####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 44 ( 344), selected 44 , name T0953s2TS110_1-D1 # Molecule2: number of CA atoms 44 ( 344), selected 44 , name T0953s2-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS110_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 12 - 36 4.99 10.63 LCS_AVERAGE: 52.32 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 20 - 31 1.85 10.89 LCS_AVERAGE: 21.07 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 8 - 16 0.80 13.85 LONGEST_CONTINUOUS_SEGMENT: 9 23 - 31 0.67 11.78 LCS_AVERAGE: 14.05 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 44 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 2 A 2 3 3 19 3 3 3 3 3 4 6 9 16 18 20 22 24 26 28 28 30 31 32 34 LCS_GDT V 3 V 3 3 7 19 3 3 4 4 6 8 9 9 11 15 16 16 17 18 19 19 19 27 32 33 LCS_GDT Q 4 Q 4 3 7 21 3 3 4 6 7 8 9 9 12 15 16 19 23 25 26 29 34 34 35 36 LCS_GDT G 5 G 5 4 7 23 2 4 4 6 7 9 11 13 14 18 22 23 24 27 29 32 34 34 35 36 LCS_GDT P 6 P 6 4 7 23 3 4 5 8 10 10 12 14 16 18 22 23 24 27 29 32 34 34 35 36 LCS_GDT W 7 W 7 4 11 23 3 4 4 7 9 11 12 14 16 18 22 23 24 27 29 32 34 34 35 36 LCS_GDT V 8 V 8 9 11 24 3 7 9 9 10 10 12 13 15 18 22 23 24 26 29 32 34 34 35 36 LCS_GDT G 9 G 9 9 11 24 3 7 9 9 10 10 12 14 16 18 22 23 24 27 29 32 34 34 35 36 LCS_GDT S 10 S 10 9 11 24 4 7 9 9 10 10 15 15 16 18 22 23 24 27 29 32 34 34 35 36 LCS_GDT S 11 S 11 9 11 24 4 7 9 9 10 10 12 14 16 18 22 23 24 27 29 32 34 34 35 36 LCS_GDT Y 12 Y 12 9 11 25 4 7 9 9 10 10 15 15 17 18 22 23 24 27 29 32 34 34 35 36 LCS_GDT V 13 V 13 9 11 25 4 7 9 9 10 10 13 14 17 18 22 23 24 27 29 32 34 34 35 36 LCS_GDT A 14 A 14 9 11 25 3 7 9 9 10 12 12 14 17 18 22 23 24 27 29 32 34 34 35 36 LCS_GDT E 15 E 15 9 11 25 3 5 9 9 10 10 12 14 17 18 22 23 24 27 29 32 34 34 35 36 LCS_GDT T 16 T 16 9 11 25 3 7 9 9 10 10 12 14 15 17 22 22 24 27 29 32 34 34 35 36 LCS_GDT G 17 G 17 4 11 25 3 4 5 8 10 10 12 14 16 18 22 23 24 27 29 32 34 34 35 36 LCS_GDT Q 18 Q 18 4 5 25 3 4 4 5 6 9 11 13 17 18 22 23 24 27 29 32 34 34 35 36 LCS_GDT N 19 N 19 4 4 25 3 4 10 10 10 12 15 15 17 18 20 22 24 26 29 32 34 34 35 36 LCS_GDT W 20 W 20 4 12 25 3 3 4 8 11 12 15 15 15 17 20 21 23 25 27 31 34 34 35 36 LCS_GDT A 21 A 21 4 12 25 3 4 5 9 11 12 15 15 17 18 20 23 24 27 29 32 34 34 35 36 LCS_GDT S 22 S 22 4 12 25 3 4 5 9 11 12 15 15 17 18 20 23 24 27 29 32 34 34 35 36 LCS_GDT L 23 L 23 9 12 25 3 8 10 10 11 12 15 15 17 18 20 23 24 27 29 32 34 34 35 36 LCS_GDT A 24 A 24 9 12 25 7 8 10 10 11 12 15 15 17 18 22 23 24 27 29 32 34 34 35 36 LCS_GDT A 25 A 25 9 12 25 7 8 10 10 11 12 15 15 17 18 22 23 24 27 29 32 34 34 35 36 LCS_GDT N 26 N 26 9 12 25 7 8 10 10 11 12 15 15 17 18 22 23 24 27 29 32 34 34 35 36 LCS_GDT E 27 E 27 9 12 25 7 8 10 10 11 12 15 15 17 18 22 23 24 27 29 32 34 34 35 36 LCS_GDT L 28 L 28 9 12 25 7 8 10 10 11 12 15 15 17 18 22 22 24 26 28 32 34 34 35 36 LCS_GDT R 29 R 29 9 12 25 7 8 10 10 11 12 15 15 17 18 22 23 24 26 28 32 34 34 35 36 LCS_GDT V 30 V 30 9 12 25 7 8 10 10 11 12 15 15 17 18 22 23 24 26 29 32 34 34 35 36 LCS_GDT T 31 T 31 9 12 25 4 8 10 10 11 12 15 15 17 18 22 23 24 27 29 32 34 34 35 36 LCS_GDT E 32 E 32 4 7 25 4 4 4 7 9 10 12 14 16 18 20 22 24 27 29 32 34 34 35 36 LCS_GDT R 33 R 33 4 7 25 4 4 4 6 6 7 12 13 14 18 20 22 24 27 29 32 34 34 35 36 