####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 44 ( 344), selected 44 , name T0953s2TS407_1-D1 # Molecule2: number of CA atoms 44 ( 344), selected 44 , name T0953s2-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS407_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 17 - 42 4.93 12.98 LONGEST_CONTINUOUS_SEGMENT: 26 18 - 43 4.96 13.44 LONGEST_CONTINUOUS_SEGMENT: 26 19 - 44 4.87 13.99 LCS_AVERAGE: 54.34 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 20 - 34 1.80 14.14 LCS_AVERAGE: 23.61 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 10 - 19 0.98 20.39 LONGEST_CONTINUOUS_SEGMENT: 10 20 - 29 0.81 13.34 LCS_AVERAGE: 15.81 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 44 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 2 A 2 3 3 10 3 3 3 3 3 4 4 6 8 9 9 11 12 13 16 18 18 19 20 21 LCS_GDT V 3 V 3 4 4 10 3 3 4 4 4 4 5 6 8 9 9 9 10 10 10 10 13 15 17 17 LCS_GDT Q 4 Q 4 4 7 20 3 3 4 4 4 7 7 7 8 9 11 11 15 18 20 21 24 26 28 32 LCS_GDT G 5 G 5 4 7 22 2 3 5 6 6 8 9 11 13 15 18 19 20 21 23 25 26 28 30 32 LCS_GDT P 6 P 6 4 7 22 2 3 5 6 6 8 9 10 12 14 18 19 20 21 26 27 29 30 31 32 LCS_GDT W 7 W 7 3 7 22 2 3 5 6 6 8 9 12 13 15 18 20 22 24 26 28 29 30 31 32 LCS_GDT V 8 V 8 3 7 22 3 3 5 6 6 8 9 12 13 15 18 19 22 24 26 28 29 30 31 32 LCS_GDT G 9 G 9 3 9 22 3 3 5 6 8 9 12 12 13 15 18 19 22 23 25 27 29 30 31 32 LCS_GDT S 10 S 10 10 10 22 5 8 8 10 10 10 12 12 12 17 19 21 23 24 26 28 29 30 31 32 LCS_GDT S 11 S 11 10 10 22 6 8 9 10 10 10 12 12 13 15 18 19 22 24 26 28 29 30 31 32 LCS_GDT Y 12 Y 12 10 10 22 6 8 9 10 10 10 12 12 13 15 18 19 22 24 26 28 29 30 31 32 LCS_GDT V 13 V 13 10 10 22 6 8 9 10 10 10 12 15 18 20 21 23 26 27 27 28 29 30 31 32 LCS_GDT A 14 A 14 10 10 22 6 8 9 10 10 10 12 12 18 20 21 23 26 27 27 28 29 30 31 32 LCS_GDT E 15 E 15 10 10 22 6 8 9 10 10 10 12 12 13 15 18 19 21 21 24 26 26 28 30 32 LCS_GDT T 16 T 16 10 10 24 6 8 9 10 10 10 12 12 13 15 18 19 21 21 24 26 26 27 29 32 LCS_GDT G 17 G 17 10 10 26 4 8 9 10 10 10 12 12 13 15 18 21 26 27 27 28 28 28 29 32 LCS_GDT Q 18 Q 18 10 10 26 3 3 9 10 10 10 12 12 13 17 19 23 26 27 27 28 29 30 31 32 LCS_GDT N 19 N 19 10 12 26 3 3 9 10 10 10 14 18 20 20 21 23 26 27 27 28 29 30 31 32 LCS_GDT W 20 W 20 10 15 26 6 9 11 12 15 17 19 19 20 20 21 22 26 27 27 28 29 30 31 32 LCS_GDT A 21 A 21 10 15 26 6 9 11 12 15 17 19 19 20 20 21 23 26 27 27 28 29 30 31 32 LCS_GDT S 22 S 22 10 15 26 6 9 11 12 15 17 19 19 20 20 21 23 26 27 27 28 29 30 31 32 LCS_GDT L 23 L 23 10 15 26 6 9 11 12 15 17 19 19 20 20 21 23 26 27 27 28 29 30 31 32 LCS_GDT A 24 A 24 10 15 26 6 9 11 12 15 17 19 19 20 20 21 23 26 27 27 28 29 30 31 32 LCS_GDT A 25 A 25 10 15 26 6 9 11 12 15 17 19 19 20 20 21 23 26 27 27 28 29 30 31 32 LCS_GDT N 26 N 26 10 15 26 6 9 10 12 15 17 19 19 20 20 21 23 26 27 27 28 29 30 31 32 LCS_GDT E 27 E 27 10 15 26 3 9 10 12 15 17 19 19 20 20 21 23 26 27 27 28 29 30 31 32 LCS_GDT L 28 L 28 10 15 26 6 9 11 12 15 17 19 19 20 20 21 23 26 27 27 28 29 30 31 32 LCS_GDT R 29 R 29 10 15 26 3 7 10 12 15 17 19 19 20 20 21 23 26 27 27 28 29 30 31 32 LCS_GDT V 30 V 30 4 15 26 3 7 11 12 15 17 19 19 20 20 21 23 26 27 27 28 29 30 31 32 LCS_GDT T 31 T 31 4 15 26 5 8 11 12 15 17 19 19 20 20 21 23 26 27 27 28 29 30 31 32 LCS_GDT E 32 E 32 4 15 26 3 8 11 12 15 17 19 19 20 20 21 23 26 27 27 