####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS498_1 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS498_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 37 5 - 41 4.97 6.32 LCS_AVERAGE: 86.91 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 1 - 17 1.99 8.50 LCS_AVERAGE: 38.25 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 5 - 16 0.91 9.31 LCS_AVERAGE: 19.39 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 17 23 0 6 12 14 16 18 20 21 23 25 25 27 28 29 30 31 33 35 36 38 LCS_GDT Q 2 Q 2 3 17 23 1 3 5 5 13 17 19 21 23 25 25 27 28 29 30 31 33 35 36 38 LCS_GDT E 3 E 3 3 17 23 0 3 5 11 15 18 20 21 23 25 25 27 30 32 34 36 37 38 39 39 LCS_GDT T 4 T 4 3 17 23 1 3 5 12 15 18 20 21 23 25 25 27 30 31 33 36 37 38 39 39 LCS_GDT R 5 R 5 12 17 37 1 5 12 14 16 18 20 21 23 25 25 27 28 29 32 33 36 37 39 39 LCS_GDT K 6 K 6 12 17 37 3 10 12 14 16 18 20 21 23 25 25 27 29 31 33 35 37 38 39 39 LCS_GDT K 7 K 7 12 17 37 3 10 12 14 16 18 20 21 23 25 25 27 30 32 34 36 37 38 39 39 LCS_GDT C 8 C 8 12 17 37 8 10 12 14 16 18 20 21 23 25 26 28 30 33 34 36 37 38 39 39 LCS_GDT T 9 T 9 12 17 37 8 10 12 14 16 18 20 21 23 26 29 32 32 33 34 36 37 38 39 39 LCS_GDT E 10 E 10 12 17 37 8 10 12 14 16 18 20 21 23 26 29 32 32 33 34 36 37 38 39 39 LCS_GDT M 11 M 11 12 17 37 8 10 12 14 16 18 20 25 29 29 30 32 32 33 34 36 37 38 39 39 LCS_GDT K 12 K 12 12 17 37 8 10 12 14 16 18 23 27 29 30 30 32 32 33 34 36 37 38 39 39 LCS_GDT K 13 K 13 12 17 37 8 10 12 14 16 19 24 27 29 30 30 32 32 33 34 36 37 38 39 39 LCS_GDT K 14 K 14 12 17 37 8 10 12 14 16 18 24 27 29 30 30 32 32 33 34 36 37 38 39 39 LCS_GDT F 15 F 15 12 17 37 8 10 12 16 22 23 25 27 29 30 30 32 32 33 34 36 37 38 39 39 LCS_GDT K 16 K 16 12 17 37 4 10 13 16 22 23 25 27 29 30 30 32 32 33 34 36 37 38 39 39 LCS_GDT N 17 N 17 9 17 37 4 8 13 17 22 23 25 27 29 30 30 32 32 33 34 36 37 38 39 39 LCS_GDT C 18 C 18 9 16 37 4 8 13 17 22 23 25 27 29 30 30 32 32 33 34 36 37 38 39 39 LCS_GDT E 19 E 19 9 15 37 4 8 13 17 22 23 25 27 29 30 30 32 32 33 34 36 37 38 39 39 LCS_GDT V 20 V 20 9 14 37 4 8 13 17 22 23 25 27 29 30 30 32 32 33 34 36 37 38 39 39 LCS_GDT R 21 R 21 9 14 37 4 8 13 17 22 23 25 27 29 30 30 32 32 33 34 36 37 38 39 39 LCS_GDT C 22 C 22 9 14 37 3 6 13 17 22 23 25 27 29 30 30 32 32 33 34 36 37 38 39 39 LCS_GDT D 23 D 23 9 14 37 4 8 13 17 22 23 25 27 29 30 30 32 32 33 34 36 37 38 39 39 LCS_GDT E 24 E 24 4 14 37 4 4 8 15 22 23 25 27 29 30 30 32 32 33 34 36 37 38 39 39 LCS_GDT S 25 S 25 4 14 37 4 8 10 15 22 23 25 27 29 30 30 32 32 33 34 36 37 38 39 39 LCS_GDT N 26 N 26 4 14 37 4 4 10 12 19 23 24 27 29 30 30 32 32 33 34 36 37 38 39 39 LCS_GDT H 27 H 27 5 15 37 4 8 13 17 22 23 25 27 29 30 30 32 32 33 34 36 37 38 39 39 LCS_GDT C 28 C 28 5 15 37 4 8 13 17 22 23 25 27 29 30 30 32 32 33 34 36 37 38 39 39 LCS_GDT V 29 V 29 7 15 37 4 5 8 13 15 20 21 24 27 30 30 32 32 33 34 36 37 38 39 39 LCS_GDT E 30 E 30 7 15 37 4 5 13 17 22 23 25 27 29 30 30 32 32 33 34 36 37 38 39 39 LCS_GDT V 31 V 31 7 15 37 4 8 13 17 22 23 25 27 29 30 30 32 32 33 34 36 37 38 39 39 LCS_GDT R 32 R 32 7 15 37 4 8 13 17 22 23 25 27 29 30 30 32 32 33 34 36 37 38 39 39 