LCS_GDT P 34 P 34 4 7 25 3 4 4 6 6 7 8 13 14 18 20 22 24 27 29 32 34 34 35 36 LCS_GDT F 35 F 35 4 7 25 3 3 4 6 6 7 9 12 14 15 18 22 24 27 29 32 34 34 35 36 LCS_GDT W 36 W 36 4 7 25 3 4 4 5 6 9 9 12 14 16 19 22 24 27 29 32 34 34 35 36 LCS_GDT I 37 I 37 6 8 20 3 4 6 7 7 8 9 10 13 15 17 21 24 27 29 32 34 34 35 36 LCS_GDT S 38 S 38 6 8 20 3 5 6 7 7 8 9 9 13 15 16 19 22 26 28 28 31 34 35 36 LCS_GDT S 39 S 39 6 8 20 3 5 6 7 7 8 9 10 13 15 16 19 24 26 28 28 33 34 35 36 LCS_GDT F 40 F 40 6 8 20 3 5 6 7 7 8 9 9 10 12 16 17 19 21 23 26 29 30 31 32 LCS_GDT I 41 I 41 6 8 20 3 5 6 7 7 8 9 9 10 12 13 15 19 19 21 25 27 30 31 31 LCS_GDT G 42 G 42 6 8 16 3 3 6 7 7 8 9 9 9 10 11 14 14 17 19 21 25 27 28 28 LCS_GDT R 43 R 43 3 8 16 3 5 6 7 7 8 9 9 10 12 13 14 14 17 18 20 21 24 27 28 LCS_GDT S 44 S 44 3 8 16 3 3 3 5 7 8 9 9 10 12 13 14 14 17 17 19 21 22 23 28 LCS_GDT K 45 K 45 3 4 16 3 3 3 4 5 8 9 9 10 12 13 14 14 16 16 16 18 20 20 21 LCS_AVERAGE LCS_A: 29.15 ( 14.05 21.07 52.32 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 8 10 10 11 12 15 15 17 18 22 23 24 27 29 32 34 34 35 36 GDT PERCENT_AT 15.91 18.18 22.73 22.73 25.00 27.27 34.09 34.09 38.64 40.91 50.00 52.27 54.55 61.36 65.91 72.73 77.27 77.27 79.55 81.82 GDT RMS_LOCAL 0.26 0.48 0.81 0.81 1.67 1.85 2.42 2.42 3.20 3.35 4.11 4.56 4.38 5.03 5.23 5.65 5.98 5.98 6.14 6.32 GDT RMS_ALL_AT 11.91 11.74 11.83 11.83 10.87 10.89 10.64 10.64 11.10 11.13 11.41 11.15 12.48 11.48 11.47 11.10 10.96 10.96 10.76 10.69 # Checking swapping # possible swapping detected: E 27 E 27 # possible swapping detected: E 32 E 32 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA A 2 A 2 7.554 0 0.110 0.120 9.017 0.000 0.000 - LGA V 3 V 3 9.948 0 0.752 1.004 13.876 0.000 0.000 10.859 LGA Q 4 Q 4 9.874 0 0.699 1.005 11.123 0.000 0.000 9.102 LGA G 5 G 5 11.066 0 0.619 0.619 11.954 0.000 0.000 - LGA P 6 P 6 14.463 0 0.267 0.250 16.160 0.000 0.000 12.925 LGA W 7 W 7 11.736 0 0.095 0.178 21.460 0.000 0.000 21.460 LGA V 8 V 8 10.861 0 0.519 1.355 14.760 0.000 0.000 14.760 LGA G 9 G 9 7.533 0 0.173 0.173 8.655 0.455 0.455 - LGA S 10 S 10 3.435 0 0.090 0.605 4.834 12.273 12.121 4.179 LGA S 11 S 11 5.615 0 0.068 0.674 9.563 0.909 0.606 9.563 LGA Y 12 Y 12 3.342 0 0.047 1.121 8.759 11.364 4.242 8.759 LGA V 13 V 13 6.152 0 0.088 0.091 9.499 1.364 0.779 9.499 LGA A 14 A 14 8.726 0 0.301 0.295 10.788 0.000 0.000 - LGA E 15 E 15 8.038 0 0.138 1.192 9.530 0.000 0.000 8.877 LGA T 16 T 16 9.743 0 0.104 0.115 12.203 0.000 0.000 9.816 LGA G 17 G 17 11.890 0 0.725 0.725 11.890 0.000 0.000 - LGA Q 18 Q 18 8.650 0 0.461 1.461 12.443 0.000 0.000 11.229 LGA N 19 N 19 3.388 0 0.071 0.974 6.793 25.909 15.227 6.764 LGA W 20 W 20 3.478 0 0.614 0.439 11.996 34.545 9.870 11.996 LGA A 21 A 21 1.933 0 0.210 0.266 3.158 59.091 50.909 - LGA S 22 S 22 1.435 0 0.133 0.176 2.155 65.909 58.788 1.717 LGA L 23 L 23 1.377 0 0.379 0.353 2.615 53.182 60.000 0.667 LGA A 24 A 24 2.518 0 0.176 0.167 2.816 32.727 31.636 - LGA A 25 A 25 2.515 0 0.102 0.094 2.874 39.091 36.727 - LGA N 26 N 26 1.023 0 0.064 0.850 4.738 73.636 47.727 4.516 LGA E 27 E 27 1.616 0 0.046 1.222 6.111 51.364 33.535 6.111 LGA L 28 L 28 2.150 0 0.126 0.131 4.068 51.364 31.818 4.068 LGA R 29 R 29 0.902 0 0.322 1.535 4.419 77.727 53.388 2.342 LGA V 30 V 30 1.685 0 