28 29 30 31 32 LCS_GDT R 33 R 33 4 15 26 3 4 5 8 12 17 19 19 20 20 21 23 26 27 27 28 29 30 31 32 LCS_GDT P 34 P 34 4 15 26 2 4 4 6 12 17 19 19 20 20 21 23 26 27 27 28 29 30 31 32 LCS_GDT F 35 F 35 6 8 26 3 4 7 7 10 16 19 19 20 20 21 23 26 27 27 28 29 30 31 32 LCS_GDT W 36 W 36 6 8 26 3 4 7 8 10 17 19 19 20 20 21 23 25 27 27 28 29 30 31 32 LCS_GDT I 37 I 37 6 8 26 5 8 11 12 15 17 19 19 20 20 21 23 26 27 27 28 29 30 31 32 LCS_GDT S 38 S 38 6 8 26 4 5 7 11 15 17 19 19 20 20 21 23 26 27 27 28 29 30 31 31 LCS_GDT S 39 S 39 6 8 26 4 5 7 7 7 8 11 12 18 20 21 23 26 27 27 28 29 29 31 31 LCS_GDT F 40 F 40 6 8 26 4 5 7 7 7 8 9 9 13 16 18 22 26 27 27 28 28 28 29 30 LCS_GDT I 41 I 41 6 8 26 4 5 7 7 9 10 13 14 17 18 20 22 26 27 27 28 28 28 29 30 LCS_GDT G 42 G 42 4 8 26 3 3 5 7 9 10 11 14 15 17 18 22 23 24 25 28 28 28 28 29 LCS_GDT R 43 R 43 4 5 26 3 3 5 6 9 10 11 12 13 15 18 22 23 23 25 26 26 27 28 29 LCS_GDT S 44 S 44 4 5 26 3 3 5 6 9 10 11 12 13 16 18 22 23 23 25 26 26 27 28 28 LCS_GDT K 45 K 45 4 5 18 0 3 5 6 9 10 11 12 13 14 15 18 19 19 21 22 23 25 26 26 LCS_AVERAGE LCS_A: 31.25 ( 15.81 23.61 54.34 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 9 11 12 15 17 19 19 20 20 21 23 26 27 27 28 29 30 31 32 GDT PERCENT_AT 13.64 20.45 25.00 27.27 34.09 38.64 43.18 43.18 45.45 45.45 47.73 52.27 59.09 61.36 61.36 63.64 65.91 68.18 70.45 72.73 GDT RMS_LOCAL 0.19 0.62 0.92 1.11 1.64 1.90 2.23 2.23 2.65 2.65 3.16 4.06 4.85 4.88 4.88 5.22 5.47 5.83 5.95 6.68 GDT RMS_ALL_AT 13.58 13.63 14.33 14.35 13.66 13.68 13.50 13.50 12.93 12.93 12.18 11.47 12.08 11.98 11.98 12.30 10.99 11.33 11.09 11.89 # Checking swapping # possible swapping detected: E 15 E 15 # possible swapping detected: F 35 F 35 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA A 2 A 2 30.054 0 0.551 0.595 32.175 0.000 0.000 - LGA V 3 V 3 28.811 0 0.553 1.340 30.508 0.000 0.000 27.188 LGA Q 4 Q 4 26.548 0 0.608 0.608 26.666 0.000 0.000 21.853 LGA G 5 G 5 24.888 0 0.322 0.322 25.726 0.000 0.000 - LGA P 6 P 6 21.882 0 0.055 0.411 24.806 0.000 0.000 23.898 LGA W 7 W 7 17.224 0 0.376 0.394 21.215 0.000 0.000 16.752 LGA V 8 V 8 15.013 0 0.650 0.727 15.984 0.000 0.000 14.218 LGA G 9 G 9 12.966 0 0.288 0.288 13.887 0.000 0.000 - LGA S 10 S 10 14.896 0 0.663 0.834 19.084 0.000 0.000 19.084 LGA S 11 S 11 19.111 0 0.048 0.667 23.274 0.000 0.000 23.274 LGA Y 12 Y 12 16.781 0 0.088 1.350 17.457 0.000 0.000 14.046 LGA V 13 V 13 10.993 0 0.056 1.050 12.870 0.000 0.000 10.301 LGA A 14 A 14 13.824 0 0.030 0.030 16.532 0.000 0.000 - LGA E 15 E 15 19.491 0 0.053 1.423 26.697 0.000 0.000 25.982 LGA T 16 T 16 17.645 0 0.154 0.224 17.957 0.000 0.000 13.824 LGA G 17 G 17 14.315 0 0.237 0.237 14.970 0.000 0.000 - LGA Q 18 Q 18 11.661 0 0.647 1.324 18.309 0.000 0.000 16.492 LGA N 19 N 19 7.529 0 0.052 0.256 12.478 0.455 0.227 11.589 LGA W 20 W 20 0.916 0 0.613 1.182 10.000 57.727 17.922 10.000 LGA A 21 A 21 1.302 0 0.043 0.042 1.566 58.182 59.636 - LGA S 22 S 22 1.758 0 0.042 0.641 3.470 50.909 43.333 3.470 LGA L 23 L 23 1.474 0 0.038 0.349 1.958 65.455 63.864 1.958 LGA A 24 A 24 0.607 0 0.011 0.015 0.937 81.818 85.455 - LGA A 25 A 25 1.286 0 0.021 0.022 1.915 62.273 60.000 - LGA N 26 N 26 2.704 0 0.032 0.938 3.555 30.000 32.500 2.755 LGA E 27 E 27 2.801 0 0.101 0.913 4.030 32.727 22.424 3.474 LGA L 