17.528 1.00 5.48 C ATOM 285 CG HIS 27 -1.901 1.801 19.068 1.00 5.48 C ATOM 286 CD2 HIS 27 -2.937 2.675 19.090 1.00 5.48 C ATOM 287 ND1 HIS 27 -0.772 2.545 19.336 1.00 5.48 N ATOM 289 CE1 HIS 27 -1.108 3.811 19.511 1.00 5.48 C ATOM 290 NE2 HIS 27 -2.416 3.916 19.367 1.00 5.48 N ATOM 292 C HIS 27 -0.884 -1.629 17.510 1.00 5.48 C ATOM 293 O HIS 27 -1.828 -2.426 17.626 1.00 5.48 O ATOM 294 CB HIS 27 -1.865 0.317 18.838 1.00 5.48 C ATOM 295 N CYS 28 0.396 -2.018 17.336 1.00 5.24 N ATOM 297 CA CYS 28 0.881 -3.428 17.238 1.00 5.24 C ATOM 298 CB CYS 28 0.509 -4.282 18.471 1.00 5.24 C ATOM 299 SG CYS 28 1.232 -5.945 18.504 1.00 5.24 S ATOM 300 C CYS 28 0.351 -4.065 15.937 1.00 5.24 C ATOM 301 O CYS 28 -0.782 -3.769 15.535 1.00 5.24 O ATOM 302 N VAL 29 1.139 -4.938 15.293 1.00 4.71 N ATOM 304 CA VAL 29 0.710 -5.545 14.018 1.00 4.71 C ATOM 305 CB VAL 29 1.774 -5.327 12.861 1.00 4.71 C ATOM 306 CG1 VAL 29 1.720 -3.887 12.372 1.00 4.71 C ATOM 307 CG2 VAL 29 3.207 -5.669 13.325 1.00 4.71 C ATOM 308 C VAL 29 0.250 -7.017 14.047 1.00 4.71 C ATOM 309 O VAL 29 0.955 -7.914 14.529 1.00 4.71 O ATOM 310 N GLU 30 -0.990 -7.196 13.568 1.00 4.18 N ATOM 312 CA GLU 30 -1.715 -8.472 13.429 1.00 4.18 C ATOM 313 CB GLU 30 -2.886 -8.562 14.422 1.00 4.18 C ATOM 314 CG GLU 30 -2.474 -8.677 15.887 1.00 4.18 C ATOM 315 CD GLU 30 -3.663 -8.766 16.826 1.00 4.18 C ATOM 316 OE1 GLU 30 -4.139 -7.707 17.288 1.00 4.18 O ATOM 317 OE2 GLU 30 -4.121 -9.895 17.104 1.00 4.18 O ATOM 318 C GLU 30 -2.264 -8.446 11.998 1.00 4.18 C ATOM 319 O GLU 30 -2.607 -7.362 11.507 1.00 4.18 O ATOM 320 N VAL 31 -2.329 -9.602 11.325 1.00 4.10 N ATOM 322 CA VAL 31 -2.847 -9.657 9.943 1.00 4.10 C ATOM 323 CB VAL 31 -1.818 -10.329 8.942 1.00 4.10 C ATOM 324 CG1 VAL 31 -0.694 -9.356 8.626 1.00 4.10 C ATOM 325 CG2 VAL 31 -1.230 -11.640 9.514 1.00 4.10 C ATOM 326 C VAL 31 -4.248 -10.302 9.826 1.00 4.10 C ATOM 327 O VAL 31 -4.470 -11.437 10.274 1.00 4.10 O ATOM 328 N ARG 32 -5.183 -9.521 9.265 1.00 3.75 N ATOM 330 CA ARG 32 -6.591 -9.896 9.028 1.00 3.75 C ATOM 331 CB ARG 32 -7.539 -9.195 10.017 1.00 3.75 C ATOM 332 CG ARG 32 -7.481 -9.757 11.442 1.00 3.75 C ATOM 333 CD ARG 32 -8.531 -9.140 12.363 1.00 3.75 C ATOM 334 NE ARG 32 -9.898 -9.547 12.022 1.00 3.75 N ATOM 336 CZ ARG 32 -10.997 -9.161 12.669 1.00 3.75 C ATOM 337 NH1 ARG 32 -12.182 -9.598 12.264 1.00 3.75 N ATOM 340 NH2 ARG 32 -10.930 -8.345 13.717 1.00 3.75 N ATOM 343 C ARG 32 -6.982 -9.550 7.588 1.00 3.75 C ATOM 344 O ARG 32 -6.498 -8.549 7.046 1.00 3.75 O ATOM 345 N CYS 33 -7.836 -10.381 6.976 1.00 3.41 N ATOM 347 CA CYS 33 -8.301 -10.187 5.590 1.00 3.41 C ATOM 348 CB CYS 33 -8.065 -11.457 4.761 1.00 3.41 C ATOM 349 SG CYS 33 -8.824 -12.955 5.437 1.00 3.41 S ATOM 350 C CYS 33 -9.774 -9.750 5.487 1.00 3.41 C ATOM 351 O CYS 33 -10.674 -10.437 5.994 1.00 3.41 O ATOM 352 N SER 34 -9.988 -8.577 4.872 1.00 4.07 N ATOM 354 CA SER 34 -11.313 -7.970 4.647 1.00 4.07 C ATOM 355 CB SER 34 -11.555 -6.793 5.611 1.00 4.07 C ATOM 356 OG SER 34 -10.497 -5.848 5.560 1.00 4.07 O ATOM 358 C SER 34 -11.404 -7.489 3.190 1.00 