####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 44 ( 344), selected 44 , name T0953s2TS244_1-D1 # Molecule2: number of CA atoms 44 ( 344), selected 44 , name T0953s2-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS244_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 6 - 22 4.96 14.37 LONGEST_CONTINUOUS_SEGMENT: 17 18 - 34 4.89 17.60 LONGEST_CONTINUOUS_SEGMENT: 17 19 - 35 4.56 17.61 LCS_AVERAGE: 36.16 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 15 - 22 1.66 17.16 LONGEST_CONTINUOUS_SEGMENT: 8 21 - 28 1.89 15.55 LCS_AVERAGE: 15.39 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 17 - 22 0.85 17.03 LCS_AVERAGE: 9.40 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 44 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 2 A 2 4 6 10 4 4 5 5 10 11 12 13 17 20 21 22 24 24 26 27 27 29 30 33 LCS_GDT V 3 V 3 4 6 10 4 4 5 5 10 11 12 14 18 20 21 22 24 24 26 27 28 29 32 34 LCS_GDT Q 4 Q 4 4 6 14 4 4 5 6 10 11 12 14 18 20 21 22 24 24 26 27 28 29 32 34 LCS_GDT G 5 G 5 4 6 14 4 4 5 5 10 11 12 13 17 20 21 22 24 24 26 27 28 29 32 33 LCS_GDT P 6 P 6 3 6 17 2 5 5 5 10 11 12 14 18 20 21 22 24 24 26 27 28 29 32 34 LCS_GDT W 7 W 7 3 6 17 2 3 3 6 6 10 11 14 18 20 21 22 24 24 26 27 28 29 32 34 LCS_GDT V 8 V 8 3 5 17 1 3 3 5 6 9 10 11 18 20 21 22 24 24 26 27 28 29 32 34 LCS_GDT G 9 G 9 3 5 17 3 4 4 5 6 9 9 11 14 16 20 21 24 24 26 27 28 29 32 34 LCS_GDT S 10 S 10 3 5 17 3 3 3 4 6 9 9 11 13 16 18 20 22 23 26 26 28 29 32 34 LCS_GDT S 11 S 11 3 5 17 3 3 4 4 6 7 8 11 13 16 18 20 22 23 26 26 28 29 32 34 LCS_GDT Y 12 Y 12 3 5 17 3 3 4 4 6 7 7 9 9 13 15 19 22 23 26 26 28 29 32 34 LCS_GDT V 13 V 13 3 5 17 3 3 4 4 6 8 8 11 13 16 18 20 22 23 26 26 28 29 32 34 LCS_GDT A 14 A 14 4 5 17 3 4 4 6 7 8 8 10 11 16 18 20 22 23 26 26 28 29 32 34 LCS_GDT E 15 E 15 4 8 17 3 4 6 7 7 8 8 10 11 13 14 17 19 23 26 26 28 29 32 33 LCS_GDT T 16 T 16 4 8 17 3 4 4 6 7 7 8 9 11 13 16 20 22 23 26 26 28 29 32 34 LCS_GDT G 17 G 17 6 8 17 3 5 6 7 7 8 8 11 13 16 18 20 22 23 26 26 28 29 32 34 LCS_GDT Q 18 Q 18 6 8 17 3 5 6 7 7 8 8 11 13 16 20 21 24 24 26 27 28 29 32 34 LCS_GDT N 19 N 19 6 8 17 3 4 6 7 7 10 11 14 18 20 21 22 24 24 26 27 28 29 32 34 LCS_GDT W 20 W 20 6 8 17 3 5 6 7 7 8 12 13 17 20 21 22 24 24 26 27 28 29 32 34 LCS_GDT A 21 A 21 6 8 17 3 5 6 7 10 11 12 13 18 20 21 22 24 24 26 27 28 29 32 34 LCS_GDT S 22 S 22 6 8 17 3 5 6 7 8 10 11 13 18 20 21 22 24 24 26 27 28 29 32 34 LCS_GDT L 23 L 23 4 8 17 3 4 4 7 8 10 11 14 18 20 21 22 24 24 26 27 28 29 32 34 LCS_GDT A 24 A 24 5 8 17 4 4 5 7 10 11 12 14 18 20 21 22 24 24 26 27 28 29 32 34 LCS_GDT A 25 A 25 5 8 17 4 4 5 6 10 11 12 14 18 20 21 22 24 24 26 27 28 29 32 34 LCS_GDT N 26 N 26 5 8 17 4 4 5 6 10 11 12 14 18 20 21 22 24 24 26 27 28 29 32 34 LCS_GDT E 27 E 27 5 8 17 4 4 5 7 10 11 12 14 18 20 21 22 24 24 26 27 28 29 32 34 LCS_GDT L 28 L 28 5 8 17 3 4 5 6 8 11 12 14 18 20 21 22 24 24 26 27 28 29 32 34 LCS_GDT R 29 R 29 4 7 17 3 4 5 6 8 10 11 12 14 20 21 22 24 24 26 27 28 29 32 34 LCS_GDT V 30 V 30 4 7 17 3 4 5 7 8 10 11 12 14 16 18 20 22 23 26 27 28 29 32 34 LCS_GDT T 31 T 31 4 7 17 3 4 5 6 7 10 11 12 14 16 18 20 22 23 26 26 28 29 31 34 LCS_GDT E 32 E 32 4 7 17 3 4 5 7 8 10 11 12 14 14 17 18 19 21 26 26 28 29 30 31 LCS_GDT R 33 R 33 3 7 17 3 3 4 5 8 10 11 12 14 14 14 16 16 17 20 23 25 25 30 31 LCS_GDT P 34 P 34 