0.555 0.560 4.230 40.000 39.481 2.593 LGA T 31 T 31 2.999 0 0.101 0.110 6.595 13.636 12.987 5.838 LGA E 32 E 32 10.344 0 0.323 1.353 13.351 0.000 0.000 12.056 LGA R 33 R 33 14.806 0 0.524 1.282 17.445 0.000 0.000 11.094 LGA P 34 P 34 17.328 0 0.068 0.085 20.109 0.000 0.000 20.109 LGA F 35 F 35 14.569 0 0.143 1.229 20.448 0.000 0.000 20.448 LGA W 36 W 36 13.318 0 0.094 1.111 14.070 0.000 0.000 13.834 LGA I 37 I 37 13.986 0 0.639 1.333 15.237 0.000 0.000 12.780 LGA S 38 S 38 16.667 0 0.133 0.156 18.388 0.000 0.000 18.388 LGA S 39 S 39 14.447 0 0.131 0.162 14.986 0.000 0.000 13.873 LGA F 40 F 40 13.622 0 0.037 0.071 15.588 0.000 0.000 15.588 LGA I 41 I 41 16.176 0 0.576 1.064 21.140 0.000 0.000 21.140 LGA G 42 G 42 16.786 0 0.206 0.206 16.884 0.000 0.000 - LGA R 43 R 43 15.803 0 0.680 1.105 19.185 0.000 0.000 15.610 LGA S 44 S 44 17.738 0 0.084 0.707 18.638 0.000 0.000 17.695 LGA K 45 K 45 22.044 0 0.614 0.753 32.610 0.000 0.000 32.610 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 44 176 176 100.00 344 344 100.00 44 35 SUMMARY(RMSD_GDC): 9.767 9.723 10.610 14.649 11.370 6.026 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 44 44 4.0 15 2.42 36.932 32.571 0.595 LGA_LOCAL RMSD: 2.420 Number of atoms: 15 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.643 Number of assigned atoms: 44 Std_ASGN_ATOMS RMSD: 9.767 Standard rmsd on all 44 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.361238 * X + 0.101674 * Y + -0.926914 * Z + 8.671141 Y_new = -0.506015 * X + -0.813571 * Y + -0.286446 * Z + 40.691406 Z_new = -0.783234 * X + 0.572508 * Y + -0.242444 * Z + 38.627296 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.950811 0.899851 1.971376 [DEG: -54.4775 51.5577 112.9515 ] ZXZ: -1.271074 1.815680 -0.939597 [DEG: -72.8272 104.0308 -53.8349 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0953s2TS110_1-D1 REMARK 2: T0953s2-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS110_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 44 44 4.0 15 2.42 32.571 9.77 REMARK ---------------------------------------------------------- MOLECULE T0953s2TS110_1-D1 PFRMAT TS TARGET T0953s2 MODEL 1 PARENT N/A ATOM 12 N ALA 2 12.076 34.434 7.709 1.00 0.00 N ATOM 13 CA ALA 2 12.954 34.313 6.522 1.00 0.00 C ATOM 14 C ALA 2 13.789 35.524 6.087 1.00 0.00 C ATOM 15 O ALA 2 13.688 36.616 6.686 1.00 0.00 O ATOM 17 CB ALA 2 12.141 33.912 5.300 1.00 0.00 C ATOM 18 N VAL 3 14.601 35.359 5.024 1.00 0.00 N ATOM 19 CA VAL 3 14.899 34.644 3.298 1.00 0.00 C ATOM 20 C VAL 3 15.773 33.411 3.108 1.00 0.00 C ATOM 21 O VAL 3 15.689 32.766 2.055 1.00 0.00 O ATOM 23 CB VAL 3 15.510 35.693 2.350 1.00 0.00 C ATOM 24 CG1 VAL 3 14.586 36.893 2.216 1.00 0.00 C ATOM 25 CG2 VAL 3 16.882 36.125 2.847 1.00 0.00 C ATOM 26 N GLN 4 16.557 32.994 4.079 1.00 0.00 N ATOM 27 CA GLN 4 17.368 31.835 4.008 1.00 0.00 C ATOM 28 C GLN 4 16.745 30.545 4.558 1.00 0.00 C ATOM 29 O GLN 4 17.207 29.449 4.252 1.00 0.00 O ATOM 31 CB GLN 4 18.688 32.058 4.749 1.00 0.00 C ATOM 32 CD GLN 4 19.935 32.936 2.735 1.00 0.00 C ATOM 33 CG GLN 4 19.537 33.182 4.178 1.00 0.00 C ATOM 34 OE1 GLN 4 20.605 31.951 2.425 1.00 0.00 O ATOM 37 NE2 GLN 4 19.522 33.834 1.849 1.00 0.00 N ATOM 38 N GLY 5 15.693 30.682 5.362 1.00 0.00 N ATOM 39 CA GLY 5 14.933 29.477 5.866 