28 L 28 1.282 0 0.268 0.403 2.432 62.727 52.045 2.372 LGA R 29 R 29 2.027 0 0.512 0.878 8.469 66.818 25.289 6.993 LGA V 30 V 30 1.557 0 0.144 0.977 2.982 58.182 48.052 2.982 LGA T 31 T 31 1.662 0 0.028 1.080 3.709 51.364 43.636 3.709 LGA E 32 E 32 2.265 0 0.682 1.200 4.336 38.636 23.838 4.336 LGA R 33 R 33 2.926 0 0.354 1.263 6.639 19.091 18.182 5.219 LGA P 34 P 34 3.204 0 0.694 0.659 7.824 20.000 11.429 7.824 LGA F 35 F 35 3.769 0 0.547 1.479 7.346 16.364 6.446 6.904 LGA W 36 W 36 3.561 0 0.100 0.230 11.890 27.727 7.922 11.525 LGA I 37 I 37 2.038 0 0.115 0.329 7.944 41.364 21.591 7.944 LGA S 38 S 38 1.968 0 0.096 0.150 5.791 33.636 24.242 5.791 LGA S 39 S 39 8.448 0 0.162 0.557 12.071 0.000 0.000 10.436 LGA F 40 F 40 11.283 0 0.051 1.442 14.451 0.000 0.000 9.555 LGA I 41 I 41 10.619 0 0.098 1.126 13.003 0.000 0.000 7.331 LGA G 42 G 42 14.259 0 0.634 0.634 14.259 0.000 0.000 - LGA R 43 R 43 15.152 0 0.188 1.391 17.928 0.000 0.000 17.928 LGA S 44 S 44 15.880 0 0.587 0.932 16.972 0.000 0.000 14.036 LGA K 45 K 45 20.686 0 0.436 0.859 31.912 0.000 0.000 31.912 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 44 176 176 100.00 344 344 100.00 44 35 SUMMARY(RMSD_GDC): 10.529 10.388 10.867 19.897 15.183 5.610 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 44 44 4.0 19 2.23 38.636 36.214 0.814 LGA_LOCAL RMSD: 2.234 Number of atoms: 19 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 13.497 Number of assigned atoms: 44 Std_ASGN_ATOMS RMSD: 10.529 Standard rmsd on all 44 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.596298 * X + -0.793359 * Y + -0.122517 * Z + 9.462092 Y_new = 0.756549 * X + 0.606423 * Y + -0.244713 * Z + 34.193939 Z_new = 0.268442 * X + 0.053231 * Y + 0.961824 * Z + 8.060059 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.903304 -0.271776 0.055288 [DEG: 51.7555 -15.5716 3.1678 ] ZXZ: -0.464173 0.277206 1.375038 [DEG: -26.5952 15.8827 78.7839 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0953s2TS407_1-D1 REMARK 2: T0953s2-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0953s2TS407_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 44 44 4.0 19 2.23 36.214 10.53 REMARK ---------------------------------------------------------- MOLECULE T0953s2TS407_1-D1 PFRMAT TS TARGET T0953s2 MODEL 1 PARENT N/A ATOM 12 N ALA 2 -1.046 12.208 -2.218 1.00 4.55 N ATOM 14 CA ALA 2 -1.126 12.455 -0.752 1.00 4.55 C ATOM 15 CB ALA 2 -2.419 11.847 -0.145 1.00 4.55 C ATOM 16 C ALA 2 0.107 12.054 0.081 1.00 4.55 C ATOM 17 O ALA 2 0.731 12.919 0.705 1.00 4.55 O ATOM 18 N VAL 3 0.454 10.752 0.053 1.00 4.45 N ATOM 20 CA VAL 3 1.591 10.096 0.761 1.00 4.45 C ATOM 21 CB VAL 3 2.901 9.990 -0.175 1.00 4.45 C ATOM 22 CG1 VAL 3 3.538 11.366 -0.449 1.00 4.45 C ATOM 23 CG2 VAL 3 3.923 8.982 0.376 1.00 4.45 C ATOM 24 C VAL 3 1.891 10.535 2.231 1.00 4.45 C ATOM 25 O VAL 3 1.738 9.724 3.153 1.00 4.45 O ATOM 26 N GLN 4 2.308 11.796 2.419 1.00 4.04 N ATOM 28 CA GLN 4 2.634 12.369 3.739 1.00 4.04 C ATOM 29 CB GLN 4 4.051 12.997 3.745 1.00 4.04 C ATOM 30 CG GLN 4 4.412 13.930 2.568 1.00 4.04 C ATOM 31 CD GLN 4 5.811 14.505 2.687 1.00 4.04 C ATOM 32 OE1 GLN 4 6.003 15.592 3.232 1.00 4.04 O ATOM 33 NE2 GLN 4 6.797 13.776 2.175 1.00 4.04 N ATOM 36 C GLN 4 1.579 13.359 4.269 1.00 4.04 C ATOM 37 O GLN 4 1.127 13.230 5.412 1.00 