####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS043_1 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS043_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.74 1.74 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 1.74 1.74 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 2 - 21 0.72 2.29 LCS_AVERAGE: 40.04 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 41 41 3 3 4 15 31 35 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 20 41 41 9 19 26 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 20 41 41 9 20 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 20 41 41 10 20 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 20 41 41 10 23 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 20 41 41 12 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 20 41 41 12 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 20 41 41 16 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 20 41 41 17 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 20 41 41 17 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 20 41 41 17 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 20 41 41 17 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 20 41 41 17 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 20 41 41 17 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 20 41 41 17 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 20 41 41 10 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 20 41 41 17 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 20 41 41 17 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 20 41 41 17 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 20 41 41 9 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 20 41 41 9 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 19 41 41 4 7 19 33 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 10 41 41 4 6 16 31 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 4 41 41 3 4 6 9 23 32 37 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 4 41 41 17 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 8 41 41 3 4 9 9 22 35 37 39 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 15 41 41 17 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 15 41 41 17 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 15 41 41 17 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 15 41 41 17 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 15 41 41 17 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 15 41 41 17 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 15 41 41 9 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 15 41 41 6 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 15 41 41 9 28 33 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 15 41 41 6 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 15 41 41 9 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 15 41 41 7 24 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 15 41 41 9 