3 7 17 1 3 3 5 7 9 11 12 14 14 14 16 16 16 17 21 25 25 29 31 LCS_GDT F 35 F 35 4 6 17 0 4 5 5 7 9 10 10 11 14 15 18 22 24 26 27 28 29 32 34 LCS_GDT W 36 W 36 4 6 16 3 4 5 5 7 9 11 13 18 20 21 22 24 24 26 27 28 29 32 34 LCS_GDT I 37 I 37 4 6 14 3 4 5 5 7 10 11 14 18 20 21 22 24 24 26 27 28 29 32 34 LCS_GDT S 38 S 38 4 6 14 3 4 5 6 7 9 10 14 18 20 21 22 24 24 26 27 28 29 32 34 LCS_GDT S 39 S 39 4 7 14 1 5 5 6 6 9 9 14 18 20 21 22 24 24 26 27 28 29 32 34 LCS_GDT F 40 F 40 4 7 14 3 5 5 6 6 9 9 9 11 11 12 14 17 20 23 25 27 29 32 34 LCS_GDT I 41 I 41 4 7 14 3 5 5 6 6 7 8 11 13 16 18 20 22 23 26 27 28 29 32 34 LCS_GDT G 42 G 42 4 7 14 3 5 5 6 7 9 9 10 11 13 17 19 22 23 25 26 28 29 30 32 LCS_GDT R 43 R 43 4 7 14 3 4 5 5 7 9 9 10 10 11 12 15 16 22 23 25 28 29 30 31 LCS_GDT S 44 S 44 4 7 14 3 4 4 5 7 9 9 10 10 11 12 14 14 15 16 16 19 20 22 25 LCS_GDT K 45 K 45 3 7 14 3 3 3 5 6 9 9 10 10 11 12 13 13 15 16 16 17 17 17 19 LCS_AVERAGE LCS_A: 20.32 ( 9.40 15.39 36.16 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 6 7 10 11 12 14 18 20 21 22 24 24 26 27 28 29 32 34 GDT PERCENT_AT 9.09 11.36 13.64 15.91 22.73 25.00 27.27 31.82 40.91 45.45 47.73 50.00 54.55 54.55 59.09 61.36 63.64 65.91 72.73 77.27 GDT RMS_LOCAL 0.33 0.62 0.85 1.08 1.85 1.98 2.16 2.62 3.49 3.48 3.66 3.87 4.27 4.27 4.75 4.93 5.70 5.68 6.42 6.82 GDT RMS_ALL_AT 12.83 17.81 17.03 16.40 12.40 12.36 12.31 11.58 11.49 11.85 11.68 11.58 11.29 11.29 11.26 11.14 10.22 10.59 10.18 9.92 # Checking swapping # possible swapping detected: E 32 E 32 # possible swapping detected: F 35 F 35 # possible swapping detected: F 40 F 40 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA A 2 A 2 4.664 0 0.085 0.076 6.829 3.636 3.273 - LGA V 3 V 3 2.746 0 0.048 0.083 6.003 49.545 29.091 5.844 LGA Q 4 Q 4 0.520 0 0.147 0.732 5.551 52.727 30.909 5.551 LGA G 5 G 5 4.397 0 0.133 0.133 4.545 9.091 9.091 - LGA P 6 P 6 2.836 0 0.507 0.497 3.642 23.636 21.558 3.062 LGA W 7 W 7 2.798 0 0.458 0.406 6.712 17.727 7.403 6.021 LGA V 8 V 8 5.516 0 0.600 1.337 8.519 1.364 0.779 7.660 LGA G 9 G 9 6.423 0 0.397 0.397 8.013 0.000 0.000 - LGA S 10 S 10 11.734 0 0.355 0.561 15.458 0.000 0.000 13.039 LGA S 11 S 11 15.662 0 0.667 0.605 18.169 0.000 0.000 18.169 LGA Y 12 Y 12 15.890 0 0.564 1.306 17.796 0.000 0.000 11.491 LGA V 13 V 13 13.570 0 0.690 0.887 15.892 0.000 0.000 10.601 LGA A 14 A 14 16.850 0 0.640 0.596 16.969 0.000 0.000 - LGA E 15 E 15 18.134 0 0.196 0.891 25.310 0.000 0.000 24.878 LGA T 16 T 16 14.907 0 0.232 0.915 17.630 0.000 0.000 13.606 LGA G 17 G 17 12.982 0 0.311 0.311 13.572 0.000 0.000 - LGA Q 18 Q 18 8.456 0 0.240 0.976 14.941 0.455 0.202 13.232 LGA N 19 N 19 3.905 0 0.447 0.907 6.944 2.727 9.091 3.287 LGA W 20 W 20 7.138 0 0.229 1.136 15.708 0.000 0.000 15.708 LGA A 21 A 21 6.314 0 0.505 0.467 8.320 0.000 0.000 - LGA S 22 S 22 6.735 0 0.217 0.672 10.047 0.455 0.303 10.047 LGA L 23 L 23 3.303 0 0.139 0.884 5.601 21.364 17.500 3.453 LGA A 24 A 24 1.554 0 0.361 0.349 3.227 65.909 56.364 - LGA A 25 A 25 1.586 0 0.266 0.266 2.578 59.091 52.727 - LGA N 26 N 26 1.599 0 0.148 0.993 2.674 58.182 50.227 2.674 LGA E 27 E 27 1.374 0 0.499 1.044 3.614 74.091 52.929 1.248 LGA L 28 L 28 1.300 0 0.385 1.050 4.423 36.364 29.318 2.769 LGA R 29 R 29 7.754 0 0.436 0.997 11.416 0.000 0.000 11.416 LGA V 30 V 30 10.764 0 0.123 1.073 