4.04 O ATOM 38 N GLY 5 1.203 14.331 3.431 1.00 3.55 N ATOM 40 CA GLY 5 0.215 15.335 3.802 1.00 3.55 C ATOM 41 C GLY 5 0.395 16.644 3.039 1.00 3.55 C ATOM 42 O GLY 5 1.172 17.483 3.510 1.00 3.55 O ATOM 43 N PRO 6 -0.283 16.865 1.870 1.00 2.54 N ATOM 44 CD PRO 6 -1.091 15.881 1.115 1.00 2.54 C ATOM 45 CA PRO 6 -0.161 18.106 1.077 1.00 2.54 C ATOM 46 CB PRO 6 -1.009 17.804 -0.162 1.00 2.54 C ATOM 47 CG PRO 6 -0.890 16.330 -0.308 1.00 2.54 C ATOM 48 C PRO 6 -0.655 19.392 1.777 1.00 2.54 C ATOM 49 O PRO 6 -0.246 20.500 1.404 1.00 2.54 O ATOM 50 N TRP 7 -1.515 19.219 2.792 1.00 2.70 N ATOM 52 CA TRP 7 -2.102 20.321 3.579 1.00 2.70 C ATOM 53 CB TRP 7 -3.622 20.102 3.768 1.00 2.70 C ATOM 54 CG TRP 7 -4.457 19.925 2.474 1.00 2.70 C ATOM 55 CD2 TRP 7 -4.982 20.960 1.609 1.00 2.70 C ATOM 56 CE2 TRP 7 -5.714 20.308 0.575 1.00 2.70 C ATOM 57 CE3 TRP 7 -4.905 22.371 1.604 1.00 2.70 C ATOM 58 CD1 TRP 7 -4.887 18.733 1.935 1.00 2.70 C ATOM 59 NE1 TRP 7 -5.635 18.960 0.805 1.00 2.70 N ATOM 61 CZ2 TRP 7 -6.370 21.019 -0.459 1.00 2.70 C ATOM 62 CZ3 TRP 7 -5.561 23.086 0.570 1.00 2.70 C ATOM 63 CH2 TRP 7 -6.284 22.399 -0.446 1.00 2.70 C ATOM 64 C TRP 7 -1.422 20.475 4.951 1.00 2.70 C ATOM 65 O TRP 7 -1.050 19.472 5.575 1.00 2.70 O ATOM 66 N VAL 8 -1.257 21.732 5.394 1.00 2.50 N ATOM 68 CA VAL 8 -0.624 22.084 6.684 1.00 2.50 C ATOM 69 CB VAL 8 0.553 23.138 6.498 1.00 2.50 C ATOM 70 CG1 VAL 8 1.398 23.271 7.775 1.00 2.50 C ATOM 71 CG2 VAL 8 1.459 22.730 5.338 1.00 2.50 C ATOM 72 C VAL 8 -1.714 22.624 7.640 1.00 2.50 C ATOM 73 O VAL 8 -2.492 23.515 7.270 1.00 2.50 O ATOM 74 N GLY 9 -1.782 22.032 8.839 1.00 2.63 N ATOM 76 CA GLY 9 -2.755 22.420 9.859 1.00 2.63 C ATOM 77 C GLY 9 -4.092 21.701 9.740 1.00 2.63 C ATOM 78 O GLY 9 -4.135 20.465 9.742 1.00 2.63 O ATOM 79 N SER 10 -5.172 22.487 9.642 1.00 2.66 N ATOM 81 CA SER 10 -6.551 21.992 9.502 1.00 2.66 C ATOM 82 CB SER 10 -7.465 22.647 10.553 1.00 2.66 C ATOM 83 OG SER 10 -8.763 22.074 10.552 1.00 2.66 O ATOM 85 C SER 10 -7.047 22.297 8.074 1.00 2.66 C ATOM 86 O SER 10 -6.375 23.030 7.337 1.00 2.66 O ATOM 87 N SER 11 -8.211 21.745 7.701 1.00 2.79 N ATOM 89 CA SER 11 -8.828 21.914 6.368 1.00 2.79 C ATOM 90 OG SER 11 -9.488 19.571 6.282 1.00 2.79 O ATOM 92 C SER 11 -9.333 23.331 6.025 1.00 2.79 C ATOM 93 O SER 11 -9.090 23.814 4.913 1.00 2.79 O ATOM 94 CB SER 11 -9.964 20.903 6.180 1.00 2.79 C ATOM 95 N TYR 12 -9.992 23.992 6.990 1.00 2.77 N ATOM 97 CA TYR 12 -10.555 25.351 6.832 1.00 2.77 C ATOM 98 CB TYR 12 -11.469 25.692 8.038 1.00 2.77 C ATOM 99 CG TYR 12 -12.599 26.709 7.803 1.00 2.77 C ATOM 100 CD1 TYR 12 -13.889 26.289 7.392 1.00 2.77 C ATOM 101 CE1 TYR 12 -14.946 27.223 7.205 1.00 2.77 C ATOM 102 CD2 TYR 12 -12.395 28.094 8.023 1.00 2.77 C ATOM 103 CE2 TYR 12 -13.446 29.034 7.839 1.00 2.77 C ATOM 104 CZ TYR 12 -14.714 28.589 7.432 1.00 2.77 C ATOM 105 OH TYR 12 -15.732 29.497 7.253 1.00 2.77 O ATOM 107 C TYR 12 -9.472 26.436 6.680 1.00 2.77 C ATOM 108 O TYR 12 -9.550 27.258 5.761 1.00 2.77 O ATOM 109 N VAL 13 -8.450 26.383 7.548 1.00 2.56 N ATOM 111 CA VAL 13 -7.321 27.336 7.567 1.00 2.56 C ATOM 112 CB VAL 13 -6.494 27.251 8.906 1.00 2.56 C ATOM 113 CG1 VAL 13 -7.293 27.858 10.051 1.00 2.56 C ATOM 114 CG2 VAL 13 -6.100 25.801 9.251 1.00 2.56 C ATOM 115 C VAL 13 -6.405 27.222 6.328 1.00 2.56 C