1.00 0.00 C ATOM 40 C GLY 5 15.373 28.899 7.210 1.00 0.00 C ATOM 41 O GLY 5 15.275 27.696 7.448 1.00 0.00 O ATOM 43 N PRO 6 15.847 29.771 8.094 1.00 0.00 N ATOM 44 CA PRO 6 16.763 29.445 9.256 1.00 0.00 C ATOM 45 C PRO 6 15.534 28.730 9.805 1.00 0.00 C ATOM 46 O PRO 6 15.666 27.737 10.524 1.00 0.00 O ATOM 47 CB PRO 6 17.177 30.814 9.797 1.00 0.00 C ATOM 48 CD PRO 6 15.639 31.208 8.006 1.00 0.00 C ATOM 49 CG PRO 6 16.102 31.740 9.333 1.00 0.00 C ATOM 50 N TRP 7 14.342 29.238 9.481 1.00 0.00 N ATOM 51 CA TRP 7 13.186 28.776 10.225 1.00 0.00 C ATOM 52 C TRP 7 12.091 28.531 9.217 1.00 0.00 C ATOM 53 O TRP 7 11.157 29.321 9.097 1.00 0.00 O ATOM 55 CB TRP 7 12.784 29.805 11.284 1.00 0.00 C ATOM 58 CG TRP 7 13.865 30.091 12.281 1.00 0.00 C ATOM 59 CD1 TRP 7 14.581 31.247 12.404 1.00 0.00 C ATOM 61 NE1 TRP 7 15.485 31.138 13.434 1.00 0.00 N ATOM 62 CD2 TRP 7 14.351 29.206 13.297 1.00 0.00 C ATOM 63 CE2 TRP 7 15.361 29.891 13.997 1.00 0.00 C ATOM 64 CH2 TRP 7 15.722 28.040 15.417 1.00 0.00 C ATOM 65 CZ2 TRP 7 16.055 29.317 15.061 1.00 0.00 C ATOM 66 CE3 TRP 7 14.032 27.902 13.684 1.00 0.00 C ATOM 67 CZ3 TRP 7 14.722 27.335 14.739 1.00 0.00 C ATOM 68 N VAL 8 12.239 27.443 8.470 1.00 0.00 N ATOM 69 CA VAL 8 11.175 27.113 7.374 1.00 0.00 C ATOM 70 C VAL 8 10.268 28.226 6.866 1.00 0.00 C ATOM 71 O VAL 8 9.113 28.327 7.284 1.00 0.00 O ATOM 73 CB VAL 8 10.222 25.992 7.831 1.00 0.00 C ATOM 74 CG1 VAL 8 10.996 24.705 8.078 1.00 0.00 C ATOM 75 CG2 VAL 8 9.467 26.413 9.083 1.00 0.00 C ATOM 76 N GLY 9 10.778 29.056 5.960 1.00 0.00 N ATOM 77 CA GLY 9 9.887 30.089 5.367 1.00 0.00 C ATOM 78 C GLY 9 8.607 29.576 4.716 1.00 0.00 C ATOM 79 O GLY 9 7.568 30.222 4.718 1.00 0.00 O ATOM 81 N SER 10 8.675 28.388 4.126 1.00 0.00 N ATOM 82 CA SER 10 7.559 27.887 3.495 1.00 0.00 C ATOM 83 C SER 10 6.461 27.666 4.530 1.00 0.00 C ATOM 84 O SER 10 5.288 27.937 4.308 1.00 0.00 O ATOM 86 CB SER 10 7.896 26.588 2.760 1.00 0.00 C ATOM 88 OG SER 10 8.795 26.826 1.690 1.00 0.00 O ATOM 89 N SER 11 6.837 27.146 5.693 1.00 0.00 N ATOM 90 CA SER 11 5.890 26.819 6.633 1.00 0.00 C ATOM 91 C SER 11 5.316 28.125 7.150 1.00 0.00 C ATOM 92 O SER 11 4.122 28.205 7.485 1.00 0.00 O ATOM 94 CB SER 11 6.511 25.975 7.747 1.00 0.00 C ATOM 96 OG SER 11 6.931 24.713 7.257 1.00 0.00 O ATOM 97 N TYR 12 6.100 29.179 7.272 1.00 0.00 N ATOM 98 CA TYR 12 5.617 30.416 7.696 1.00 0.00 C ATOM 99 C TYR 12 4.810 31.202 6.681 1.00 0.00 C ATOM 100 O TYR 12 3.811 31.854 7.032 1.00 0.00 O ATOM 102 CB TYR 12 6.770 31.312 8.153 1.00 0.00 C ATOM 103 CG TYR 12 6.327 32.662 8.671 1.00 0.00 C ATOM 105 OH TYR 12 5.107 36.369 10.108 1.00 0.00 O ATOM 106 CZ TYR 12 5.511 35.143 9.631 1.00 0.00 C ATOM 107 CD1 TYR 12 5.787 32.794 9.943 1.00 0.00 C ATOM 108 CE1 TYR 12 5.380 34.024 10.425 1.00 0.00 C ATOM 109 CD2 TYR 12 6.452 33.801 7.885 1.00 0.00 C ATOM 110 CE2 TYR 12 6.051 35.039 8.350 1.00 0.00 C ATOM 111 N VAL 13 5.189 31.217 5.418 1.00 0.00 N ATOM 112 CA VAL 13 4.613 32.138 4.428 1.00 0.00 C ATOM 113 C VAL 13 3.272 31.465 4.155 1.00 0.00 C ATOM 114 O VAL 13 2.274 32.157 4.255 1.00 0.00 O ATOM 116 CB VAL 13 5.530 32.293 3.201 1.00 0.00 C ATOM 117 CG1 VAL 13 4.844 33.119 2.124 1.00 0.00 C ATOM 118 CG2 VAL 13 6.852 32.929 3.602 1.00 0.00 C ATOM 119 N ALA 14 3.300 30.142 4.178 1.00 0.00 