LCS_GDT C 33 C 33 7 15 37 3 6 13 17 22 23 25 27 29 30 30 32 32 33 34 36 37 38 39 39 LCS_GDT S 34 S 34 7 15 37 4 7 12 17 22 23 25 27 29 30 30 32 32 33 34 36 37 38 39 39 LCS_GDT D 35 D 35 7 15 37 4 5 8 17 19 21 25 25 26 30 30 31 32 33 34 36 37 38 39 39 LCS_GDT T 36 T 36 6 15 37 3 5 12 17 22 23 25 27 29 30 30 32 32 33 34 36 37 38 39 39 LCS_GDT K 37 K 37 6 15 37 4 5 7 16 22 23 25 27 29 30 30 32 32 33 34 36 37 38 39 39 LCS_GDT Y 38 Y 38 6 15 37 4 5 12 17 22 23 25 27 29 30 30 32 32 33 34 36 37 38 39 39 LCS_GDT T 39 T 39 6 15 37 4 6 12 17 22 23 25 27 29 30 30 32 32 33 34 36 37 38 39 39 LCS_GDT L 40 L 40 6 15 37 4 5 10 16 22 23 25 27 29 30 30 32 32 33 34 36 37 38 39 39 LCS_GDT C 41 C 41 6 15 37 0 5 8 14 20 23 25 27 29 30 30 32 32 33 34 36 37 38 39 39 LCS_AVERAGE LCS_A: 48.19 ( 19.39 38.25 86.91 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 10 13 17 22 23 25 27 29 30 30 32 32 33 34 36 37 38 39 39 GDT PERCENT_AT 19.51 24.39 31.71 41.46 53.66 56.10 60.98 65.85 70.73 73.17 73.17 78.05 78.05 80.49 82.93 87.80 90.24 92.68 95.12 95.12 GDT RMS_LOCAL 0.23 0.39 0.93 1.37 1.78 1.90 2.12 2.51 2.83 2.90 2.90 3.56 3.39 3.66 3.94 4.56 4.78 5.00 5.23 5.23 GDT RMS_ALL_AT 9.40 9.50 8.90 9.84 9.28 9.08 9.20 8.42 7.97 8.37 8.37 7.34 7.77 7.43 7.18 6.54 6.36 6.19 6.07 6.07 # Checking swapping # possible swapping detected: F 15 F 15 # possible swapping detected: E 19 E 19 # possible swapping detected: E 24 E 24 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 23.457 0 0.181 0.533 23.809 0.000 0.000 22.690 LGA Q 2 Q 2 23.014 0 0.298 0.953 30.455 0.000 0.000 30.455 LGA E 3 E 3 15.626 0 0.161 1.154 18.243 0.000 0.000 16.056 LGA T 4 T 4 13.946 0 0.116 1.242 16.598 0.000 0.000 16.598 LGA R 5 R 5 17.206 0 0.140 1.081 26.344 0.000 0.000 26.344 LGA K 6 K 6 16.505 0 0.116 1.065 17.700 0.000 0.000 17.651 LGA K 7 K 7 13.265 0 0.073 0.622 15.668 0.000 0.000 15.668 LGA C 8 C 8 11.399 0 0.089 0.122 12.299 0.000 0.000 11.536 LGA T 9 T 9 10.858 0 0.046 0.086 13.199 0.000 0.000 13.199 LGA E 10 E 10 9.823 0 0.037 0.157 13.237 0.000 0.000 11.893 LGA M 11 M 11 6.487 0 0.088 1.139 7.937 1.364 0.682 6.302 LGA K 12 K 12 5.519 0 0.014 0.591 9.793 3.182 1.414 9.793 LGA K 13 K 13 4.794 0 0.031 0.811 11.699 7.727 3.434 11.009 LGA K 14 K 14 4.412 0 0.013 0.629 11.777 10.909 4.848 11.777 LGA F 15 F 15 1.097 0 0.377 0.971 4.629 66.818 45.785 4.453 LGA K 16 K 16 1.516 0 0.018 0.847 6.231 55.000 33.737 6.231 LGA N 17 N 17 1.541 0 0.055 1.120 2.641 51.364 50.227 2.641 LGA C 18 C 18 2.158 0 0.125 0.332 3.070 41.364 39.091 3.070 LGA E 19 E 19 2.132 0 0.067 0.706 3.278 44.545 40.606 3.278 LGA V 20 V 20 2.018 0 0.029 0.265 2.392 38.182 38.182 2.154 LGA R 21 R 21 1.924 0 0.160 1.458 8.726 41.818 20.992 5.270 LGA C 22 C 22 2.555 0 0.162 0.821 3.391 41.818 33.939 3.328 LGA D 23 D 23 2.567 0 0.208 0.268 4.685 27.727 16.364 4.571 LGA E 24 E 24 1.887 0 0.181 0.845 2.535 45.000 50.101 1.395 LGA S 25 S 25 1.577 0 0.350 0.328 1.848 58.182 55.758 1.848 LGA N 26 N 26 3.473 0 0.114 1.121 9.444 40.455 20.227 7.021 LGA H 27 H 27 3.833 0 0.569 1.630 9.196 18.182 7.273 9.196 LGA C 28 C 28 2.190 0 0.069 0.218 4.370 22.273 36.061 