ATOM 116 O VAL 13 -5.964 28.242 5.783 1.00 2.56 O ATOM 117 N ALA 14 -6.147 25.975 5.902 1.00 2.40 N ATOM 119 CA ALA 14 -5.316 25.649 4.729 1.00 2.40 C ATOM 120 CB ALA 14 -4.970 24.164 4.726 1.00 2.40 C ATOM 121 C ALA 14 -5.971 26.050 3.394 1.00 2.40 C ATOM 122 O ALA 14 -5.309 26.642 2.535 1.00 2.40 O ATOM 123 N GLU 15 -7.263 25.717 3.236 1.00 2.30 N ATOM 125 CA GLU 15 -8.059 26.023 2.027 1.00 2.30 C ATOM 126 CB GLU 15 -9.344 25.183 1.992 1.00 2.30 C ATOM 127 CG GLU 15 -9.126 23.703 1.686 1.00 2.30 C ATOM 128 CD GLU 15 -10.422 22.913 1.662 1.00 2.30 C ATOM 129 OE1 GLU 15 -10.825 22.396 2.726 1.00 2.30 O ATOM 130 OE2 GLU 15 -11.038 22.808 0.580 1.00 2.30 O ATOM 131 C GLU 15 -8.399 27.510 1.793 1.00 2.30 C ATOM 132 O GLU 15 -8.223 28.007 0.675 1.00 2.30 O ATOM 133 N THR 16 -8.878 28.199 2.841 1.00 2.05 N ATOM 135 CA THR 16 -9.253 29.633 2.791 1.00 2.05 C ATOM 136 CB THR 16 -10.141 30.052 4.004 1.00 2.05 C ATOM 137 OG1 THR 16 -9.456 29.768 5.230 1.00 2.05 O ATOM 139 CG2 THR 16 -11.480 29.319 3.982 1.00 2.05 C ATOM 140 C THR 16 -8.075 30.618 2.652 1.00 2.05 C ATOM 141 O THR 16 -8.124 31.535 1.824 1.00 2.05 O ATOM 142 N GLY 17 -7.026 30.401 3.458 1.00 2.14 N ATOM 144 CA GLY 17 -5.841 31.253 3.460 1.00 2.14 C ATOM 145 C GLY 17 -5.937 32.384 4.477 1.00 2.14 C ATOM 146 O GLY 17 -4.962 32.680 5.176 1.00 2.14 O ATOM 147 N GLN 18 -7.124 33.001 4.541 1.00 2.36 N ATOM 149 CA GLN 18 -7.460 34.122 5.441 1.00 2.36 C ATOM 150 CB GLN 18 -8.783 34.776 5.016 1.00 2.36 C ATOM 151 CG GLN 18 -8.739 35.502 3.674 1.00 2.36 C ATOM 152 CD GLN 18 -10.071 36.127 3.307 1.00 2.36 C ATOM 153 OE1 GLN 18 -10.902 35.501 2.648 1.00 2.36 O ATOM 154 NE2 GLN 18 -10.280 37.370 3.730 1.00 2.36 N ATOM 157 C GLN 18 -7.525 33.763 6.937 1.00 2.36 C ATOM 158 O GLN 18 -7.097 34.560 7.781 1.00 2.36 O ATOM 159 N ASN 19 -8.043 32.563 7.245 1.00 2.12 N ATOM 161 CA ASN 19 -8.196 32.045 8.622 1.00 2.12 C ATOM 162 CB ASN 19 -9.100 30.802 8.634 1.00 2.12 C ATOM 163 CG ASN 19 -10.561 31.130 8.348 1.00 2.12 C ATOM 164 OD1 ASN 19 -10.994 31.155 7.194 1.00 2.12 O ATOM 165 ND2 ASN 19 -11.332 31.369 9.407 1.00 2.12 N ATOM 168 C ASN 19 -6.874 31.745 9.351 1.00 2.12 C ATOM 169 O ASN 19 -6.732 32.085 10.531 1.00 2.12 O ATOM 170 N TRP 20 -5.910 31.148 8.631 1.00 2.00 N ATOM 172 CA TRP 20 -4.571 30.798 9.152 1.00 2.00 C ATOM 173 CB TRP 20 -3.827 29.892 8.134 1.00 2.00 C ATOM 174 CG TRP 20 -2.425 29.342 8.548 1.00 2.00 C ATOM 175 CD2 TRP 20 -2.132 28.209 9.397 1.00 2.00 C ATOM 176 CE2 TRP 20 -0.715 28.084 9.451 1.00 2.00 C ATOM 177 CE3 TRP 20 -2.925 27.286 10.118 1.00 2.00 C ATOM 178 CD1 TRP 20 -1.207 29.833 8.143 1.00 2.00 C ATOM 179 NE1 TRP 20 -0.186 29.084 8.679 1.00 2.00 N ATOM 181 CZ2 TRP 20 -0.065 27.071 10.198 1.00 2.00 C ATOM 182 CZ3 TRP 20 -2.278 26.271 10.867 1.00 2.00 C ATOM 183 CH2 TRP 20 -0.858 26.178 10.896 1.00 2.00 C ATOM 184 C TRP 20 -3.766 32.083 9.450 1.00 2.00 C ATOM 185 O TRP 20 -3.099 32.174 10.489 1.00 2.00 O ATOM 186 N ALA 21 -3.870 33.062 8.538 1.00 2.21 N ATOM 188 CA ALA 21 -3.198 34.373 8.630 1.00 2.21 C ATOM 189 CB ALA 21 -3.315 35.113 7.307 1.00 2.21 C ATOM 190 C ALA 21 -3.766 35.231 9.774 1.00 2.21 C ATOM 191 O ALA 21 -3.006 35.892 10.493 1.00 2.21 O ATOM 192 N SER 22 -5.097 35.181 9.942 1.00 2.57 N ATOM 194 CA SER 22 -5.841 35.918 10.984 1.00 2.57 C ATOM 195 CB