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 15 41 41 11 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 15 41 41 10 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 80.01 ( 40.04 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 17 28 34 35 36 37 39 40 40 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 41.46 68.29 82.93 85.37 87.80 90.24 95.12 97.56 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.32 0.60 0.88 0.90 1.00 1.11 1.42 1.61 1.56 1.74 1.74 1.74 1.74 1.74 1.74 1.74 1.74 1.74 1.74 1.74 GDT RMS_ALL_AT 2.03 1.88 1.82 1.81 1.80 1.80 1.75 1.75 1.76 1.74 1.74 1.74 1.74 1.74 1.74 1.74 1.74 1.74 1.74 1.74 # Checking swapping # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 3.973 0 0.130 0.774 6.545 7.727 6.061 5.343 LGA Q 2 Q 2 3.025 0 0.196 0.947 3.791 28.182 21.818 3.232 LGA E 3 E 3 1.840 0 0.022 1.419 7.104 51.364 27.273 7.104 LGA T 4 T 4 1.793 0 0.024 1.106 3.409 54.545 46.494 3.409 LGA R 5 R 5 1.796 0 0.016 0.230 5.047 58.182 30.744 5.047 LGA K 6 K 6 1.210 0 0.024 1.272 5.724 69.545 45.051 5.501 LGA K 7 K 7 0.491 0 0.042 0.660 3.074 90.909 60.606 3.074 LGA C 8 C 8 0.582 0 0.029 0.761 2.584 81.818 72.727 2.584 LGA T 9 T 9 1.147 0 0.014 0.097 1.916 69.545 63.636 1.554 LGA E 10 E 10 1.140 0 0.027 0.405 1.920 73.636 62.626 1.513 LGA M 11 M 11 0.508 0 0.034 0.090 0.964 90.909 88.636 0.964 LGA K 12 K 12 0.452 0 0.034 0.665 2.085 90.909 75.758 1.998 LGA K 13 K 13 0.871 0 0.038 0.582 2.207 77.727 69.899 2.207 LGA K 14 K 14 0.966 0 0.025 0.629 3.426 77.727 67.475 3.426 LGA F 15 F 15 0.371 0 0.091 0.244 2.026 95.455 77.355 1.786 LGA K 16 K 16 0.866 0 0.029 1.242 5.414 81.818 51.313 5.035 LGA N 17 N 17 0.332 0 0.194 0.462 1.511 100.000 89.318 1.511 LGA C 18 C 18 0.889 0 0.030 0.042 0.927 81.818 81.818 0.927 LGA E 19 E 19 1.173 0 0.164 0.517 2.936 73.636 56.970 1.731 LGA V 20 V 20 1.157 0 0.019 0.049 1.466 65.455 65.455 1.156 LGA R 21 R 21 1.117 0 0.019 1.408 8.605 65.909 34.050 8.605 LGA C 22 C 22 2.759 0 0.040 0.750 5.062 32.727 23.636 5.062 LGA D 23 D 23 3.403 0 0.012 1.242 5.248 14.545 12.273 3.868 LGA E 24 E 24 4.824 0 0.022 0.614 10.472 11.364 5.051 9.175 LGA S 25 S 25 1.009 0 0.204 0.723 5.370 43.182 31.818 5.370 LGA N 26 N 26 4.751 0 0.266 1.168 9.050 10.455 5.227 6.117 LGA H 27 H 27 0.808 0 0.417 1.172 7.413 86.364 39.636 7.413 LGA C 28 C 28 0.492 0 0.114 0.153 0.775 90.909 87.879 0.775 LGA V 29 V 29 0.435 0 0.046 0.065 0.614 95.455 94.805 0.497 LGA E 30 E 30 0.153 0 0.082 0.124 0.422 100.000 100.000 0.422 LGA V 31 V 31 0.193 0 0.146 0.178 0.784 95.455 97.403 0.207 LGA R 32 R 32 0.763 0 0.093 0.731 2.860 86.364 53.223 2.314 LGA C 33 C 33 0.812 0 0.436 0.494 2.378 70.909 69.091 1.113 LGA S 34 S 34 1.144 0 0.204 0.721 2.133 62.727 61.212 1.549 LGA D 35 D 35 1.330 0 0.022 1.088 3.772 61.818 46.818 3.772 LGA T 36 T 36 1.801 0 0.288 1.140 4.042 58.182 46.753 4.042 LGA K 37 K 37 0.702 0 0.164 1.088 2.367 78.182 71.717 2.367 LGA Y 38 Y 38 1.210 0 0.015 1.366 4.810 82.273 52.424 4.810 LGA T 39 T 39 0.839 0 0.043 