14.629 0.000 0.000 11.424 LGA T 31 T 31 17.450 0 0.715 0.601 18.647 0.000 0.000 18.157 LGA E 32 E 32 20.040 0 0.509 1.123 22.839 0.000 0.000 22.839 LGA R 33 R 33 19.027 0 0.203 1.254 19.961 0.000 0.000 17.545 LGA P 34 P 34 15.348 0 0.254 0.284 20.064 0.000 0.000 18.681 LGA F 35 F 35 9.668 0 0.299 1.396 11.220 0.000 0.000 5.395 LGA W 36 W 36 5.523 0 0.124 1.141 16.895 11.364 3.247 16.895 LGA I 37 I 37 2.730 0 0.176 1.589 7.830 19.091 9.545 7.830 LGA S 38 S 38 3.584 0 0.201 0.595 5.435 21.818 14.545 5.435 LGA S 39 S 39 3.849 0 0.273 0.736 7.786 12.273 8.182 5.587 LGA F 40 F 40 9.520 0 0.157 0.619 14.541 0.000 0.000 14.541 LGA I 41 I 41 9.099 0 0.400 0.657 12.497 0.000 5.000 2.484 LGA G 42 G 42 15.689 0 0.287 0.287 19.649 0.000 0.000 - LGA R 43 R 43 18.160 0 0.124 1.358 20.677 0.000 0.000 14.769 LGA S 44 S 44 23.808 0 0.039 0.684 25.088 0.000 0.000 23.621 LGA K 45 K 45 27.254 0 0.657 0.887 33.123 0.000 0.000 32.269 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 44 176 176 100.00 344 344 100.00 44 35 SUMMARY(RMSD_GDC): 9.626 9.703 11.012 12.293 9.347 6.078 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 44 44 4.0 14 2.62 30.114 27.961 0.515 LGA_LOCAL RMSD: 2.619 Number of atoms: 14 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.582 Number of assigned atoms: 44 Std_ASGN_ATOMS RMSD: 9.626 Standard rmsd on all 44 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.320840 * X + 0.367340 * Y + 0.872997 * Z + -11.106257 Y_new = -0.888709 * X + 0.435476 * Y + 0.143374 * Z + 61.191643 Z_new = -0.327502 * X + -0.821840 * Y + 0.466177 * Z + 15.781999 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.224340 0.333659 -1.054817 [DEG: -70.1495 19.1173 -60.4366 ] ZXZ: 1.733575 1.085832 -2.762381 [DEG: 99.3266 62.2136 -158.2728 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0953s2TS244_1-D1 REMARK 2: T0953s2-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS244_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 44 44 4.0 14 2.62 27.961 9.63 REMARK ---------------------------------------------------------- MOLECULE T0953s2TS244_1-D1 PFRMAT TS TARGET T0953s2 MODEL 1 PARENT 4peuA ATOM 12 N ALA 2 10.483 41.940 12.910 1.00 44.43 N ATOM 14 CA ALA 2 9.563 40.803 13.013 1.00 42.46 C ATOM 15 CB ALA 2 8.177 41.170 12.471 1.00 49.46 C ATOM 16 C ALA 2 10.223 39.773 12.115 1.00 40.65 C ATOM 17 O ALA 2 11.019 40.153 11.243 1.00 44.04 O ATOM 18 N VAL 3 9.901 38.487 12.292 1.00 38.84 N ATOM 20 CA VAL 3 10.524 37.454 11.460 1.00 38.99 C ATOM 21 CB VAL 3 10.688 36.060 12.152 1.00 39.69 C ATOM 22 CG1 VAL 3 11.245 35.024 11.198 1.00 43.75 C ATOM 23 CG2 VAL 3 11.616 36.178 13.357 1.00 49.10 C ATOM 24 C VAL 3 9.668 37.405 10.216 1.00 37.33 C ATOM 25 O VAL 3 8.441 37.251 10.248 1.00 39.15 O ATOM 26 N GLN 4 10.387 37.665 9.131 1.00 39.15 N ATOM 28 CA GLN 4 9.858 37.760 7.801 1.00 39.92 C ATOM 29 CB GLN 4 10.467 38.982 7.080 1.00 42.28 C ATOM 30 CG GLN 4 12.016 39.138 7.129 1.00 45.13 C ATOM 31 CD GLN 4 12.503 40.369 6.390 1.00 45.33 C ATOM 32 OE1 GLN 4 12.759 40.323 5.186 1.00 49.59 O ATOM 33 NE2 GLN 4 12.632 41.480 7.108 1.00 49.71 N ATOM 36 C GLN 4 10.083 36.512 6.992 1.00 38.47 C ATOM 37 O GLN 4 11.225 36.111 6.723 1.00 44.23 O ATOM 38 N GLY 5 8.972 35.843 6.708 1.00 36.78 N ATOM 40 CA GLY 5 9.047 34.694 5.849 1.00 35.54 C ATOM 41 C GLY 5 8.367 35.320 