SER 22 -7.352 35.857 10.709 1.00 2.57 C ATOM 196 OG SER 22 -8.082 36.694 11.591 1.00 2.57 O ATOM 198 C SER 22 -5.531 35.393 12.399 1.00 2.57 C ATOM 199 O SER 22 -5.244 36.191 13.298 1.00 2.57 O ATOM 200 N LEU 23 -5.530 34.059 12.560 1.00 2.62 N ATOM 202 CA LEU 23 -5.248 33.377 13.842 1.00 2.62 C ATOM 203 CB LEU 23 -5.599 31.876 13.765 1.00 2.62 C ATOM 204 CG LEU 23 -7.056 31.371 13.770 1.00 2.62 C ATOM 205 CD1 LEU 23 -7.130 30.087 12.962 1.00 2.62 C ATOM 206 CD2 LEU 23 -7.605 31.136 15.192 1.00 2.62 C ATOM 207 C LEU 23 -3.793 33.556 14.297 1.00 2.62 C ATOM 208 O LEU 23 -3.540 33.796 15.484 1.00 2.62 O ATOM 209 N ALA 24 -2.857 33.476 13.340 1.00 2.50 N ATOM 211 CA ALA 24 -1.411 33.644 13.573 1.00 2.50 C ATOM 212 CB ALA 24 -0.626 33.239 12.330 1.00 2.50 C ATOM 213 C ALA 24 -1.084 35.097 13.959 1.00 2.50 C ATOM 214 O ALA 24 -0.264 35.334 14.854 1.00 2.50 O ATOM 215 N ALA 25 -1.784 36.045 13.314 1.00 2.39 N ATOM 217 CA ALA 25 -1.627 37.495 13.539 1.00 2.39 C ATOM 218 CB ALA 25 -2.357 38.281 12.453 1.00 2.39 C ATOM 219 C ALA 25 -2.104 37.942 14.930 1.00 2.39 C ATOM 220 O ALA 25 -1.388 38.685 15.611 1.00 2.39 O ATOM 221 N ASN 26 -3.295 37.479 15.347 1.00 2.64 N ATOM 223 CA ASN 26 -3.868 37.803 16.670 1.00 2.64 C ATOM 224 CB ASN 26 -5.394 37.537 16.748 1.00 2.64 C ATOM 225 CG ASN 26 -5.802 36.109 16.357 1.00 2.64 C ATOM 226 OD1 ASN 26 -6.600 35.921 15.441 1.00 2.64 O ATOM 227 ND2 ASN 26 -5.311 35.112 17.095 1.00 2.64 N ATOM 230 C ASN 26 -3.125 37.164 17.861 1.00 2.64 C ATOM 231 O ASN 26 -2.930 37.814 18.891 1.00 2.64 O ATOM 232 N GLU 27 -2.729 35.894 17.695 1.00 2.94 N ATOM 234 CA GLU 27 -2.004 35.105 18.712 1.00 2.94 C ATOM 235 CG GLU 27 -3.370 32.928 18.578 1.00 2.94 C ATOM 236 CD GLU 27 -3.345 31.455 18.212 1.00 2.94 C ATOM 237 OE1 GLU 27 -3.040 30.627 19.096 1.00 2.94 O ATOM 238 OE2 GLU 27 -3.633 31.127 17.042 1.00 2.94 O ATOM 239 C GLU 27 -0.559 35.539 19.019 1.00 2.94 C ATOM 240 O GLU 27 -0.186 35.633 20.193 1.00 2.94 O ATOM 241 CB GLU 27 -2.025 33.614 18.356 1.00 2.94 C ATOM 242 N LEU 28 0.236 35.800 17.970 1.00 2.84 N ATOM 244 CA LEU 28 1.653 36.205 18.092 1.00 2.84 C ATOM 245 CB LEU 28 2.390 36.024 16.747 1.00 2.84 C ATOM 246 CG LEU 28 2.744 34.638 16.167 1.00 2.84 C ATOM 247 CD1 LEU 28 2.830 34.752 14.654 1.00 2.84 C ATOM 248 CD2 LEU 28 4.060 34.065 16.729 1.00 2.84 C ATOM 249 C LEU 28 1.983 37.592 18.678 1.00 2.84 C ATOM 250 O LEU 28 2.860 37.689 19.544 1.00 2.84 O ATOM 251 N ARG 29 1.290 38.645 18.213 1.00 3.23 N ATOM 253 CA ARG 29 1.520 40.038 18.664 1.00 3.23 C ATOM 254 CB ARG 29 2.423 40.796 17.669 1.00 3.23 C ATOM 255 CG ARG 29 3.908 40.438 17.719 1.00 3.23 C ATOM 256 CD ARG 29 4.701 41.155 16.630 1.00 3.23 C ATOM 257 NE ARG 29 4.422 40.631 15.290 1.00 3.23 N ATOM 259 CZ ARG 29 4.307 41.367 14.184 1.00 3.23 C ATOM 260 NH1 ARG 29 4.054 40.771 13.026 1.00 3.23 N ATOM 263 NH2 ARG 29 4.433 42.691 14.219 1.00 3.23 N ATOM 266 C ARG 29 0.259 40.881 18.936 1.00 3.23 C ATOM 267 O ARG 29 -0.106 41.084 20.100 1.00 3.23 O ATOM 268 N VAL 30 -0.390 41.359 17.862 1.00 3.40 N ATOM 270 CA VAL 30 -1.594 42.221 17.900 1.00 3.40 C ATOM 271 CB VAL 30 -1.903 42.854 16.489 1.00 3.40 C ATOM 272 CG1 VAL 30 -0.957 44.015 16.225 1.00 3.40 C ATOM 273 CG2 VAL 30 -1.777 41.813 15.355 1.00 3.40 C ATOM 274 C VAL 30 -2.884 41.643 18.526 1.00 3.40 C