2.832 LGA V 29 V 29 5.366 0 0.252 0.367 8.703 8.636 4.935 8.703 LGA E 30 E 30 2.601 0 0.042 0.680 3.708 20.909 23.434 3.180 LGA V 31 V 31 2.268 0 0.055 1.186 3.310 44.545 35.844 2.701 LGA R 32 R 32 1.736 0 0.107 1.158 7.843 55.000 33.388 7.843 LGA C 33 C 33 1.077 0 0.494 0.802 2.309 62.727 63.939 0.872 LGA S 34 S 34 2.786 0 0.266 0.724 5.069 17.727 16.667 3.691 LGA D 35 D 35 5.259 0 0.218 0.885 6.773 4.091 2.045 5.237 LGA T 36 T 36 2.275 0 0.183 1.061 3.724 36.364 31.688 3.724 LGA K 37 K 37 2.440 0 0.184 1.385 5.924 38.182 21.010 5.924 LGA Y 38 Y 38 1.967 0 0.069 0.543 4.039 47.727 34.545 4.039 LGA T 39 T 39 1.668 0 0.151 1.242 3.956 45.000 36.104 3.633 LGA L 40 L 40 1.340 0 0.250 1.259 4.698 61.818 42.273 4.698 LGA C 41 C 41 3.280 0 0.443 0.857 6.571 20.455 13.247 6.571 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 5.902 5.754 6.788 26.319 20.923 10.687 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 27 2.51 54.878 53.219 1.034 LGA_LOCAL RMSD: 2.511 Number of atoms: 27 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 8.420 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 5.902 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.990882 * X + 0.124063 * Y + -0.052538 * Z + 3.759274 Y_new = 0.133440 * X + -0.957531 * Y + 0.255593 * Z + 1.890350 Z_new = -0.018597 * X + -0.260273 * Y + -0.965356 * Z + -2.041419 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.133862 0.018598 -2.878241 [DEG: 7.6697 1.0656 -164.9110 ] ZXZ: -2.938863 2.877600 -3.070262 [DEG: -168.3844 164.8743 -175.9130 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS498_1 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS498_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 27 2.51 53.219 5.90 REMARK ---------------------------------------------------------- MOLECULE T0955TS498_1 PFRMAT TS TARGET T0955 MODEL 1 PARENT N/A ATOM 1 CB SER 1 20.327 -8.553 -7.519 1.00 3.11 C ATOM 2 OG SER 1 19.351 -9.201 -6.724 1.00 3.11 O ATOM 4 C SER 1 20.009 -6.128 -6.677 1.00 3.11 C ATOM 5 O SER 1 19.780 -5.624 -5.571 1.00 3.11 O ATOM 8 N SER 1 21.461 -7.789 -5.446 1.00 3.11 N ATOM 10 CA SER 1 20.950 -7.360 -6.779 1.00 3.11 C ATOM 11 N GLN 2 19.475 -5.668 -7.819 1.00 4.00 N ATOM 13 CA GLN 2 18.642 -4.447 -7.949 1.00 4.00 C ATOM 14 CB GLN 2 18.754 -3.934 -9.393 1.00 4.00 C ATOM 15 CG GLN 2 20.055 -3.214 -9.706 1.00 4.00 C ATOM 16 CD GLN 2 20.121 -2.727 -11.140 1.00 4.00 C ATOM 17 OE1 GLN 2 19.726 -1.601 -11.443 1.00 4.00 O ATOM 18 NE2 GLN 2 20.624 -3.573 -12.033 1.00 4.00 N ATOM 21 C GLN 2 17.192 -4.155 -7.473 1.00 4.00 C ATOM 22 O GLN 2 16.987 -3.115 -6.833 1.00 4.00 O ATOM 23 N GLU 3 16.212 -5.032 -7.743 1.00 4.09 N ATOM 25 CA GLU 3 14.783 -4.751 -7.420 1.00 4.09 C ATOM 26 CB GLU 3 13.870 -5.561 -8.358 1.00 4.09 C ATOM 27 CG GLU 3 13.742 -4.995 -9.766 1.00 4.09 C ATOM 28 CD GLU 3 12.832 -5.825 -10.653 1.00 4.09 C ATOM 29 OE1 GLU 3 11.614 -5.550 -10.682 1.00 4.09 O ATOM 30 OE2 GLU 3 13.336 -6.753 -11.321 1.00 4.09 O ATOM 31 C GLU 3 14.085 -4.675 -6.042 1.00 4.09 C ATOM 32 O GLU 3 13.374 -3.690 -5.803 1.00 4.09 O ATOM 33 N THR 4 14.278 -5.650 -5.142 1.00 3.24 N ATOM 35 CA THR 