4.646 1.00 36.25 C ATOM 42 O GLY 5 7.548 36.222 4.857 1.00 39.61 O ATOM 43 N PRO 6 8.749 34.997 3.388 1.00 38.55 N ATOM 44 CD PRO 6 10.123 34.760 2.898 1.00 45.43 C ATOM 45 CA PRO 6 7.983 35.676 2.335 1.00 42.10 C ATOM 46 CB PRO 6 9.055 36.110 1.330 1.00 47.59 C ATOM 47 CG PRO 6 10.348 36.002 2.072 1.00 47.70 C ATOM 48 C PRO 6 6.957 34.755 1.693 1.00 42.64 C ATOM 49 O PRO 6 7.241 34.068 0.705 1.00 48.27 O ATOM 50 N TRP 7 5.797 34.690 2.335 1.00 38.47 N ATOM 52 CA TRP 7 4.679 33.900 1.861 1.00 38.18 C ATOM 53 CB TRP 7 4.364 32.712 2.773 1.00 33.03 C ATOM 54 CG TRP 7 5.430 31.602 2.806 1.00 34.80 C ATOM 55 CD2 TRP 7 5.568 30.485 1.896 1.00 38.47 C ATOM 56 CE2 TRP 7 6.672 29.709 2.352 1.00 42.37 C ATOM 57 CE3 TRP 7 4.868 30.061 0.742 1.00 44.33 C ATOM 58 CD1 TRP 7 6.430 31.450 3.739 1.00 37.33 C ATOM 59 NE1 TRP 7 7.170 30.324 3.470 1.00 44.63 N ATOM 61 CZ2 TRP 7 7.100 28.530 1.695 1.00 48.98 C ATOM 62 CZ3 TRP 7 5.294 28.881 0.082 1.00 47.81 C ATOM 63 CH2 TRP 7 6.403 28.133 0.568 1.00 49.96 C ATOM 64 C TRP 7 3.543 34.884 1.778 1.00 37.68 C ATOM 65 O TRP 7 3.531 35.898 2.489 1.00 37.68 O ATOM 66 N VAL 8 2.581 34.565 0.924 1.00 37.47 N ATOM 68 CA VAL 8 1.454 35.442 0.657 1.00 38.40 C ATOM 69 CB VAL 8 1.149 35.519 -0.860 1.00 44.73 C ATOM 70 CG1 VAL 8 2.240 36.319 -1.523 1.00 49.34 C ATOM 71 CG2 VAL 8 1.047 34.117 -1.506 1.00 47.93 C ATOM 72 C VAL 8 0.196 35.311 1.497 1.00 37.33 C ATOM 73 O VAL 8 -0.036 34.291 2.154 1.00 33.92 O ATOM 74 N GLY 9 -0.554 36.414 1.502 1.00 43.28 N ATOM 76 CA GLY 9 -1.769 36.587 2.273 1.00 42.28 C ATOM 77 C GLY 9 -2.822 35.543 2.513 1.00 38.40 C ATOM 78 O GLY 9 -2.672 34.365 2.166 1.00 36.05 O ATOM 79 N SER 10 -3.898 36.028 3.130 1.00 41.24 N ATOM 81 CA SER 10 -5.044 35.224 3.514 1.00 40.00 C ATOM 82 CB SER 10 -5.598 35.733 4.838 1.00 46.59 C ATOM 83 OG SER 10 -4.567 35.755 5.808 1.00 44.53 O ATOM 85 C SER 10 -6.101 35.163 2.421 1.00 41.92 C ATOM 86 O SER 10 -7.302 35.345 2.647 1.00 49.22 O ATOM 87 N SER 11 -5.582 34.900 1.224 1.00 40.08 N ATOM 89 CA SER 11 -6.320 34.710 -0.018 1.00 43.19 C ATOM 90 OG SER 11 -6.146 34.688 -2.451 1.00 48.86 O ATOM 92 C SER 11 -6.591 33.228 0.043 1.00 37.82 C ATOM 93 O SER 11 -5.749 32.488 0.560 1.00 36.12 O ATOM 94 CB SER 11 -5.471 35.032 -1.248 1.00 46.49 C ATOM 95 N TYR 12 -7.800 32.799 -0.312 1.00 40.24 N ATOM 97 CA TYR 12 -8.097 31.379 -0.246 1.00 38.40 C ATOM 98 CB TYR 12 -9.597 31.109 -0.401 1.00 43.19 C ATOM 99 CG TYR 12 -10.457 31.589 0.770 1.00 42.55 C ATOM 100 CD1 TYR 12 -10.749 30.735 1.864 1.00 43.56 C ATOM 101 CE1 TYR 12 -11.582 31.164 2.935 1.00 47.48 C ATOM 102 CD2 TYR 12 -11.025 32.889 0.779 1.00 46.59 C ATOM 103 CE2 TYR 12 -11.859 33.325 1.846 1.00 47.25 C ATOM 104 CZ TYR 12 -12.129 32.456 2.915 1.00 46.49 C ATOM 105 OH TYR 12 -12.935 32.872 3.952 1.00 49.96 O ATOM 107 C TYR 12 -7.228 30.688 -1.299 1.00 40.98 C ATOM 108 O TYR 12 -7.517 30.573 -2.496 1.00 49.10 O ATOM 109 N VAL 13 -6.038 30.452 -0.734 1.00 38.25 N ATOM 111 CA VAL 13 -4.826 29.791 -1.213 1.00 42.46 C ATOM 112 CB VAL 13 -3.552 30.227 -0.363 1.00 40.57 C ATOM 113 CG1 VAL 13 -3.713 29.897 1.145 1.00 36.25 C ATOM 114 CG2 VAL 13 -2.264 29.621 -0.943 1.00 48.16 C ATOM 115 C VAL 13 -5.357 28.435 -0.796 1.00 40.49 C ATOM 116 O VAL 13 -6.437 28.397 -0.197 1.00 40.65 O ATOM 117 N ALA 14 -4.727 27.339 -1.195 1.00 45.13 