N ATOM 120 CA ALA 14 2.201 29.264 3.394 1.00 0.00 C ATOM 121 C ALA 14 1.625 29.571 4.762 1.00 0.00 C ATOM 122 O ALA 14 0.401 29.635 4.902 1.00 0.00 O ATOM 124 CB ALA 14 2.796 27.933 2.961 1.00 0.00 C ATOM 125 N GLU 15 2.467 29.756 5.781 1.00 0.00 N ATOM 126 CA GLU 15 1.922 30.123 7.188 1.00 0.00 C ATOM 127 C GLU 15 1.044 31.365 7.228 1.00 0.00 C ATOM 128 O GLU 15 0.366 31.610 8.219 1.00 0.00 O ATOM 130 CB GLU 15 3.076 30.326 8.173 1.00 0.00 C ATOM 131 CD GLU 15 2.254 31.942 9.931 1.00 0.00 C ATOM 132 CG GLU 15 2.635 30.509 9.616 1.00 0.00 C ATOM 133 OE1 GLU 15 2.741 32.854 9.232 1.00 0.00 O ATOM 134 OE2 GLU 15 1.465 32.152 10.877 1.00 0.00 O ATOM 135 N THR 16 1.053 32.151 6.158 1.00 0.00 N ATOM 136 CA THR 16 0.392 33.466 6.216 1.00 0.00 C ATOM 137 C THR 16 -1.026 33.140 5.702 1.00 0.00 C ATOM 138 O THR 16 -1.936 33.945 5.833 1.00 0.00 O ATOM 140 CB THR 16 1.142 34.513 5.371 1.00 0.00 C ATOM 142 OG1 THR 16 1.148 34.107 3.997 1.00 0.00 O ATOM 143 CG2 THR 16 2.581 34.646 5.845 1.00 0.00 C ATOM 144 N GLY 17 -1.209 31.962 5.113 1.00 0.00 N ATOM 145 CA GLY 17 -2.379 31.539 4.427 1.00 0.00 C ATOM 146 C GLY 17 -3.375 31.327 5.564 1.00 0.00 C ATOM 147 O GLY 17 -2.991 31.227 6.732 1.00 0.00 O ATOM 149 N GLN 18 -4.660 31.253 5.223 1.00 0.00 N ATOM 150 CA GLN 18 -5.619 31.005 6.280 1.00 0.00 C ATOM 151 C GLN 18 -5.390 30.457 7.687 1.00 0.00 C ATOM 152 O GLN 18 -5.062 31.217 8.600 1.00 0.00 O ATOM 154 CB GLN 18 -6.705 30.038 5.802 1.00 0.00 C ATOM 155 CD GLN 18 -8.883 28.861 6.297 1.00 0.00 C ATOM 156 CG GLN 18 -7.798 29.779 6.825 1.00 0.00 C ATOM 157 OE1 GLN 18 -8.845 28.440 5.142 1.00 0.00 O ATOM 160 NE2 GLN 18 -9.856 28.549 7.146 1.00 0.00 N ATOM 161 N ASN 19 -5.552 29.150 7.874 1.00 0.00 N ATOM 162 CA ASN 19 -5.312 28.583 9.180 1.00 0.00 C ATOM 163 C ASN 19 -3.945 28.793 9.829 1.00 0.00 C ATOM 164 O ASN 19 -3.818 28.730 11.053 1.00 0.00 O ATOM 166 CB ASN 19 -5.553 27.072 9.160 1.00 0.00 C ATOM 167 CG ASN 19 -7.025 26.718 9.075 1.00 0.00 C ATOM 168 OD1 ASN 19 -7.890 27.538 9.384 1.00 0.00 O ATOM 171 ND2 ASN 19 -7.315 25.492 8.656 1.00 0.00 N ATOM 172 N TRP 20 -2.938 29.072 9.007 1.00 0.00 N ATOM 173 CA TRP 20 -1.592 29.228 9.477 1.00 0.00 C ATOM 174 C TRP 20 -1.659 30.580 10.180 1.00 0.00 C ATOM 175 O TRP 20 -0.954 30.716 11.178 1.00 0.00 O ATOM 177 CB TRP 20 -0.605 29.159 8.309 1.00 0.00 C ATOM 180 CG TRP 20 -0.457 27.785 7.730 1.00 0.00 C ATOM 181 CD1 TRP 20 -0.940 27.344 6.532 1.00 0.00 C ATOM 183 NE1 TRP 20 -0.606 26.026 6.342 1.00 0.00 N ATOM 184 CD2 TRP 20 0.221 26.671 8.325 1.00 0.00 C ATOM 185 CE2 TRP 20 0.109 25.591 7.431 1.00 0.00 C ATOM 186 CH2 TRP 20 1.332 24.184 8.880 1.00 0.00 C ATOM 187 CZ2 TRP 20 0.661 24.339 7.699 1.00 0.00 C ATOM 188 CE3 TRP 20 0.914 26.484 9.525 1.00 0.00 C ATOM 189 CZ3 TRP 20 1.459 25.241 9.786 1.00 0.00 C ATOM 190 N ALA 21 -2.442 31.557 9.722 1.00 0.00 N ATOM 191 CA ALA 21 -2.357 32.843 10.434 1.00 0.00 C ATOM 192 C ALA 21 -3.431 33.866 10.786 1.00 0.00 C ATOM 193 O ALA 21 -3.106 34.778 11.527 1.00 0.00 O ATOM 195 CB ALA 21 -1.377 33.772 9.734 1.00 0.00 C ATOM 196 N SER 22 -4.672 33.478 10.540 1.00 0.00 N ATOM 197 CA SER 22 -5.861 34.221 11.129 1.00 0.00 C ATOM 198 C SER 22 -5.889 34.237 12.653 1.00 0.00 C ATOM 199 O SER 22 -6.588 35.062 13.247 1.00 0.00 O ATOM 201 CB SER 