4 13.549 -5.656 -3.845 1.00 3.24 C ATOM 36 CB THR 4 13.361 -7.119 -3.313 1.00 3.24 C ATOM 37 OG1 THR 4 14.614 -7.812 -3.358 1.00 3.24 O ATOM 39 CG2 THR 4 12.319 -7.880 -4.134 1.00 3.24 C ATOM 40 C THR 4 13.834 -4.757 -2.616 1.00 3.24 C ATOM 41 O THR 4 12.906 -4.085 -2.145 1.00 3.24 O ATOM 42 N ARG 5 15.078 -4.713 -2.117 1.00 2.12 N ATOM 44 CA ARG 5 15.416 -3.940 -0.900 1.00 2.12 C ATOM 45 CB ARG 5 16.600 -4.601 -0.180 1.00 2.12 C ATOM 46 CG ARG 5 16.204 -5.777 0.717 1.00 2.12 C ATOM 47 CD ARG 5 17.419 -6.385 1.399 1.00 2.12 C ATOM 48 NE ARG 5 17.060 -7.514 2.261 1.00 2.12 N ATOM 50 CZ ARG 5 17.921 -8.235 2.981 1.00 2.12 C ATOM 51 NH1 ARG 5 17.472 -9.236 3.725 1.00 2.12 N ATOM 54 NH2 ARG 5 19.224 -7.968 2.967 1.00 2.12 N ATOM 57 C ARG 5 15.521 -2.405 -0.739 1.00 2.12 C ATOM 58 O ARG 5 14.865 -1.855 0.157 1.00 2.12 O ATOM 59 N LYS 6 16.328 -1.725 -1.567 1.00 1.73 N ATOM 61 CA LYS 6 16.537 -0.262 -1.454 1.00 1.73 C ATOM 62 CB LYS 6 17.930 0.127 -1.955 1.00 1.73 C ATOM 63 CG LYS 6 18.995 0.124 -0.860 1.00 1.73 C ATOM 64 CD LYS 6 20.357 0.517 -1.411 1.00 1.73 C ATOM 65 CE LYS 6 21.415 0.513 -0.319 1.00 1.73 C ATOM 66 NZ LYS 6 22.755 0.896 -0.843 1.00 1.73 N ATOM 70 C LYS 6 15.521 0.815 -1.871 1.00 1.73 C ATOM 71 O LYS 6 15.245 1.721 -1.073 1.00 1.73 O ATOM 72 N LYS 7 14.979 0.729 -3.095 1.00 1.83 N ATOM 74 CA LYS 7 14.013 1.726 -3.602 1.00 1.83 C ATOM 75 CB LYS 7 13.926 1.690 -5.133 1.00 1.83 C ATOM 76 CG LYS 7 14.754 2.776 -5.819 1.00 1.83 C ATOM 77 CD LYS 7 14.631 2.693 -7.336 1.00 1.83 C ATOM 78 CE LYS 7 15.450 3.771 -8.042 1.00 1.83 C ATOM 79 NZ LYS 7 16.926 3.580 -7.914 1.00 1.83 N ATOM 83 C LYS 7 12.610 1.723 -2.983 1.00 1.83 C ATOM 84 O LYS 7 12.083 2.798 -2.650 1.00 1.83 O ATOM 85 N CYS 8 12.025 0.528 -2.814 1.00 1.83 N ATOM 87 CA CYS 8 10.673 0.369 -2.239 1.00 1.83 C ATOM 88 CB CYS 8 10.128 -1.032 -2.507 1.00 1.83 C ATOM 89 SG CYS 8 8.322 -1.150 -2.352 1.00 1.83 S ATOM 90 C CYS 8 10.504 0.721 -0.754 1.00 1.83 C ATOM 91 O CYS 8 9.478 1.309 -0.371 1.00 1.83 O ATOM 92 N THR 9 11.504 0.367 0.064 1.00 1.75 N ATOM 94 CA THR 9 11.497 0.640 1.518 1.00 1.75 C ATOM 95 CB THR 9 12.682 -0.083 2.237 1.00 1.75 C ATOM 96 OG1 THR 9 12.764 -1.437 1.773 1.00 1.75 O ATOM 98 CG2 THR 9 12.474 -0.104 3.760 1.00 1.75 C ATOM 99 C THR 9 11.543 2.155 1.806 1.00 1.75 C ATOM 100 O THR 9 10.914 2.632 2.767 1.00 1.75 O ATOM 101 N GLU 10 12.281 2.883 0.953 1.00 1.44 N ATOM 103 CA GLU 10 12.452 4.348 1.025 1.00 1.44 C ATOM 104 CB GLU 10 13.385 4.801 -0.107 1.00 1.44 C ATOM 105 CG GLU 10 14.111 6.117 0.124 1.00 1.44 C ATOM 106 CD GLU 10 15.013 6.501 -1.034 1.00 1.44 C ATOM 107 OE1 GLU 10 16.200 6.113 -1.019 1.00 1.44 O ATOM 108 OE2 GLU 10 14.536 7.195 -1.957 1.00 1.44 O ATOM 109 C GLU 10 11.070 4.980 0.843 1.00 1.44 C ATOM 110 O GLU 10 10.730 5.989 1.488 1.00 1.44 O ATOM 111 N MET 11 10.293 4.335 -0.033 1.00 1.23 N ATOM 113 CA MET 11 8.930 4.729 -0.371 1.00 1.23 C ATOM 114 CG MET 11 9.162 4.681 -2.886 1.00 1.23 C ATOM 115 SD MET 11 8.560 4.074 -4.476 1.00 1.23 S ATOM 116 CE MET 11 9.876 2.967 -4.954 1.00 1.23 C ATOM 117 C MET 11 7.928 4.508 0.764 1.00 1.23 C ATOM 118 O MET 11 7.121 5.398 