N ATOM 119 CA ALA 14 -5.244 26.037 -0.800 1.00 44.93 C ATOM 120 CB ALA 14 -4.213 25.020 -1.101 1.00 50.58 C ATOM 121 C ALA 14 -5.330 26.354 0.704 1.00 37.82 C ATOM 122 O ALA 14 -4.320 26.469 1.405 1.00 36.18 O ATOM 123 N GLU 15 -6.588 26.444 1.172 1.00 39.85 N ATOM 125 CA GLU 15 -6.955 26.958 2.507 1.00 37.96 C ATOM 126 CB GLU 15 -8.466 27.270 2.575 1.00 41.66 C ATOM 127 CG GLU 15 -9.411 26.191 2.030 1.00 46.06 C ATOM 128 CD GLU 15 -10.872 26.583 2.138 1.00 46.49 C ATOM 129 OE1 GLU 15 -11.397 27.196 1.184 1.00 50.46 O ATOM 130 OE2 GLU 15 -11.497 26.277 3.175 1.00 51.36 O ATOM 131 C GLU 15 -6.495 26.158 3.706 1.00 40.24 C ATOM 132 O GLU 15 -6.742 26.536 4.863 1.00 45.74 O ATOM 133 N THR 16 -5.817 25.049 3.414 1.00 38.40 N ATOM 135 CA THR 16 -5.185 24.281 4.470 1.00 39.69 C ATOM 136 CB THR 16 -5.636 22.774 4.427 1.00 46.59 C ATOM 137 OG1 THR 16 -4.679 21.947 5.103 1.00 50.46 O ATOM 139 CG2 THR 16 -5.849 22.290 2.992 1.00 49.22 C ATOM 140 C THR 16 -3.690 24.511 4.137 1.00 36.31 C ATOM 141 O THR 16 -2.910 24.897 5.006 1.00 35.80 O ATOM 142 N GLY 17 -3.342 24.235 2.871 1.00 40.98 N ATOM 144 CA GLY 17 -2.046 24.481 2.233 1.00 45.13 C ATOM 145 C GLY 17 -0.716 24.419 2.930 1.00 44.14 C ATOM 146 O GLY 17 0.178 23.628 2.615 1.00 50.46 O ATOM 147 N GLN 18 -0.627 25.358 3.869 1.00 38.62 N ATOM 149 CA GLN 18 0.477 25.576 4.782 1.00 39.07 C ATOM 150 CB GLN 18 1.118 26.949 4.533 1.00 37.26 C ATOM 151 CG GLN 18 1.974 26.992 3.282 1.00 43.47 C ATOM 152 CD GLN 18 2.629 28.344 3.070 1.00 40.90 C ATOM 153 OE1 GLN 18 3.727 28.597 3.568 1.00 37.75 O ATOM 154 NE2 GLN 18 1.957 29.219 2.331 1.00 42.73 N ATOM 157 C GLN 18 -0.220 25.481 6.129 1.00 36.31 C ATOM 158 O GLN 18 -0.557 26.518 6.720 1.00 32.87 O ATOM 159 N ASN 19 -0.508 24.268 6.611 1.00 41.49 N ATOM 161 CA ASN 19 -1.233 24.193 7.871 1.00 39.69 C ATOM 162 CB ASN 19 -2.049 22.902 7.964 1.00 45.33 C ATOM 163 CG ASN 19 -3.398 23.106 8.648 1.00 43.47 C ATOM 164 OD1 ASN 19 -4.402 23.392 7.993 1.00 47.03 O ATOM 165 ND2 ASN 19 -3.426 22.939 9.968 1.00 48.62 N ATOM 168 C ASN 19 -0.347 24.402 9.097 1.00 40.90 C ATOM 169 O ASN 19 -0.202 23.557 9.976 1.00 48.27 O ATOM 170 N TRP 20 0.239 25.597 9.075 1.00 36.31 N ATOM 172 CA TRP 20 1.004 26.232 10.127 1.00 39.38 C ATOM 173 CB TRP 20 2.321 26.800 9.581 1.00 35.05 C ATOM 174 CG TRP 20 3.396 25.756 9.263 1.00 37.96 C ATOM 175 CD2 TRP 20 3.952 25.421 7.972 1.00 39.92 C ATOM 176 CE2 TRP 20 4.950 24.426 8.190 1.00 45.64 C ATOM 177 CE3 TRP 20 3.710 25.860 6.652 1.00 39.22 C ATOM 178 CD1 TRP 20 4.073 24.965 10.174 1.00 45.74 C ATOM 179 NE1 TRP 20 4.994 24.176 9.535 1.00 49.59 N ATOM 181 CZ2 TRP 20 5.708 23.862 7.135 1.00 49.46 C ATOM 182 CZ3 TRP 20 4.468 25.296 5.594 1.00 45.64 C ATOM 183 CH2 TRP 20 5.454 24.306 5.851 1.00 50.46 C ATOM 184 C TRP 20 -0.120 27.240 10.063 1.00 37.40 C ATOM 185 O TRP 20 -0.008 28.252 9.358 1.00 34.51 O ATOM 186 N ALA 21 -1.193 26.964 10.810 1.00 41.32 N ATOM 188 CA ALA 21 -2.418 27.757 10.754 1.00 39.53 C ATOM 189 CB ALA 21 -3.513 27.098 11.530 1.00 47.25 C ATOM 190 C ALA 21 -2.070 29.109 11.312 1.00 38.47 C ATOM 191 O ALA 21 -2.416 29.478 12.434 1.00 42.10 O ATOM 192 N SER 22 -1.396 29.855 10.425 1.00 35.80 N ATOM 194 CA SER 22 -0.872 31.184 10.684 1.00 33.08 C ATOM 195 CB SER 22 0.158 31.573 9.637 1.00 30.66 C ATOM 196 OG SER 22 1.412 30.999 9.950 