22 -7.174 33.617 10.627 1.00 0.00 C ATOM 203 OG SER 22 -7.359 32.307 11.133 1.00 0.00 O ATOM 204 N LEU 23 -5.124 33.370 13.305 1.00 0.00 N ATOM 205 CA LEU 23 -6.026 32.875 14.779 1.00 0.00 C ATOM 206 C LEU 23 -5.062 33.957 15.251 1.00 0.00 C ATOM 207 O LEU 23 -4.828 34.124 16.448 1.00 0.00 O ATOM 209 CB LEU 23 -5.860 31.375 15.030 1.00 0.00 C ATOM 210 CG LEU 23 -6.398 30.442 13.942 1.00 0.00 C ATOM 211 CD1 LEU 23 -6.092 28.990 14.281 1.00 0.00 C ATOM 212 CD2 LEU 23 -7.894 30.638 13.755 1.00 0.00 C ATOM 213 N ALA 24 -4.436 34.626 14.276 1.00 0.00 N ATOM 214 CA ALA 24 -2.940 34.883 13.901 1.00 0.00 C ATOM 215 C ALA 24 -2.735 36.203 14.644 1.00 0.00 C ATOM 216 O ALA 24 -1.603 36.689 14.697 1.00 0.00 O ATOM 218 CB ALA 24 -2.772 34.925 12.390 1.00 0.00 C ATOM 219 N ALA 25 -3.793 36.813 15.202 1.00 0.00 N ATOM 220 CA ALA 25 -3.638 38.131 15.767 1.00 0.00 C ATOM 221 C ALA 25 -2.988 37.774 17.103 1.00 0.00 C ATOM 222 O ALA 25 -2.183 38.542 17.632 1.00 0.00 O ATOM 224 CB ALA 25 -4.984 38.833 15.853 1.00 0.00 C ATOM 225 N ASN 26 -3.320 36.597 17.625 1.00 0.00 N ATOM 226 CA ASN 26 -2.858 36.147 18.973 1.00 0.00 C ATOM 227 C ASN 26 -1.368 35.877 18.756 1.00 0.00 C ATOM 228 O ASN 26 -0.539 36.228 19.597 1.00 0.00 O ATOM 230 CB ASN 26 -3.669 34.937 19.442 1.00 0.00 C ATOM 231 CG ASN 26 -3.357 34.546 20.873 1.00 0.00 C ATOM 232 OD1 ASN 26 -3.600 35.315 21.803 1.00 0.00 O ATOM 235 ND2 ASN 26 -2.819 33.346 21.054 1.00 0.00 N ATOM 236 N GLU 27 -1.029 35.252 17.628 1.00 0.00 N ATOM 237 CA GLU 27 0.427 34.982 17.274 1.00 0.00 C ATOM 238 C GLU 27 1.196 36.287 17.058 1.00 0.00 C ATOM 239 O GLU 27 2.381 36.376 17.380 1.00 0.00 O ATOM 241 CB GLU 27 0.521 34.106 16.023 1.00 0.00 C ATOM 242 CD GLU 27 0.122 31.849 14.962 1.00 0.00 C ATOM 243 CG GLU 27 0.058 32.673 16.232 1.00 0.00 C ATOM 244 OE1 GLU 27 0.148 32.448 13.865 1.00 0.00 O ATOM 245 OE2 GLU 27 0.146 30.604 15.061 1.00 0.00 O ATOM 246 N LEU 28 0.520 37.297 16.511 1.00 0.00 N ATOM 247 CA LEU 28 1.155 38.545 16.190 1.00 0.00 C ATOM 248 C LEU 28 1.186 39.457 17.422 1.00 0.00 C ATOM 249 O LEU 28 1.959 40.409 17.477 1.00 0.00 O ATOM 251 CB LEU 28 0.432 39.232 15.030 1.00 0.00 C ATOM 252 CG LEU 28 0.482 38.516 13.679 1.00 0.00 C ATOM 253 CD1 LEU 28 -0.379 39.238 12.655 1.00 0.00 C ATOM 254 CD2 LEU 28 1.916 38.407 13.182 1.00 0.00 C ATOM 255 N ARG 29 0.347 39.156 18.412 1.00 0.00 N ATOM 256 CA ARG 29 0.870 39.522 19.842 1.00 0.00 C ATOM 257 C ARG 29 0.068 40.761 19.465 1.00 0.00 C ATOM 258 O ARG 29 0.513 41.890 19.658 1.00 0.00 O ATOM 260 CB ARG 29 2.399 39.459 19.885 1.00 0.00 C ATOM 261 CD ARG 29 4.490 39.302 21.264 1.00 0.00 C ATOM 263 NE ARG 29 5.068 39.341 22.605 1.00 0.00 N ATOM 264 CG ARG 29 2.981 39.485 21.289 1.00 0.00 C ATOM 265 CZ ARG 29 6.370 39.245 22.861 1.00 0.00 C ATOM 268 NH1 ARG 29 6.804 39.292 24.113 1.00 0.00 N ATOM 271 NH2 ARG 29 7.232 39.106 21.864 1.00 0.00 N ATOM 272 N VAL 30 -1.101 40.505 18.909 1.00 0.00 N ATOM 273 CA VAL 30 -1.985 41.628 18.328 1.00 0.00 C ATOM 274 C VAL 30 -2.975 41.713 19.496 1.00 0.00 C ATOM 275 O VAL 30 -3.039 42.738 20.191 1.00 0.00 O ATOM 277 CB VAL 30 -2.558 41.241 16.952 1.00 0.00 C ATOM 278 CG1 VAL 30 -3.507 42.316 16.446 1.00 0.00 C ATOM 279 CG2 VAL 30 -1.433 41.005 15.955 1.00 0.00 C ATOM 280 N THR 31 -3.722 40.631 19.727 