0.079 2.206 74.091 62.338 1.724 LGA L 40 L 40 0.213 0 0.050 0.987 3.765 95.455 65.000 3.765 LGA C 41 C 41 1.068 0 0.107 0.820 3.803 82.273 67.532 3.803 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 1.743 1.698 2.749 68.769 55.827 32.905 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 40 1.61 87.805 93.271 2.343 LGA_LOCAL RMSD: 1.607 Number of atoms: 40 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.753 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 1.743 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.942441 * X + 0.251299 * Y + 0.220578 * Z + -3.835245 Y_new = 0.041127 * X + 0.567548 * Y + -0.822313 * Z + -13.152113 Z_new = -0.331835 * X + 0.784052 * Y + 0.524545 * Z + 2.433093 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.043611 0.338248 0.981168 [DEG: 2.4987 19.3802 56.2168 ] ZXZ: 0.262072 1.018616 -0.400371 [DEG: 15.0156 58.3624 -22.9396 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS043_1 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS043_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 40 1.61 93.271 1.74 REMARK ---------------------------------------------------------- MOLECULE T0955TS043_1 PFRMAT TS TARGET T0955 MODEL 1 PARENT N/A ATOM 1 N SER 1 -3.835 -13.152 2.433 1.00 0.90 N ATOM 2 CA SER 1 -2.461 -13.092 1.949 1.00 0.90 C ATOM 3 C SER 1 -1.585 -12.264 2.880 1.00 0.90 C ATOM 4 O SER 1 -1.668 -11.035 2.896 1.00 0.90 O ATOM 5 CB SER 1 -2.425 -12.506 0.552 1.00 0.90 C ATOM 6 OG SER 1 -1.105 -12.330 0.115 1.00 0.90 O ATOM 14 N GLN 2 -0.746 -12.943 3.655 1.00 0.65 N ATOM 15 CA GLN 2 0.175 -12.268 4.562 1.00 0.65 C ATOM 16 C GLN 2 1.242 -11.499 3.794 1.00 0.65 C ATOM 17 O GLN 2 1.716 -10.456 4.247 1.00 0.65 O ATOM 18 CB GLN 2 0.836 -13.279 5.503 1.00 0.65 C ATOM 19 CG GLN 2 1.694 -12.650 6.588 1.00 0.65 C ATOM 20 CD GLN 2 0.893 -11.756 7.515 1.00 0.65 C ATOM 21 OE1 GLN 2 -0.234 -12.084 7.897 1.00 0.65 O ATOM 22 NE2 GLN 2 1.470 -10.617 7.882 1.00 0.65 N ATOM 31 N GLU 3 1.615 -12.018 2.629 1.00 0.47 N ATOM 32 CA GLU 3 2.613 -11.370 1.787 1.00 0.47 C ATOM 33 C GLU 3 2.097 -10.046 1.237 1.00 0.47 C ATOM 34 O GLU 3 2.857 -9.092 1.076 1.00 0.47 O ATOM 35 CB GLU 3 3.015 -12.290 0.631 1.00 0.47 C ATOM 36 CG GLU 3 3.780 -13.535 1.057 1.00 0.47 C ATOM 37 CD GLU 3 5.073 -13.217 1.755 1.00 0.47 C ATOM 38 OE1 GLU 3 5.826 -12.427 1.238 1.00 0.47 O ATOM 39 OE2 GLU 3 5.307 -13.763 2.806 1.00 0.47 O ATOM 46 N THR 4 0.800 -9.995 0.953 1.00 0.55 N ATOM 47 CA THR 4 0.146 -8.748 0.577 1.00 0.55 C ATOM 48 C THR 4 0.162 -7.749 1.728 1.00 0.55 C ATOM 49 O THR 4 0.389 -6.557 1.525 1.00 0.55 O ATOM 50 CB THR 4 -1.305 -8.996 0.126 1.00 0.55 C ATOM 51 OG1 THR 4 -1.312 -9.867 -1.012 1.00 0.55 O ATOM 52 CG2 THR 4 -1.981 -7.683 -0.240 1.00 0.55 C ATOM 60 N ARG 5 -0.083 -8.244 2.936 1.00 0.50 N ATOM 61 CA ARG 5 -0.011 -7.415 4.133 1.00 0.50 C ATOM 62 C ARG 5 1.390 -6.846 4.326 1.00 0.50 C ATOM 63 O ARG 5 1.553 -5.706 4.758 1.00 0.50 O ATOM 64 CB ARG 5 -0.404 -8.216 5.365 1.00 0.50 C ATOM 65 CG ARG 5 -1.878 -8.577 5.450 1.00 0.50 C ATOM 66 CD ARG 5 -2.161 -9.461 6.611 1.00 0.50 C ATOM 67 NE ARG 5 -3.579 -9.764 6.727 1.00 0.50 N ATOM 68 CZ ARG 5 -4.087 -10.773 7.462 1.00 0.50 C ATOM 69 NH1 ARG 5 -3.283 -11.564 8.138 1.00 0.50 N ATOM 70 NH2 ARG 5 -5.393 -10.966 7.504 1.00 0.50 N ATOM 84 N LYS 6 2.398 -7.649 4.002 1.00 0.25 N ATOM 85 CA LYS 6 3.783 -7.198 4.052 1.00 0.25 C ATOM 86 C LYS 6 4.029 -6.066 3.062 1.00 0.25 C ATOM 87 O LYS 6 4.688 -5.078 3.385 1.00 0.25 O ATOM 88 CB LYS 6 4.737 -8.360 3.770 1.00 0.25 C ATOM 89 CG LYS 6 4.803 -9.402 4.878 1.00 0.25 C ATOM 90 CD LYS 6 5.712 -10.560 4.493 1.00 0.25 C ATOM 91 CE LYS 6 5.703 -11.649 5.556 1.00 0.25 C ATOM 92 NZ LYS 6 6.532 -12.819 5.161 1.00 0.25 N ATOM 106 N LYS 7 3.496 -6.217 1.855 1.00 0.24 N ATOM 107 CA LYS 7 3.630 -5.194 0.824 1.00 0.24 C ATOM 108 C LYS 7 2.955 -3.895 1.246 1.00 0.24 C ATOM 109 O LYS 7 3.490 -2.808 1.033 1.00 0.24 O ATOM 110 CB LYS 7 3.044 -5.687 -0.500 1.00 0.24 C ATOM 111 CG LYS 7 3.873 -6.760 -1.194 1.00 0.24 C ATOM 112 CD LYS 7 3.226 -7.199 -2.499 1.00 0.24 C ATOM 113 CE LYS 7 4.054 -8.269 -3.195 1.00 0.24 C ATOM 114 NZ LYS 7 3.433 -8.708 -4.474 1.00 0.24 N ATOM 128 N CYS 8 1.774 -4.015 1.844 1.00 0.29 N ATOM 129 CA CYS 8 1.051 -2.856 2.351 1.00 0.29 C ATOM 130 C CYS 8 1.819 -2.178 3.478 1.00 0.29 C ATOM 131 O CYS 8 1.930 -0.952 3.516 1.00 0.29 O ATOM 132 CB CYS 8 -0.332 -3.265 2.858 1.00 0.29 C ATOM 133 SG CYS 8 -1.484 -3.750 1.551 1.00 0.29 S ATOM 139 N THR 9 2.348 -2.981 4.394 1.00 0.31 N ATOM 140 CA THR 9 3.124 -2.461 5.514 1.00 0.31 C ATOM 141 C THR 9 4.327 -1.663 5.026 1.00 0.31 C ATOM 142 O THR 9 4.623 -0.588 5.549 1.00 0.31 O ATOM 143 CB THR 9 3.597 -3.598 6.437 1.00 0.31 C ATOM 144 OG1 THR 9 2.460 -4.289 6.970 1.00 0.31 O ATOM 145 CG2 THR 9 4.433 -3.044 7.580 1.00 0.31 C ATOM 153 N GLU 10 5.016 -2.195 4.024 1.00 0.24 N ATOM 154 CA GLU 10 6.137 -1.495 3.408 1.00 0.24 C ATOM 155 C GLU 10 5.719 -0.119 2.906 1.00 0.24 C ATOM 156 O GLU 10 6.388 0.880 3.172 1.00 0.24 O ATOM 157 CB GLU 10 6.710 -2.317 2.252 1.00 0.24 C ATOM 158 CG GLU 10 7.881 -1.663 1.534 1.00 0.24 C ATOM 159 CD GLU 10 8.389 -2.478 0.377 1.00 0.24 C ATOM 160 OE1 GLU 10 8.072 -3.641 0.311 1.00 0.24 O ATOM 161 OE2 GLU 10 9.095 -1.937 -0.440 1.00 0.24 O ATOM 168 N MET 11 4.607 -0.072 2.181 1.00 0.25 N ATOM 169 CA MET 11 4.107 1.180 1.623 1.00 0.25 C ATOM 170 C MET 11 3.690 2.145 2.725 1.00 0.25 C ATOM 171 O MET 11 3.854 3.358 2.597 1.00 0.25 O ATOM 172 CB MET 11 2.936 0.908 0.681 1.00 0.25 C ATOM 173 CG MET 11 3.314 0.171 -0.596 1.00 0.25 C ATOM 174 SD MET 11 4.466 1.106 -1.623 1.00 0.25 S ATOM 175 CE MET 11 6.030 0.417 -1.088 1.00 0.25 C ATOM 185 N LYS 12 3.148 1.599 3.809 1.00 0.30 N ATOM 186 CA LYS 12 2.726 2.409 4.946 1.00 0.30 C ATOM 187 C LYS 12 3.919 3.065 5.628 1.00 0.30 C ATOM 188 O LYS 12 3.847 4.216 6.057 1.00 0.30 O ATOM 189 CB LYS 12 1.948 1.558 5.950 1.00 0.30 C ATOM 190 CG LYS 12 0.553 1.158 5.488 1.00 0.30 C ATOM 191 CD LYS 12 -0.135 0.270 6.514 1.00 0.30 C ATOM 192 CE