1.00 31.68 O ATOM 198 C SER 22 -1.987 32.212 10.877 1.00 31.28 C ATOM 199 O SER 22 -1.727 33.403 11.077 1.00 30.20 O ATOM 200 N LEU 23 -3.189 31.647 11.104 1.00 34.74 N ATOM 202 CA LEU 23 -4.431 32.350 11.457 1.00 36.85 C ATOM 203 CB LEU 23 -5.625 31.364 11.441 1.00 43.28 C ATOM 204 CG LEU 23 -7.161 31.557 11.615 1.00 46.59 C ATOM 205 CD1 LEU 23 -7.543 31.980 13.043 1.00 49.10 C ATOM 206 CD2 LEU 23 -7.784 32.501 10.574 1.00 49.34 C ATOM 207 C LEU 23 -3.999 32.683 12.890 1.00 39.53 C ATOM 208 O LEU 23 -4.522 33.588 13.526 1.00 42.01 O ATOM 209 N ALA 24 -2.883 32.026 13.250 1.00 39.15 N ATOM 211 CA ALA 24 -2.102 32.132 14.490 1.00 41.58 C ATOM 212 CB ALA 24 -1.132 30.944 14.568 1.00 46.70 C ATOM 213 C ALA 24 -1.298 33.448 14.368 1.00 35.11 C ATOM 214 O ALA 24 -0.159 33.556 14.857 1.00 35.99 O ATOM 215 N ALA 25 -1.898 34.428 13.677 1.00 33.14 N ATOM 217 CA ALA 25 -1.301 35.745 13.449 1.00 33.25 C ATOM 218 CB ALA 25 -1.851 36.343 12.165 1.00 36.85 C ATOM 219 C ALA 25 -1.589 36.668 14.634 1.00 37.96 C ATOM 220 O ALA 25 -1.274 37.860 14.585 1.00 42.37 O ATOM 221 N ASN 26 -2.143 36.079 15.704 1.00 38.11 N ATOM 223 CA ASN 26 -2.489 36.797 16.933 1.00 42.82 C ATOM 224 CB ASN 26 -3.969 36.538 17.281 1.00 48.04 C ATOM 225 CG ASN 26 -4.314 35.050 17.380 1.00 44.63 C ATOM 226 OD1 ASN 26 -4.708 34.426 16.392 1.00 47.48 O ATOM 227 ND2 ASN 26 -4.181 34.487 18.577 1.00 48.86 N ATOM 230 C ASN 26 -1.581 36.483 18.140 1.00 40.16 C ATOM 231 O ASN 26 -1.628 37.186 19.150 1.00 47.81 O ATOM 232 N GLU 27 -0.714 35.475 17.989 1.00 36.18 N ATOM 234 CA GLU 27 0.251 35.058 19.023 1.00 41.58 C ATOM 235 CG GLU 27 -0.956 33.380 20.527 1.00 45.23 C ATOM 236 CD GLU 27 -1.133 31.920 20.897 1.00 45.33 C ATOM 237 OE1 GLU 27 -0.403 31.436 21.788 1.00 50.58 O ATOM 238 OE2 GLU 27 -2.006 31.254 20.299 1.00 48.86 O ATOM 239 C GLU 27 1.627 35.317 18.413 1.00 40.73 C ATOM 240 O GLU 27 2.322 34.382 17.993 1.00 41.66 O ATOM 241 CB GLU 27 0.056 33.586 19.412 1.00 42.82 C ATOM 242 N LEU 28 2.103 36.555 18.561 1.00 43.66 N ATOM 244 CA LEU 28 3.354 36.942 17.921 1.00 40.57 C ATOM 245 CB LEU 28 3.342 38.455 17.582 1.00 47.36 C ATOM 246 CG LEU 28 2.643 39.190 16.398 1.00 47.93 C ATOM 247 CD1 LEU 28 3.364 38.962 15.064 1.00 46.49 C ATOM 248 CD2 LEU 28 1.134 38.917 16.292 1.00 47.48 C ATOM 249 C LEU 28 4.668 36.514 18.584 1.00 43.09 C ATOM 250 O LEU 28 5.263 37.213 19.409 1.00 49.71 O ATOM 251 N ARG 29 5.008 35.265 18.239 1.00 40.16 N ATOM 253 CA ARG 29 6.246 34.542 18.568 1.00 43.00 C ATOM 254 CB ARG 29 5.941 33.273 19.383 1.00 44.43 C ATOM 255 CG ARG 29 7.164 32.623 20.032 1.00 47.03 C ATOM 256 CD ARG 29 6.801 31.370 20.826 1.00 49.22 C ATOM 257 NE ARG 29 6.387 30.253 19.970 1.00 46.59 N ATOM 259 CZ ARG 29 6.018 29.047 20.405 1.00 47.03 C ATOM 260 NH1 ARG 29 6.000 28.759 21.703 1.00 50.08 N ATOM 263 NH2 ARG 29 5.664 28.117 19.530 1.00 51.49 N ATOM 266 C ARG 29 6.370 34.251 17.071 1.00 39.77 C ATOM 267 O ARG 29 5.861 33.238 16.576 1.00 39.77 O ATOM 268 N VAL 30 7.196 35.052 16.404 1.00 42.55 N ATOM 270 CA VAL 30 7.272 35.027 14.951 1.00 36.71 C ATOM 271 CB VAL 30 7.279 36.528 14.421 1.00 37.75 C ATOM 272 CG1 VAL 30 8.540 37.284 14.875 1.00 44.53 C ATOM 273 CG2 VAL 30 7.021 36.618 12.912 1.00 36.85 C ATOM 274 C VAL 30 8.257 34.074 14.253 1.00 38.84 C ATOM 275 O VAL 30 9.472 34.087 14.487 1.00 45.95 O