1.00 0.00 N ATOM 281 CA THR 31 -4.755 40.661 20.711 1.00 0.00 C ATOM 282 C THR 31 -4.357 39.939 22.006 1.00 0.00 C ATOM 283 O THR 31 -5.179 39.799 22.913 1.00 0.00 O ATOM 285 CB THR 31 -6.058 40.035 20.181 1.00 0.00 C ATOM 287 OG1 THR 31 -5.819 38.672 19.809 1.00 0.00 O ATOM 288 CG2 THR 31 -6.554 40.793 18.959 1.00 0.00 C ATOM 289 N GLU 32 -3.106 39.494 22.109 1.00 0.00 N ATOM 290 CA GLU 32 -2.559 38.592 23.069 1.00 0.00 C ATOM 291 C GLU 32 -2.026 39.245 24.344 1.00 0.00 C ATOM 292 O GLU 32 -0.818 39.345 24.532 1.00 0.00 O ATOM 294 CB GLU 32 -1.424 37.774 22.451 1.00 0.00 C ATOM 295 CD GLU 32 0.260 35.911 22.724 1.00 0.00 C ATOM 296 CG GLU 32 -0.846 36.716 23.377 1.00 0.00 C ATOM 297 OE1 GLU 32 0.826 36.388 21.718 1.00 0.00 O ATOM 298 OE2 GLU 32 0.561 34.805 23.218 1.00 0.00 O ATOM 299 N ARG 33 -2.920 39.724 25.199 1.00 0.00 N ATOM 300 CA ARG 33 -2.904 39.974 26.544 1.00 0.00 C ATOM 301 C ARG 33 -1.824 41.040 26.681 1.00 0.00 C ATOM 302 O ARG 33 -1.347 41.335 27.773 1.00 0.00 O ATOM 304 CB ARG 33 -2.622 38.689 27.325 1.00 0.00 C ATOM 305 CD ARG 33 -3.321 36.350 27.912 1.00 0.00 C ATOM 307 NE ARG 33 -1.949 35.870 27.768 1.00 0.00 N ATOM 308 CG ARG 33 -3.597 37.559 27.032 1.00 0.00 C ATOM 309 CZ ARG 33 -1.534 35.083 26.780 1.00 0.00 C ATOM 312 NH1 ARG 33 -0.267 34.695 26.730 1.00 0.00 N ATOM 315 NH2 ARG 33 -2.387 34.686 25.845 1.00 0.00 N ATOM 316 N PRO 34 -1.447 41.621 25.551 1.00 0.00 N ATOM 317 CA PRO 34 -0.256 42.634 25.519 1.00 0.00 C ATOM 318 C PRO 34 -0.632 43.771 24.588 1.00 0.00 C ATOM 319 O PRO 34 -1.690 43.744 23.954 1.00 0.00 O ATOM 320 CB PRO 34 0.921 41.806 24.999 1.00 0.00 C ATOM 321 CD PRO 34 -0.920 40.287 25.185 1.00 0.00 C ATOM 322 CG PRO 34 0.570 40.399 25.348 1.00 0.00 C ATOM 323 N PHE 35 0.221 44.788 24.528 1.00 0.00 N ATOM 324 CA PHE 35 0.023 45.917 23.538 1.00 0.00 C ATOM 325 C PHE 35 0.458 45.330 22.189 1.00 0.00 C ATOM 326 O PHE 35 0.730 44.137 22.125 1.00 0.00 O ATOM 328 CB PHE 35 0.831 47.146 23.958 1.00 0.00 C ATOM 329 CG PHE 35 0.328 47.804 25.211 1.00 0.00 C ATOM 330 CZ PHE 35 -0.611 49.024 27.525 1.00 0.00 C ATOM 331 CD1 PHE 35 1.074 47.772 26.375 1.00 0.00 C ATOM 332 CE1 PHE 35 0.611 48.377 27.527 1.00 0.00 C ATOM 333 CD2 PHE 35 -0.892 48.456 25.224 1.00 0.00 C ATOM 334 CE2 PHE 35 -1.356 49.062 26.377 1.00 0.00 C ATOM 335 N TRP 36 0.429 46.094 21.079 1.00 0.00 N ATOM 336 CA TRP 36 1.077 45.613 19.991 1.00 0.00 C ATOM 337 C TRP 36 2.541 45.727 20.350 1.00 0.00 C ATOM 338 O TRP 36 2.971 46.679 20.992 1.00 0.00 O ATOM 340 CB TRP 36 0.687 46.406 18.741 1.00 0.00 C ATOM 343 CG TRP 36 1.322 45.895 17.484 1.00 0.00 C ATOM 344 CD1 TRP 36 1.558 44.591 17.158 1.00 0.00 C ATOM 346 NE1 TRP 36 2.155 44.512 15.923 1.00 0.00 N ATOM 347 CD2 TRP 36 1.802 46.678 16.385 1.00 0.00 C ATOM 348 CE2 TRP 36 2.315 45.783 15.429 1.00 0.00 C ATOM 349 CH2 TRP 36 2.900 47.559 13.987 1.00 0.00 C ATOM 350 CZ2 TRP 36 2.868 46.214 14.224 1.00 0.00 C ATOM 351 CE3 TRP 36 1.847 48.050 16.116 1.00 0.00 C ATOM 352 CZ3 TRP 36 2.396 48.472 14.921 1.00 0.00 C ATOM 353 N ILE 37 3.307 44.737 19.900 1.00 0.00 N ATOM 354 CA ILE 37 4.699 44.784 19.352 1.00 0.00 C ATOM 355 C ILE 37 4.540 45.321 20.776 1.00 0.00 C ATOM 356 O ILE 37 4.649 46.529 21.026 1.00 0.00 O ATOM 358 CB ILE 37 4.762 45.589 18.040 1.00 0.00 C ATOM 