ATOM 275 O VAL 30 -3.145 40.442 18.415 1.00 3.40 O ATOM 276 N THR 31 -3.647 42.512 19.207 1.00 4.01 N ATOM 278 CA THR 31 -4.915 42.166 19.882 1.00 4.01 C ATOM 279 CB THR 31 -4.853 42.510 21.437 1.00 4.01 C ATOM 280 OG1 THR 31 -6.127 42.263 22.048 1.00 4.01 O ATOM 282 CG2 THR 31 -4.416 43.968 21.704 1.00 4.01 C ATOM 283 C THR 31 -6.141 42.813 19.181 1.00 4.01 C ATOM 284 O THR 31 -7.290 42.440 19.459 1.00 4.01 O ATOM 285 N GLU 32 -5.866 43.731 18.242 1.00 4.79 N ATOM 287 CA GLU 32 -6.886 44.472 17.465 1.00 4.79 C ATOM 288 CB GLU 32 -6.316 45.819 16.994 1.00 4.79 C ATOM 289 CG GLU 32 -6.072 46.835 18.107 1.00 4.79 C ATOM 290 CD GLU 32 -5.511 48.148 17.590 1.00 4.79 C ATOM 291 OE1 GLU 32 -4.270 48.278 17.517 1.00 4.79 O ATOM 292 OE2 GLU 32 -6.310 49.049 17.260 1.00 4.79 O ATOM 293 C GLU 32 -7.449 43.685 16.262 1.00 4.79 C ATOM 294 O GLU 32 -8.468 44.080 15.676 1.00 4.79 O ATOM 295 N ARG 33 -6.801 42.552 15.941 1.00 4.46 N ATOM 297 CA ARG 33 -7.142 41.617 14.831 1.00 4.46 C ATOM 298 CB ARG 33 -8.432 40.814 15.134 1.00 4.46 C ATOM 299 CG ARG 33 -8.334 39.863 16.319 1.00 4.46 C ATOM 300 CD ARG 33 -9.642 39.119 16.541 1.00 4.46 C ATOM 301 NE ARG 33 -9.567 38.198 17.677 1.00 4.46 N ATOM 303 CZ ARG 33 -10.562 37.419 18.101 1.00 4.46 C ATOM 304 NH1 ARG 33 -10.371 36.625 19.145 1.00 4.46 N ATOM 307 NH2 ARG 33 -11.746 37.422 17.496 1.00 4.46 N ATOM 310 C ARG 33 -7.174 42.215 13.384 1.00 4.46 C ATOM 311 O ARG 33 -8.242 42.248 12.754 1.00 4.46 O ATOM 312 N PRO 34 -6.012 42.716 12.853 1.00 4.02 N ATOM 313 CD PRO 34 -4.757 43.038 13.577 1.00 4.02 C ATOM 314 CA PRO 34 -5.963 43.292 11.487 1.00 4.02 C ATOM 315 CB PRO 34 -4.636 44.069 11.492 1.00 4.02 C ATOM 316 CG PRO 34 -3.782 43.313 12.471 1.00 4.02 C ATOM 317 C PRO 34 -6.050 42.271 10.313 1.00 4.02 C ATOM 318 O PRO 34 -6.003 42.661 9.137 1.00 4.02 O ATOM 319 N PHE 35 -6.214 40.984 10.670 1.00 3.67 N ATOM 321 CA PHE 35 -6.317 39.808 9.761 1.00 3.67 C ATOM 322 CB PHE 35 -7.563 39.887 8.821 1.00 3.67 C ATOM 323 CG PHE 35 -8.908 39.937 9.544 1.00 3.67 C ATOM 324 CD1 PHE 35 -9.630 38.750 9.814 1.00 3.67 C ATOM 325 CD2 PHE 35 -9.482 41.175 9.926 1.00 3.67 C ATOM 326 CE1 PHE 35 -10.901 38.790 10.450 1.00 3.67 C ATOM 327 CE2 PHE 35 -10.752 41.232 10.563 1.00 3.67 C ATOM 328 CZ PHE 35 -11.463 40.036 10.825 1.00 3.67 C ATOM 329 C PHE 35 -5.043 39.482 8.951 1.00 3.67 C ATOM 330 O PHE 35 -4.482 38.390 9.104 1.00 3.67 O ATOM 331 N TRP 36 -4.606 40.426 8.104 1.00 4.03 N ATOM 333 CA TRP 36 -3.405 40.291 7.259 1.00 4.03 C ATOM 334 CB TRP 36 -3.791 40.187 5.761 1.00 4.03 C ATOM 335 CG TRP 36 -4.394 38.847 5.292 1.00 4.03 C ATOM 336 CD2 TRP 36 -3.686 37.707 4.754 1.00 4.03 C ATOM 337 CE2 TRP 36 -4.666 36.738 4.398 1.00 4.03 C ATOM 338 CE3 TRP 36 -2.321 37.410 4.534 1.00 4.03 C ATOM 339 CD1 TRP 36 -5.730 38.518 5.241 1.00 4.03 C ATOM 340 NE1 TRP 36 -5.893 37.263 4.708 1.00 4.03 N ATOM 342 CZ2 TRP 36 -4.328 35.484 3.832 1.00 4.03 C ATOM 343 CZ3 TRP 36 -1.980 36.156 3.968 1.00 4.03 C ATOM 344 CH2 TRP 36 -2.988 35.212 3.626 1.00 4.03 C ATOM 345 C TRP 36 -2.436 41.469 7.473 1.00 4.03 C ATOM 346 O TRP 36 -2.753 42.613 7.113 1.00 4.03 O ATOM 347 N ILE 37 -1.291 41.187 8.113 1.00 4.24 N ATOM 349 CA ILE 37 -0.234 42.184 8.401 1.00 4.24 C ATOM 350 CB ILE 37 0.742 41.653 9.556 1.00 4.24 C ATOM 351 CG2 ILE 37 1.497 40.362 