ATOM 276 N THR 31 7.625 33.180 13.480 1.00 36.12 N ATOM 278 CA THR 31 8.234 32.142 12.642 1.00 40.90 C ATOM 279 CB THR 31 7.539 30.761 12.833 1.00 41.15 C ATOM 280 OG1 THR 31 6.115 30.931 12.858 1.00 38.25 O ATOM 282 CG2 THR 31 8.000 30.102 14.117 1.00 47.93 C ATOM 283 C THR 31 8.062 32.656 11.201 1.00 36.71 C ATOM 284 O THR 31 7.647 33.806 11.011 1.00 32.60 O ATOM 285 N GLU 32 8.393 31.834 10.201 1.00 41.15 N ATOM 287 CA GLU 32 8.320 32.247 8.799 1.00 37.75 C ATOM 288 CB GLU 32 9.629 31.855 8.107 1.00 43.00 C ATOM 289 CG GLU 32 10.856 32.546 8.670 1.00 40.41 C ATOM 290 CD GLU 32 12.136 32.136 7.964 1.00 44.33 C ATOM 291 OE1 GLU 32 12.507 32.797 6.971 1.00 49.46 O ATOM 292 OE2 GLU 32 12.774 31.157 8.405 1.00 49.96 O ATOM 293 C GLU 32 7.111 31.830 7.937 1.00 36.65 C ATOM 294 O GLU 32 7.280 31.493 6.760 1.00 39.53 O ATOM 295 N ARG 33 5.896 31.873 8.501 1.00 33.30 N ATOM 297 CA ARG 33 4.669 31.547 7.741 1.00 31.43 C ATOM 298 CB ARG 33 4.001 30.266 8.288 1.00 32.23 C ATOM 299 CG ARG 33 4.841 28.981 8.150 1.00 37.82 C ATOM 300 CD ARG 33 5.711 28.629 9.387 1.00 41.49 C ATOM 301 NE ARG 33 4.916 28.354 10.588 1.00 36.85 N ATOM 303 CZ ARG 33 5.396 27.867 11.732 1.00 40.82 C ATOM 304 NH1 ARG 33 4.572 27.661 12.751 1.00 46.92 N ATOM 307 NH2 ARG 33 6.688 27.582 11.873 1.00 47.36 N ATOM 310 C ARG 33 3.722 32.770 7.798 1.00 28.73 C ATOM 311 O ARG 33 2.856 32.846 8.679 1.00 28.36 O ATOM 312 N PRO 34 3.829 33.708 6.812 1.00 29.80 N ATOM 313 CD PRO 34 5.034 33.971 5.999 1.00 31.04 C ATOM 314 CA PRO 34 2.988 34.913 6.766 1.00 31.23 C ATOM 315 CB PRO 34 3.715 35.790 5.745 1.00 35.23 C ATOM 316 CG PRO 34 5.071 35.472 5.973 1.00 35.80 C ATOM 317 C PRO 34 1.486 34.899 6.469 1.00 30.47 C ATOM 318 O PRO 34 1.066 34.580 5.353 1.00 30.29 O ATOM 319 N PHE 35 0.696 35.124 7.527 1.00 30.20 N ATOM 321 CA PHE 35 -0.759 35.308 7.434 1.00 31.53 C ATOM 322 CB PHE 35 -1.459 34.078 8.058 1.00 30.90 C ATOM 323 CG PHE 35 -2.972 34.039 7.939 1.00 34.56 C ATOM 324 CD1 PHE 35 -3.808 34.873 8.728 1.00 39.45 C ATOM 325 CD2 PHE 35 -3.585 33.078 7.105 1.00 37.40 C ATOM 326 CE1 PHE 35 -5.225 34.746 8.688 1.00 45.23 C ATOM 327 CE2 PHE 35 -5.000 32.936 7.056 1.00 43.56 C ATOM 328 CZ PHE 35 -5.821 33.772 7.851 1.00 45.85 C ATOM 329 C PHE 35 -0.820 36.487 8.407 1.00 33.64 C ATOM 330 O PHE 35 -1.149 36.311 9.581 1.00 33.69 O ATOM 331 N TRP 36 -0.552 37.686 7.901 1.00 35.36 N ATOM 333 CA TRP 36 -0.574 38.898 8.711 1.00 35.61 C ATOM 334 CB TRP 36 0.781 39.228 9.352 1.00 38.03 C ATOM 335 CG TRP 36 1.042 38.551 10.717 1.00 38.77 C ATOM 336 CD2 TRP 36 1.853 37.382 10.967 1.00 37.82 C ATOM 337 CE2 TRP 36 1.874 37.181 12.375 1.00 36.05 C ATOM 338 CE3 TRP 36 2.568 36.483 10.141 1.00 36.12 C ATOM 339 CD1 TRP 36 0.619 38.986 11.954 1.00 39.85 C ATOM 340 NE1 TRP 36 1.116 38.171 12.942 1.00 38.77 N ATOM 342 CZ2 TRP 36 2.582 36.115 12.984 1.00 33.41 C ATOM 343 CZ3 TRP 36 3.277 35.417 10.747 1.00 33.53 C ATOM 344 CH2 TRP 36 3.274 35.248 12.159 1.00 32.71 C ATOM 345 C TRP 36 -1.185 40.116 8.100 1.00 37.82 C ATOM 346 O TRP 36 -1.414 40.196 6.893 1.00 41.66 O ATOM 347 N ILE 37 -1.478 41.051 8.990 1.00 36.38 N ATOM 349 CA ILE 37 -2.077 42.323 8.672 1.00 36.58 C ATOM 350 CB ILE 37 -3.315 42.474 9.606 1.00 40.16 C ATOM 351 CG2 ILE 37 -4.554 41.883 8.914 1.00 49.22 C ATOM 352 CG1 ILE 37 -3.031 41.803 10.976 1.00 43.56 