1.052 1.00 1.23 O ATOM 119 CB MET 11 8.486 4.063 -1.671 1.00 1.23 C ATOM 120 N LYS 12 8.091 3.387 1.482 1.00 1.38 N ATOM 122 CA LYS 12 7.228 3.006 2.618 1.00 1.38 C ATOM 123 CB LYS 12 7.608 1.596 3.088 1.00 1.38 C ATOM 124 CG LYS 12 6.626 0.927 4.040 1.00 1.38 C ATOM 125 CD LYS 12 7.102 -0.459 4.439 1.00 1.38 C ATOM 126 CE LYS 12 6.122 -1.128 5.389 1.00 1.38 C ATOM 127 NZ LYS 12 6.575 -2.488 5.789 1.00 1.38 N ATOM 131 C LYS 12 7.384 4.007 3.785 1.00 1.38 C ATOM 132 O LYS 12 6.409 4.301 4.502 1.00 1.38 O ATOM 133 N LYS 13 8.611 4.525 3.933 1.00 1.31 N ATOM 135 CA LYS 13 8.991 5.484 4.984 1.00 1.31 C ATOM 136 CB LYS 13 10.526 5.613 4.995 1.00 1.31 C ATOM 137 CG LYS 13 11.128 6.298 6.208 1.00 1.31 C ATOM 138 CD LYS 13 12.648 6.367 6.108 1.00 1.31 C ATOM 139 CE LYS 13 13.274 7.054 7.320 1.00 1.31 C ATOM 140 NZ LYS 13 13.156 6.264 8.583 1.00 1.31 N ATOM 144 C LYS 13 8.334 6.872 4.823 1.00 1.31 C ATOM 145 O LYS 13 7.741 7.403 5.777 1.00 1.31 O ATOM 146 N LYS 14 8.465 7.429 3.615 1.00 1.49 N ATOM 148 CA LYS 14 7.923 8.739 3.228 1.00 1.49 C ATOM 149 CB LYS 14 8.623 9.241 1.965 1.00 1.49 C ATOM 150 CG LYS 14 10.078 9.621 2.174 1.00 1.49 C ATOM 151 CD LYS 14 10.714 10.112 0.882 1.00 1.49 C ATOM 152 CE LYS 14 12.170 10.493 1.093 1.00 1.49 C ATOM 153 NZ LYS 14 12.806 10.975 -0.164 1.00 1.49 N ATOM 157 C LYS 14 6.407 8.698 3.005 1.00 1.49 C ATOM 158 O LYS 14 5.692 9.681 3.265 1.00 1.49 O ATOM 159 N PHE 15 5.957 7.529 2.537 1.00 1.51 N ATOM 161 CA PHE 15 4.560 7.209 2.207 1.00 1.51 C ATOM 162 CB PHE 15 4.484 6.144 1.097 1.00 1.51 C ATOM 163 CG PHE 15 4.505 6.707 -0.314 1.00 1.51 C ATOM 164 CD1 PHE 15 5.683 7.265 -0.871 1.00 1.51 C ATOM 165 CD2 PHE 15 3.343 6.656 -1.116 1.00 1.51 C ATOM 166 CE1 PHE 15 5.704 7.765 -2.199 1.00 1.51 C ATOM 167 CE2 PHE 15 3.350 7.153 -2.447 1.00 1.51 C ATOM 168 CZ PHE 15 4.532 7.709 -2.988 1.00 1.51 C ATOM 169 C PHE 15 3.574 6.890 3.334 1.00 1.51 C ATOM 170 O PHE 15 2.346 6.964 3.127 1.00 1.51 O ATOM 171 N LYS 16 4.114 6.637 4.535 1.00 1.95 N ATOM 173 CA LYS 16 3.337 6.253 5.734 1.00 1.95 C ATOM 174 CB LYS 16 4.276 6.141 6.940 1.00 1.95 C ATOM 175 CG LYS 16 3.727 5.333 8.119 1.00 1.95 C ATOM 176 CD LYS 16 4.728 5.278 9.267 1.00 1.95 C ATOM 177 CE LYS 16 4.201 4.476 10.455 1.00 1.95 C ATOM 178 NZ LYS 16 4.076 3.012 10.180 1.00 1.95 N ATOM 182 C LYS 16 2.177 7.212 6.074 1.00 1.95 C ATOM 183 O LYS 16 1.230 6.830 6.779 1.00 1.95 O ATOM 184 N ASN 17 2.244 8.424 5.519 1.00 1.80 N ATOM 186 CA ASN 17 1.225 9.461 5.703 1.00 1.80 C ATOM 187 CB ASN 17 1.777 10.815 5.253 1.00 1.80 C ATOM 188 CG ASN 17 2.871 11.335 6.174 1.00 1.80 C ATOM 189 OD1 ASN 17 4.056 11.069 5.962 1.00 1.80 O ATOM 190 ND2 ASN 17 2.480 12.100 7.190 1.00 1.80 N ATOM 193 C ASN 17 -0.032 9.117 4.909 1.00 1.80 C ATOM 194 O ASN 17 -1.115 9.666 5.151 1.00 1.80 O ATOM 195 N CYS 18 0.143 8.165 3.989 1.00 2.01 N ATOM 197 CA CYS 18 -0.896 7.691 3.094 1.00 2.01 C ATOM 198 CB CYS 18 -0.444 7.784 1.657 1.00 2.01 C ATOM 199 SG CYS 18 -0.498 9.512 1.275 1.00 2.01 S ATOM 200 C CYS 18 -1.789 6.496 3.342 1.00 2.01 C ATOM 201 O CYS 18 -1.501 5.592 4.135 1.00 2.01 O ATOM 202 N GLU 19 -2.956 6.620 2.726 1.00 