9.115 1.00 4.24 C ATOM 352 CG1 ILE 37 1.673 42.773 10.069 1.00 4.24 C ATOM 353 CD1 ILE 37 1.985 42.726 11.570 1.00 4.24 C ATOM 354 C ILE 37 0.517 42.664 7.119 1.00 4.24 C ATOM 355 O ILE 37 0.708 43.870 6.921 1.00 4.24 O ATOM 356 N SER 38 0.927 41.697 6.289 1.00 4.76 N ATOM 358 CA SER 38 1.654 41.894 5.019 1.00 4.76 C ATOM 359 CB SER 38 2.340 40.588 4.606 1.00 4.76 C ATOM 360 OG SER 38 1.417 39.513 4.570 1.00 4.76 O ATOM 362 C SER 38 0.904 42.498 3.810 1.00 4.76 C ATOM 363 O SER 38 1.490 43.275 3.047 1.00 4.76 O ATOM 364 N SER 39 -0.382 42.143 3.664 1.00 5.25 N ATOM 366 CA SER 39 -1.257 42.559 2.541 1.00 5.25 C ATOM 367 CB SER 39 -2.601 41.821 2.628 1.00 5.25 C ATOM 368 OG SER 39 -3.366 41.960 1.440 1.00 5.25 O ATOM 370 C SER 39 -1.506 44.059 2.273 1.00 5.25 C ATOM 371 O SER 39 -1.494 44.466 1.104 1.00 5.25 O ATOM 372 N PHE 40 -1.724 44.867 3.321 1.00 5.63 N ATOM 374 CA PHE 40 -1.980 46.317 3.171 1.00 5.63 C ATOM 375 CB PHE 40 -2.630 46.946 4.443 1.00 5.63 C ATOM 376 CG PHE 40 -1.893 46.692 5.764 1.00 5.63 C ATOM 377 CD1 PHE 40 -0.784 47.485 6.148 1.00 5.63 C ATOM 378 CD2 PHE 40 -2.364 45.713 6.667 1.00 5.63 C ATOM 379 CE1 PHE 40 -0.157 47.310 7.412 1.00 5.63 C ATOM 380 CE2 PHE 40 -1.749 45.528 7.934 1.00 5.63 C ATOM 381 CZ PHE 40 -0.643 46.329 8.308 1.00 5.63 C ATOM 382 C PHE 40 -0.796 47.165 2.658 1.00 5.63 C ATOM 383 O PHE 40 -1.002 48.111 1.889 1.00 5.63 O ATOM 384 N ILE 41 0.429 46.793 3.079 1.00 4.45 N ATOM 386 CA ILE 41 1.733 47.430 2.736 1.00 4.45 C ATOM 387 CB ILE 41 2.358 46.844 1.354 1.00 4.45 C ATOM 388 CG2 ILE 41 1.513 47.282 0.116 1.00 4.45 C ATOM 389 CG1 ILE 41 3.862 47.177 1.222 1.00 4.45 C ATOM 390 CD1 ILE 41 4.652 46.289 0.240 1.00 4.45 C ATOM 391 C ILE 41 1.773 48.984 2.866 1.00 4.45 C ATOM 392 O ILE 41 1.126 49.703 2.091 1.00 4.45 O ATOM 393 N GLY 42 2.504 49.459 3.877 1.00 4.71 N ATOM 395 CA GLY 42 2.638 50.886 4.137 1.00 4.71 C ATOM 396 C GLY 42 3.199 51.144 5.523 1.00 4.71 C ATOM 397 O GLY 42 2.705 50.575 6.503 1.00 4.71 O ATOM 398 N ARG 43 4.220 52.013 5.596 1.00 5.05 N ATOM 400 CA ARG 43 4.942 52.425 6.829 1.00 5.05 C ATOM 401 CB ARG 43 4.121 53.420 7.681 1.00 5.05 C ATOM 402 CG ARG 43 3.909 54.791 7.035 1.00 5.05 C ATOM 403 CD ARG 43 3.092 55.729 7.923 1.00 5.05 C ATOM 404 NE ARG 43 1.689 55.321 8.044 1.00 5.05 N ATOM 406 CZ ARG 43 0.762 55.962 8.758 1.00 5.05 C ATOM 407 NH1 ARG 43 -0.478 55.493 8.789 1.00 5.05 N ATOM 410 NH2 ARG 43 1.057 57.065 9.439 1.00 5.05 N ATOM 413 C ARG 43 5.493 51.277 7.705 1.00 5.05 C ATOM 414 O ARG 43 4.721 50.501 8.287 1.00 5.05 O ATOM 415 N SER 44 6.829 51.162 7.742 1.00 5.03 N ATOM 417 CA SER 44 7.558 50.138 8.511 1.00 5.03 C ATOM 418 CB SER 44 8.331 49.202 7.550 1.00 5.03 C ATOM 419 OG SER 44 8.922 48.113 8.241 1.00 5.03 O ATOM 421 C SER 44 8.511 50.830 9.513 1.00 5.03 C ATOM 422 O SER 44 9.480 50.222 9.990 1.00 5.03 O ATOM 423 N LYS 45 8.172 52.079 9.877 1.00 5.08 N ATOM 425 CA LYS 45 8.948 52.926 10.817 1.00 5.08 C ATOM 426 CG LYS 45 8.473 55.096 9.471 1.00 5.08 C ATOM 427 CD LYS 45 7.831 56.471 9.569 1.00 5.08 C ATOM 428 CE LYS 45 7.781 57.163 8.218 1.00 5.08 C ATOM 429 NZ LYS 45 7.154 58.510 8.306 1.00 5.08 N ATOM 433 C LYS 45 8.971 52.355 12.257 1.00 5.08 C ATOM 434 O LYS 45 9.859 51.557 12.578 1.00 5.08 O ATOM 435 CB LYS 45 8.412 54.372 10.812 1.00 5.08 C TER END