C ATOM 353 CD1 ILE 37 -3.707 42.471 12.182 1.00 49.71 C ATOM 354 C ILE 37 -1.117 43.496 8.940 1.00 33.41 C ATOM 355 O ILE 37 -1.548 44.649 8.883 1.00 32.50 O ATOM 356 N SER 38 0.192 43.242 9.074 1.00 35.86 N ATOM 358 CA SER 38 1.043 44.361 9.484 1.00 37.26 C ATOM 359 CB SER 38 1.602 43.955 10.863 1.00 45.64 C ATOM 360 OG SER 38 2.543 44.876 11.379 1.00 47.59 O ATOM 362 C SER 38 2.119 45.250 8.853 1.00 35.73 C ATOM 363 O SER 38 2.069 46.443 9.164 1.00 33.41 O ATOM 364 N SER 39 3.040 44.832 7.970 1.00 39.30 N ATOM 366 CA SER 39 4.010 45.894 7.639 1.00 37.61 C ATOM 367 CB SER 39 5.260 45.636 8.488 1.00 43.00 C ATOM 368 OG SER 39 4.931 45.549 9.858 1.00 47.03 O ATOM 370 C SER 39 4.532 46.594 6.387 1.00 37.89 C ATOM 371 O SER 39 4.358 47.810 6.278 1.00 42.28 O ATOM 372 N PHE 40 5.119 45.866 5.433 1.00 38.47 N ATOM 374 CA PHE 40 5.754 46.510 4.264 1.00 41.92 C ATOM 375 CB PHE 40 7.286 46.568 4.467 1.00 46.49 C ATOM 376 CG PHE 40 7.738 46.998 5.855 1.00 43.28 C ATOM 377 CD1 PHE 40 8.337 46.063 6.728 1.00 45.03 C ATOM 378 CD2 PHE 40 7.626 48.346 6.284 1.00 48.04 C ATOM 379 CE1 PHE 40 8.818 46.454 8.008 1.00 48.16 C ATOM 380 CE2 PHE 40 8.102 48.752 7.561 1.00 48.04 C ATOM 381 CZ PHE 40 8.700 47.803 8.425 1.00 48.74 C ATOM 382 C PHE 40 5.526 46.057 2.840 1.00 42.01 C ATOM 383 O PHE 40 5.999 46.712 1.904 1.00 47.93 O ATOM 384 N ILE 41 4.754 44.995 2.657 1.00 37.61 N ATOM 386 CA ILE 41 4.657 44.358 1.342 1.00 40.24 C ATOM 387 CB ILE 41 4.335 42.833 1.537 1.00 39.45 C ATOM 388 CG2 ILE 41 4.943 41.965 0.392 1.00 47.48 C ATOM 389 CG1 ILE 41 4.763 42.374 2.958 1.00 41.92 C ATOM 390 CD1 ILE 41 6.302 42.219 3.307 1.00 47.03 C ATOM 391 C ILE 41 3.875 44.987 0.193 1.00 40.65 C ATOM 392 O ILE 41 3.044 44.334 -0.450 1.00 41.58 O ATOM 393 N GLY 42 4.200 46.258 -0.075 1.00 44.33 N ATOM 395 CA GLY 42 3.629 47.014 -1.181 1.00 46.81 C ATOM 396 C GLY 42 2.237 46.588 -1.573 1.00 43.00 C ATOM 397 O GLY 42 1.948 46.295 -2.734 1.00 48.98 O ATOM 398 N ARG 43 1.435 46.443 -0.530 1.00 39.69 N ATOM 400 CA ARG 43 0.062 46.002 -0.564 1.00 39.53 C ATOM 401 CB ARG 43 -0.307 45.190 0.675 1.00 37.96 C ATOM 402 CG ARG 43 -0.780 43.767 0.318 1.00 45.64 C ATOM 403 CD ARG 43 -1.151 42.953 1.557 1.00 46.59 C ATOM 404 NE ARG 43 0.013 42.605 2.380 1.00 40.49 N ATOM 406 CZ ARG 43 -0.028 41.901 3.511 1.00 40.00 C ATOM 407 NH1 ARG 43 -1.180 41.444 3.996 1.00 44.33 N ATOM 410 NH2 ARG 43 1.096 41.650 4.167 1.00 39.30 N ATOM 413 C ARG 43 -1.022 46.968 -0.986 1.00 42.28 C ATOM 414 O ARG 43 -0.753 48.092 -1.427 1.00 43.94 O ATOM 415 N SER 44 -2.252 46.485 -0.827 1.00 42.73 N ATOM 417 CA SER 44 -3.485 47.147 -1.205 1.00 44.23 C ATOM 418 CB SER 44 -4.606 46.155 -0.987 1.00 49.10 C ATOM 419 OG SER 44 -4.391 45.483 0.246 1.00 46.59 O ATOM 421 C SER 44 -3.690 48.289 -0.245 1.00 39.15 C ATOM 422 O SER 44 -3.480 48.182 0.972 1.00 38.03 O ATOM 423 N LYS 45 -4.093 49.393 -0.858 1.00 42.91 N ATOM 425 CA LYS 45 -4.240 50.663 -0.193 1.00 38.92 C ATOM 426 CG LYS 45 -2.527 51.430 -1.959 1.00 42.91 C ATOM 427 CD LYS 45 -2.175 52.546 -2.937 1.00 48.98 C ATOM 428 CE LYS 45 -0.888 52.255 -3.706 1.00 49.46 C ATOM 429 NZ LYS 45 0.338 52.292 -2.855 1.00 50.33 N ATOM 433 C LYS 45 -5.593 50.986 0.458 1.00 38.47 C ATOM 434 O LYS 45 -5.816 52.127 0.872 1.00 38.32 O ATOM 435 CB LYS 45 -3.820 51.743 -1.199 1.00 44.83 C TER END