3.10 N ATOM 204 CA GLU 19 -4.053 5.675 2.769 1.00 3.10 C ATOM 205 CB GLU 19 -5.366 6.454 2.627 1.00 3.10 C ATOM 206 CG GLU 19 -5.241 7.765 1.825 1.00 3.10 C ATOM 207 CD GLU 19 -6.559 8.505 1.707 1.00 3.10 C ATOM 208 OE1 GLU 19 -6.853 9.343 2.586 1.00 3.10 O ATOM 209 OE2 GLU 19 -7.300 8.253 0.734 1.00 3.10 O ATOM 210 C GLU 19 -3.949 4.554 1.728 1.00 3.10 C ATOM 211 O GLU 19 -4.262 4.755 0.545 1.00 3.10 O ATOM 212 N VAL 20 -3.448 3.398 2.176 1.00 3.91 N ATOM 214 CA VAL 20 -3.286 2.217 1.320 1.00 3.91 C ATOM 215 CB VAL 20 -1.981 1.395 1.618 1.00 3.91 C ATOM 216 CG1 VAL 20 -1.488 0.736 0.328 1.00 3.91 C ATOM 217 CG2 VAL 20 -0.880 2.284 2.202 1.00 3.91 C ATOM 218 C VAL 20 -4.518 1.308 1.380 1.00 3.91 C ATOM 219 O VAL 20 -4.806 0.681 2.414 1.00 3.91 O ATOM 220 N ARG 21 -5.276 1.325 0.280 1.00 4.66 N ATOM 222 CA ARG 21 -6.470 0.498 0.134 1.00 4.66 C ATOM 223 CB ARG 21 -7.708 1.342 -0.200 1.00 4.66 C ATOM 224 CG ARG 21 -8.394 1.919 1.015 1.00 4.66 C ATOM 225 CD ARG 21 -9.612 2.744 0.627 1.00 4.66 C ATOM 226 NE ARG 21 -10.289 3.312 1.795 1.00 4.66 N ATOM 228 CZ ARG 21 -11.381 4.076 1.754 1.00 4.66 C ATOM 229 NH1 ARG 21 -11.902 4.532 2.884 1.00 4.66 N ATOM 232 NH2 ARG 21 -11.959 4.392 0.598 1.00 4.66 N ATOM 235 C ARG 21 -6.215 -0.576 -0.924 1.00 4.66 C ATOM 236 O ARG 21 -6.395 -0.350 -2.131 1.00 4.66 O ATOM 237 N CYS 22 -5.728 -1.724 -0.441 1.00 4.92 N ATOM 239 CA CYS 22 -5.431 -2.894 -1.266 1.00 4.92 C ATOM 240 CB CYS 22 -4.061 -3.499 -0.913 1.00 4.92 C ATOM 241 SG CYS 22 -3.866 -3.975 0.826 1.00 4.92 S ATOM 242 C CYS 22 -6.531 -3.919 -1.026 1.00 4.92 C ATOM 243 O CYS 22 -6.613 -4.504 0.067 1.00 4.92 O ATOM 244 N ASP 23 -7.432 -4.065 -2.004 1.00 5.93 N ATOM 246 CA ASP 23 -8.508 -5.055 -1.902 1.00 5.93 C ATOM 247 CB ASP 23 -9.559 -4.891 -3.010 1.00 5.93 C ATOM 248 CG ASP 23 -10.679 -3.926 -2.622 1.00 5.93 C ATOM 249 OD1 ASP 23 -10.548 -2.713 -2.900 1.00 5.93 O ATOM 250 OD2 ASP 23 -11.697 -4.383 -2.056 1.00 5.93 O ATOM 251 C ASP 23 -7.816 -6.424 -1.933 1.00 5.93 C ATOM 252 O ASP 23 -7.058 -6.734 -2.864 1.00 5.93 O ATOM 253 N GLU 24 -8.057 -7.200 -0.873 1.00 6.24 N ATOM 255 CA GLU 24 -7.453 -8.521 -0.615 1.00 6.24 C ATOM 256 CB GLU 24 -7.871 -9.017 0.793 1.00 6.24 C ATOM 257 CG GLU 24 -9.353 -8.809 1.217 1.00 6.24 C ATOM 258 CD GLU 24 -10.220 -10.049 1.026 1.00 6.24 C ATOM 259 OE1 GLU 24 -10.810 -10.202 -0.064 1.00 6.24 O ATOM 260 OE2 GLU 24 -10.307 -10.867 1.967 1.00 6.24 O ATOM 261 C GLU 24 -7.562 -9.651 -1.672 1.00 6.24 C ATOM 262 O GLU 24 -7.089 -10.773 -1.439 1.00 6.24 O ATOM 263 N SER 25 -8.124 -9.317 -2.840 1.00 5.77 N ATOM 265 CA SER 25 -8.275 -10.233 -3.985 1.00 5.77 C ATOM 266 CB SER 25 -9.591 -9.958 -4.725 1.00 5.77 C ATOM 267 OG SER 25 -10.703 -10.217 -3.883 1.00 5.77 O ATOM 269 C SER 25 -7.038 -10.132 -4.916 1.00 5.77 C ATOM 270 O SER 25 -7.103 -10.409 -6.123 1.00 5.77 O ATOM 271 N ASN 26 -5.908 -9.763 -4.290 1.00 6.14 N ATOM 273 CA ASN 26 -4.554 -9.571 -4.866 1.00 6.14 C ATOM 274 CB ASN 26 -3.789 -10.904 -4.939 1.00 6.14 C ATOM 275 CG ASN 26 -3.378 -11.417 -3.569 1.00 6.14 C ATOM 276 OD1 ASN 26 -2.287 -11.112 -3.079 1.00 6.14 O ATOM 277 ND2 ASN 26 -4.241 -12.218 -2.950 1.00 6.14 N ATOM 280 C ASN 26 -4.296 -8.725 -6.126 1.00 6.14 C ATOM 281 O ASN 26 -3.126 -8.505 -6.484 1.00 6.14 O ATOM 282 N HIS 27 -5.357 -8.228 -6.780 1.00 4.74 N ATOM 284 CA HIS 27 -5.202 -7.337 -7.948 1.00 4.74 C ATOM 285 CG HIS 27 -7.688 -6.661 -8.023 1.00 4.74 C ATOM 286 CD2 HIS 27 -8.371 -5.498 -8.159 1.00 4.74 C ATOM 287 ND1 HIS 27 -8.308 -7.349 -7.002 1.00 4.74 N ATOM 289 CE1 HIS 27 -9.320 -6.637 -6.540 1.00 4.74 C ATOM 290 NE2 HIS 27 -9.380 -5.509 -7.225 1.00 4.74 N ATOM 292 C HIS 27 -4.819 -6.022 -7.268 1.00 4.74 C ATOM 293 O HIS 27 -5.405 -5.690 -6.238 1.00 4.74 O ATOM 294 CB HIS 27 -6.506 -7.209 -8.776 1.00 4.74 C ATOM 295 N CYS 28 -3.879 -5.261 -7.820 1.00 4.34 N ATOM 297 CA CYS 28 -3.477 -4.045 -7.126 1.00 4.34 C ATOM 298 CB CYS 28 -1.966 -3.864 -7.133 1.00 4.34 C ATOM 299 SG CYS 28 -1.205 -4.839 -5.832 1.00 4.34 S ATOM 300 C CYS 28 -4.193 -2.759 -7.465 1.00 4.34 C ATOM 301 O CYS 28 -4.364 -2.391 -8.627 1.00 4.34 O ATOM 302 N VAL 29 -4.647 -2.119 -6.388 1.00 3.71 N ATOM 304 CA VAL 29 -5.383 -0.861 -6.414 1.00 3.71 C ATOM 305 CB VAL 29 -6.607 -0.876 -5.431 1.00 3.71 C ATOM 306 CG1 VAL 29 -7.515 0.332 -5.663 1.00 3.71 C ATOM 307 CG2 VAL 29 -7.418 -2.163 -5.592 1.00 3.71 C ATOM 308 C VAL 29 -4.387 0.218 -5.992 1.00 3.71 C ATOM 309 O VAL 29 -3.249 -0.074 -5.604 1.00 3.71 O ATOM 310 N GLU 30 -4.814 1.459 -6.189 1.00 2.95 N ATOM 312 CA GLU 30 -4.050 2.652 -5.863 1.00 2.95 C ATOM 313 CB GLU 30 -4.450 3.780 -6.822 1.00 2.95 C ATOM 314 CG GLU 30 -5.958 3.945 -7.040 1.00 2.95 C ATOM 315 CD GLU 30 -6.291 5.075 -7.996 1.00 2.95 C ATOM 316 OE1 GLU 30 -6.377 4.819 -9.216 1.00 2.95 O ATOM 317 OE2 GLU 30 -6.470 6.219 -7.528 1.00 2.95 O ATOM 318 C GLU 30 -4.191 3.099 -4.399 1.00 2.95 C ATOM 319 O GLU 30 -5.237 2.906 -3.770 1.00 2.95 O ATOM 320 N VAL 31 -3.107 3.685 -3.891 1.00 2.20 N ATOM 322 CA VAL 31 -2.984 4.251 -2.544 1.00 2.20 C ATOM 323 CB VAL 31 -1.594 3.847 -1.843 1.00 2.20 C ATOM 324 CG1 VAL 31 -0.404 3.997 -2.781 1.00 2.20 C ATOM 325 CG2 VAL 31 -1.323 4.676 -0.578 1.00 2.20 C ATOM 326 C VAL 31 -3.053 5.756 -2.838 1.00 2.20 C ATOM 327 O VAL 31 -2.451 6.224 -3.820 1.00 2.20 O ATOM 328 N ARG 32 -3.773 6.504 -2.000 1.00 2.61 N ATOM 330 CA ARG 32 -3.886 7.939 -2.221 1.00 2.61 C ATOM 331 CB ARG 32 -5.290 8.431 -1.899 1.00 2.61 C ATOM 332 CG ARG 32 -5.760 9.507 -2.855 1.00 2.61 C ATOM 333 CD ARG 32 -7.172 10.001 -2.529 1.00 2.61 C ATOM 334 NE ARG 32 -7.233 10.775 -1.286 1.00 2.61 N ATOM 336 CZ ARG 32 -8.337 11.319 -0.773 1.00 2.61 C ATOM 337 NH1 ARG 32 -9.514 11.191 -1.380 1.00 2.61 N ATOM 340 NH2 ARG 32 -8.264 11.999 0.363 1.00 2.61 N ATOM 343 C ARG 32 -2.830 8.664 -1.393 1.00 2.61 C ATOM 344 O ARG 32 -2.878 8.688 -0.158 1.00 2.61 O ATOM 345 N CYS 33 -1.871 9.235 -2.122 1.00 3.27 N ATOM 347 CA CYS 33 -0.747 9.971 -1.557 1.00 3.27 C ATOM 348 CB CYS 33 0.597 9.382 -2.000 1.00 3.27 C ATOM 349 SG CYS 33 1.985 9.888 -0.964 1.00 3.27 S ATOM 350 C CYS 33 -0.826 11.436 -1.939 1.00 3.27 C ATOM 351 O CYS 33 -1.411 11.788 -2.969 1.00 3.27 O ATOM 352 N SER 34 -0.219 12.276 -1.101 1.00 3.96 N ATOM 354 CA SER 34 -0.196 13.721 -1.290 1.00 3.96 C ATOM 355 CB SER 34 -0.031 14.395 0.071 1.00 3.96 C ATOM 356 OG SER 34 1.187 14.008 0.677 1.00 3.96 O ATOM 358 C SER 34 0.914 14.188 -2.246 1.00 3.96 C ATOM 359 O SER 34 0.863 15.320 -2.732 1.00 3.96 O ATOM 360 N ASP 35 1.867 13.297 -2.552 1.00 4.37 N ATOM 362 CA ASP 35 3.000 13.640 -3.424 1.00 4.37 C ATOM 363 CB ASP 35 4.328 13.382 -2.682 1.00 4.37 C ATOM 364 CG ASP 35 5.438 14.338 -3.094 1.00 4.37 C ATOM 365 OD1 ASP 35 5.572 15.409 -2.462 1.00 4.37 O ATOM 366 OD2 ASP 35 6.191 14.015 -4.038 1.00 4.37 O ATOM 367 C ASP 35 3.055 13.041 -4.845 1.00 4.37 C ATOM 368 O ASP 35 2.773 13.753 -5.815 1.00 4.37 O ATOM 369 N THR 36 3.370 11.741 -4.954 1.00 4.13 N ATOM 371 CA THR 36 3.546 11.043 -6.247 1.00 4.13 C ATOM 372 CB THR 36 4.997 10.471 -6.363 1.00 4.13 C ATOM 373 OG1 THR 36 5.161 9.361 -5.470 1.00 4.13 O ATOM 375 CG2 THR 36 6.013 11.526 -5.991 1.00 4.13 C ATOM 376 C THR 36 2.540 9.906 -6.497 1.00 4.13 C ATOM 377 O THR 36 1.833 9.525 -5.581 1.00 4.13 O ATOM 378 N LYS 37 2.453 9.401 -7.739 1.00 3.90 N ATOM 380 CA LYS 37 1.536 8.302 -8.100 1.00 3.90 C ATOM 381 CB LYS 37 0.431 8.793 -9.048 1.00 3.90 C ATOM 382 CG LYS 37 -0.673 9.582 -8.378 1.00 3.90 C ATOM 383 CD LYS 37 -1.722 10.029 -9.385 1.00 3.90 C ATOM 384 CE LYS 37 -2.832 10.821 -8.711 1.00 3.90 C ATOM 385 NZ LYS 37 -3.866 11.266 -9.684 1.00 3.90 N ATOM 389 C LYS 37 2.167 7.015 -8.670 1.00 3.90 C ATOM 390 O LYS 37 2.378 6.909 -9.880 1.00 3.90 O ATOM 391 N TYR 38 2.511 6.062 -7.795 1.00 3.21 N ATOM 393 CA TYR 38 3.095 4.769 -8.203 1.00 3.21 C ATOM 394 CB TYR 38 4.594 4.711 -7.811 1.00 3.21 C ATOM 395 CG TYR 38 4.912 4.161 -6.427 1.00 3.21 C ATOM 396 CD1 TYR 38 5.431 2.849 -6.274 1.00 3.21 C ATOM 397 CE1 TYR 38 5.716 2.310 -4.990 1.00 3.21 C ATOM 398 CD2 TYR 38 4.694 4.925 -5.251 1.00 3.21 C ATOM 399 CE2 TYR 38 4.978 4.387 -3.962 1.00 3.21 C ATOM 400 CZ TYR 38 5.485 3.085 -3.844 1.00 3.21 C ATOM 401 OH TYR 38 5.754 2.567 -2.597 1.00 3.21 O ATOM 403 C TYR 38 2.319 3.613 -7.543 1.00 3.21 C ATOM 404 O TYR 38 1.498 3.848 -6.663 1.00 3.21 O ATOM 405 N THR 39 2.579 2.378 -7.982 1.00 1.93 N ATOM 407 CA THR 39 1.965 1.163 -7.413 1.00 1.93 C ATOM 408 CB THR 39 0.874 0.524 -8.382 1.00 1.93 C ATOM 409 OG1 THR 39 0.683 -0.865 -8.077 1.00 1.93 O ATOM 411 CG2 THR 39 1.230 0.708 -9.856 1.00 1.93 C ATOM 412 C THR 39 3.078 0.166 -7.033 1.00 1.93 C ATOM 413 O THR 39 4.053 0.045 -7.776 1.00 1.93 O ATOM 414 N LEU 40 2.932 -0.537 -5.900 1.00 3.51 N ATOM 416 CA LEU 40 3.937 -1.514 -5.431 1.00 3.51 C ATOM 417 CB LEU 40 4.178 -1.377 -3.909 1.00 3.51 C ATOM 418 CG LEU 40 3.236 -1.720 -2.741 1.00 3.51 C ATOM 419 CD1 LEU 40 4.074 -2.064 -1.521 1.00 3.51 C ATOM 420 CD2 LEU 40 2.254 -0.582 -2.416 1.00 3.51 C ATOM 421 C LEU 40 3.643 -2.973 -5.817 1.00 3.51 C ATOM 422 O LEU 40 2.599 -3.260 -6.405 1.00 3.51 O ATOM 423 N CYS 41 4.573 -3.868 -5.455 1.00 4.94 N ATOM 425 CA CYS 41 4.498 -5.308 -5.720 1.00 4.94 C ATOM 426 CB CYS 41 5.792 -5.752 -6.410 1.00 4.94 C ATOM 427 SG CYS 41 6.185 -4.745 -7.859 1.00 4.94 S ATOM 428 C CYS 41 4.268 -6.083 -4.418 1.00 4.94 C ATOM 429 O CYS 41 4.269 -5.425 -3.355 1.00 4.94 O ATOM 430 OXT CYS 41 4.043 -7.313 -4.473 1.00 4.94 O TER END