359 CD1 ILE 37 3.913 43.607 16.681 1.00 0.00 C ATOM 360 CG1 ILE 37 3.727 45.065 17.043 1.00 0.00 C ATOM 361 CG2 ILE 37 6.169 45.560 17.466 1.00 0.00 C ATOM 362 N SER 38 4.318 44.388 21.703 1.00 0.00 N ATOM 363 CA SER 38 3.767 44.481 23.043 1.00 0.00 C ATOM 364 C SER 38 4.813 45.441 23.596 1.00 0.00 C ATOM 365 O SER 38 4.509 46.193 24.530 1.00 0.00 O ATOM 367 CB SER 38 3.678 43.094 23.683 1.00 0.00 C ATOM 369 OG SER 38 4.967 42.560 23.927 1.00 0.00 O ATOM 370 N SER 39 6.003 45.522 23.040 1.00 0.00 N ATOM 371 CA SER 39 7.087 46.424 23.492 1.00 0.00 C ATOM 372 C SER 39 6.942 47.789 22.821 1.00 0.00 C ATOM 373 O SER 39 7.241 48.812 23.426 1.00 0.00 O ATOM 375 CB SER 39 8.455 45.813 23.186 1.00 0.00 C ATOM 377 OG SER 39 8.670 45.716 21.789 1.00 0.00 O ATOM 378 N PHE 40 6.486 47.802 21.574 1.00 0.00 N ATOM 379 CA PHE 40 6.296 49.068 20.831 1.00 0.00 C ATOM 380 C PHE 40 5.211 49.949 21.419 1.00 0.00 C ATOM 381 O PHE 40 5.232 51.162 21.198 1.00 0.00 O ATOM 383 CB PHE 40 5.963 48.784 19.365 1.00 0.00 C ATOM 384 CG PHE 40 7.129 48.274 18.567 1.00 0.00 C ATOM 385 CZ PHE 40 9.284 47.330 17.085 1.00 0.00 C ATOM 386 CD1 PHE 40 8.283 47.842 19.198 1.00 0.00 C ATOM 387 CE1 PHE 40 9.356 47.372 18.464 1.00 0.00 C ATOM 388 CD2 PHE 40 7.073 48.225 17.185 1.00 0.00 C ATOM 389 CE2 PHE 40 8.146 47.755 16.451 1.00 0.00 C ATOM 390 N ILE 41 4.256 49.378 22.155 1.00 0.00 N ATOM 391 CA ILE 41 3.028 49.983 22.488 1.00 0.00 C ATOM 392 C ILE 41 3.691 51.113 23.251 1.00 0.00 C ATOM 393 O ILE 41 3.125 52.205 23.323 1.00 0.00 O ATOM 395 CB ILE 41 2.108 49.010 23.248 1.00 0.00 C ATOM 396 CD1 ILE 41 1.816 47.821 25.484 1.00 0.00 C ATOM 397 CG1 ILE 41 2.739 48.614 24.585 1.00 0.00 C ATOM 398 CG2 ILE 41 1.790 47.796 22.390 1.00 0.00 C ATOM 399 N GLY 42 4.870 50.883 23.832 1.00 0.00 N ATOM 400 CA GLY 42 5.551 51.909 24.665 1.00 0.00 C ATOM 401 C GLY 42 5.604 53.165 23.804 1.00 0.00 C ATOM 402 O GLY 42 5.384 54.246 24.345 1.00 0.00 O ATOM 404 N ARG 43 6.009 53.030 22.541 1.00 0.00 N ATOM 405 CA ARG 43 6.013 54.118 21.592 1.00 0.00 C ATOM 406 C ARG 43 5.036 54.454 20.446 1.00 0.00 C ATOM 407 O ARG 43 4.848 55.612 20.106 1.00 0.00 O ATOM 409 CB ARG 43 7.321 54.133 20.799 1.00 0.00 C ATOM 410 CD ARG 43 9.810 54.462 20.785 1.00 0.00 C ATOM 412 NE ARG 43 11.004 54.742 21.579 1.00 0.00 N ATOM 413 CG ARG 43 8.551 54.447 21.636 1.00 0.00 C ATOM 414 CZ ARG 43 12.237 54.780 21.085 1.00 0.00 C ATOM 417 NH1 ARG 43 13.263 55.041 21.883 1.00 0.00 N ATOM 420 NH2 ARG 43 12.441 54.556 19.794 1.00 0.00 N ATOM 421 N SER 44 4.420 53.437 19.848 1.00 0.00 N ATOM 422 CA SER 44 3.467 53.704 18.835 1.00 0.00 C ATOM 423 C SER 44 2.085 54.114 19.234 1.00 0.00 C ATOM 424 O SER 44 1.587 53.745 20.299 1.00 0.00 O ATOM 426 CB SER 44 3.294 52.483 17.928 1.00 0.00 C ATOM 428 OG SER 44 2.270 52.699 16.973 1.00 0.00 O ATOM 429 N LYS 45 1.464 54.900 18.368 1.00 0.00 N ATOM 430 CA LYS 45 0.154 55.405 18.591 1.00 0.00 C ATOM 431 C LYS 45 -0.796 54.216 18.497 1.00 0.00 C ATOM 432 O LYS 45 -1.799 54.123 19.193 1.00 0.00 O ATOM 434 CB LYS 45 -0.179 56.500 17.575 1.00 0.00 C ATOM 435 CD LYS 45 0.230 58.826 16.726 1.00 0.00 C ATOM 436 CE LYS 45 1.007 60.117 16.927 1.00 0.00 C ATOM 437 CG LYS 45 0.600 57.790 17.774 1.00 0.00 C ATOM 441 NZ LYS 45 0.686 61.127 15.882 1.00 0.00 N TER END