4.07 C ATOM 359 O SER 34 -12.451 -7.643 2.548 1.00 4.07 O ATOM 360 N ASP 35 -10.299 -6.914 2.692 1.00 4.97 N ATOM 362 CA ASP 35 -10.168 -6.390 1.318 1.00 4.97 C ATOM 363 CB ASP 35 -9.871 -4.866 1.326 1.00 4.97 C ATOM 364 CG ASP 35 -8.755 -4.466 2.303 1.00 4.97 C ATOM 365 OD1 ASP 35 -9.065 -4.164 3.477 1.00 4.97 O ATOM 366 OD2 ASP 35 -7.576 -4.442 1.888 1.00 4.97 O ATOM 367 C ASP 35 -9.099 -7.165 0.521 1.00 4.97 C ATOM 368 O ASP 35 -9.080 -7.117 -0.715 1.00 4.97 O ATOM 369 N THR 36 -8.246 -7.905 1.254 1.00 4.62 N ATOM 371 CA THR 36 -7.122 -8.746 0.752 1.00 4.62 C ATOM 372 CB THR 36 -7.595 -10.101 0.097 1.00 4.62 C ATOM 373 OG1 THR 36 -8.504 -9.828 -0.977 1.00 4.62 O ATOM 375 CG2 THR 36 -8.278 -10.994 1.120 1.00 4.62 C ATOM 376 C THR 36 -6.072 -8.066 -0.157 1.00 4.62 C ATOM 377 O THR 36 -4.908 -7.943 0.239 1.00 4.62 O ATOM 378 N LYS 37 -6.493 -7.635 -1.357 1.00 5.61 N ATOM 380 CA LYS 37 -5.624 -6.973 -2.348 1.00 5.61 C ATOM 381 CB LYS 37 -5.476 -7.840 -3.611 1.00 5.61 C ATOM 382 CG LYS 37 -4.686 -9.129 -3.413 1.00 5.61 C ATOM 383 CD LYS 37 -4.588 -9.924 -4.711 1.00 5.61 C ATOM 384 CE LYS 37 -3.800 -11.220 -4.537 1.00 5.61 C ATOM 385 NZ LYS 37 -4.499 -12.236 -3.692 1.00 5.61 N ATOM 389 C LYS 37 -6.165 -5.588 -2.730 1.00 5.61 C ATOM 390 O LYS 37 -5.417 -4.749 -3.251 1.00 5.61 O ATOM 391 N TYR 38 -7.451 -5.350 -2.435 1.00 4.31 N ATOM 393 CA TYR 38 -8.153 -4.081 -2.721 1.00 4.31 C ATOM 394 CB TYR 38 -9.686 -4.290 -2.686 1.00 4.31 C ATOM 395 CG TYR 38 -10.278 -5.225 -3.747 1.00 4.31 C ATOM 396 CD1 TYR 38 -10.430 -6.613 -3.500 1.00 4.31 C ATOM 397 CE1 TYR 38 -11.011 -7.477 -4.469 1.00 4.31 C ATOM 398 CD2 TYR 38 -10.723 -4.725 -4.997 1.00 4.31 C ATOM 399 CE2 TYR 38 -11.304 -5.582 -5.972 1.00 4.31 C ATOM 400 CZ TYR 38 -11.443 -6.952 -5.698 1.00 4.31 C ATOM 401 OH TYR 38 -12.004 -7.783 -6.642 1.00 4.31 O ATOM 403 C TYR 38 -7.753 -2.951 -1.757 1.00 4.31 C ATOM 404 O TYR 38 -7.537 -3.201 -0.563 1.00 4.31 O ATOM 405 N THR 39 -7.651 -1.725 -2.290 1.00 3.50 N ATOM 407 CA THR 39 -7.263 -0.525 -1.523 1.00 3.50 C ATOM 408 CB THR 39 -6.077 0.239 -2.198 1.00 3.50 C ATOM 409 OG1 THR 39 -6.349 0.421 -3.594 1.00 3.50 O ATOM 411 CG2 THR 39 -4.774 -0.525 -2.025 1.00 3.50 C ATOM 412 C THR 39 -8.427 0.456 -1.297 1.00 3.50 C ATOM 413 O THR 39 -9.273 0.648 -2.183 1.00 3.50 O ATOM 414 N LEU 40 -8.469 1.030 -0.087 1.00 4.16 N ATOM 416 CA LEU 40 -9.481 2.007 0.348 1.00 4.16 C ATOM 417 CB LEU 40 -10.157 1.517 1.655 1.00 4.16 C ATOM 418 CG LEU 40 -11.605 1.876 2.057 1.00 4.16 C ATOM 419 CD1 LEU 40 -12.242 0.676 2.737 1.00 4.16 C ATOM 420 CD2 LEU 40 -11.672 3.112 2.971 1.00 4.16 C ATOM 421 C LEU 40 -8.750 3.352 0.570 1.00 4.16 C ATOM 422 O LEU 40 -9.392 4.407 0.673 1.00 4.16 O ATOM 423 N CYS 41 -7.410 3.286 0.603 1.00 5.07 N ATOM 425 CA CYS 41 -6.514 4.439 0.805 1.00 5.07 C ATOM 426 CB CYS 41 -5.367 4.049 1.751 1.00 5.07 C ATOM 427 SG CYS 41 -4.416 2.597 1.236 1.00 5.07 S ATOM 428 C CYS 41 -5.950 4.983 -0.511 1.00 5.07 C ATOM 429 O CYS 41 -5.735 4.176 -1.440 1.00 5.07 O ATOM 430 OXT CYS 41 -5.743 6.213 -0.600 1.00 5.07 O TER END