LYS 12 -1.521 -0.149 6.044 1.00 0.30 C ATOM 193 NZ LYS 12 -2.206 -1.018 7.039 1.00 0.30 N ATOM 207 N LYS 13 5.019 2.324 5.727 1.00 0.35 N ATOM 208 CA LYS 13 6.235 2.838 6.345 1.00 0.35 C ATOM 209 C LYS 13 6.919 3.862 5.449 1.00 0.35 C ATOM 210 O LYS 13 7.439 4.870 5.928 1.00 0.35 O ATOM 211 CB LYS 13 7.198 1.693 6.664 1.00 0.35 C ATOM 212 CG LYS 13 6.753 0.797 7.813 1.00 0.35 C ATOM 213 CD LYS 13 7.759 -0.314 8.069 1.00 0.35 C ATOM 214 CE LYS 13 7.356 -1.163 9.267 1.00 0.35 C ATOM 215 NZ LYS 13 8.317 -2.271 9.514 1.00 0.35 N ATOM 229 N LYS 14 6.913 3.599 4.147 1.00 0.48 N ATOM 230 CA LYS 14 7.563 4.481 3.184 1.00 0.48 C ATOM 231 C LYS 14 6.701 5.702 2.888 1.00 0.48 C ATOM 232 O LYS 14 7.216 6.780 2.588 1.00 0.48 O ATOM 233 CB LYS 14 7.870 3.727 1.890 1.00 0.48 C ATOM 234 CG LYS 14 8.990 2.702 2.010 1.00 0.48 C ATOM 235 CD LYS 14 9.222 1.980 0.691 1.00 0.48 C ATOM 236 CE LYS 14 10.437 1.067 0.765 1.00 0.48 C ATOM 237 NZ LYS 14 10.627 0.290 -0.490 1.00 0.48 N ATOM 251 N PHE 15 5.387 5.527 2.972 1.00 0.58 N ATOM 252 CA PHE 15 4.451 6.613 2.704 1.00 0.58 C ATOM 253 C PHE 15 3.473 6.794 3.857 1.00 0.58 C ATOM 254 O PHE 15 2.287 6.482 3.734 1.00 0.58 O ATOM 255 CB PHE 15 3.678 6.344 1.411 1.00 0.58 C ATOM 256 CG PHE 15 4.558 6.148 0.209 1.00 0.58 C ATOM 257 CD1 PHE 15 4.892 4.873 -0.224 1.00 0.58 C ATOM 258 CD2 PHE 15 5.055 7.238 -0.491 1.00 0.58 C ATOM 259 CE1 PHE 15 5.701 4.692 -1.330 1.00 0.58 C ATOM 260 CE2 PHE 15 5.863 7.060 -1.596 1.00 0.58 C ATOM 261 CZ PHE 15 6.187 5.785 -2.016 1.00 0.58 C ATOM 271 N LYS 16 3.975 7.299 4.978 1.00 0.87 N ATOM 272 CA LYS 16 3.186 7.381 6.202 1.00 0.87 C ATOM 273 C LYS 16 2.083 8.424 6.077 1.00 0.87 C ATOM 274 O LYS 16 1.080 8.368 6.788 1.00 0.87 O ATOM 275 CB LYS 16 4.084 7.706 7.397 1.00 0.87 C ATOM 276 CG LYS 16 5.034 6.583 7.794 1.00 0.87 C ATOM 277 CD LYS 16 5.905 6.988 8.973 1.00 0.87 C ATOM 278 CE LYS 16 6.853 5.867 9.372 1.00 0.87 C ATOM 279 NZ LYS 16 7.741 6.263 10.500 1.00 0.87 N ATOM 293 N ASN 17 2.275 9.375 5.170 1.00 0.81 N ATOM 294 CA ASN 17 1.327 10.469 4.994 1.00 0.81 C ATOM 295 C ASN 17 0.371 10.191 3.842 1.00 0.81 C ATOM 296 O ASN 17 -0.371 11.073 3.412 1.00 0.81 O ATOM 297 CB ASN 17 2.061 11.780 4.775 1.00 0.81 C ATOM 298 CG ASN 17 2.801 12.241 6.000 1.00 0.81 C ATOM 299 OD1 ASN 17 2.304 12.116 7.125 1.00 0.81 O ATOM 300 ND2 ASN 17 3.982 12.770 5.803 1.00 0.81 N ATOM 307 N CYS 18 0.394 8.959 3.347 1.00 0.51 N ATOM 308 CA CYS 18 -0.467 8.562 2.239 1.00 0.51 C ATOM 309 C CYS 18 -1.409 7.438 2.648 1.00 0.51 C ATOM 310 O CYS 18 -1.194 6.773 3.661 1.00 0.51 O ATOM 311 CB CYS 18 0.370 8.109 1.042 1.00 0.51 C ATOM 312 SG CYS 18 1.505 9.370 0.415 1.00 0.51 S ATOM 318 N GLU 19 -2.454 7.230 1.853 1.00 0.45 N ATOM 319 CA GLU 19 -3.408 6.157 2.107 1.00 0.45 C ATOM 320 C GLU 19 -3.034 4.895 1.340 1.00 0.45 C ATOM 321 O GLU 19 -2.963 4.903 0.112 1.00 0.45 O ATOM 322 CB GLU 19 -4.823 6.598 1.724 1.00 0.45 C ATOM 323 CG GLU 19 -5.903 5.564 2.010 1.00 0.45 C ATOM 324 CD GLU 19 -7.268 6.008 1.564 1.00 0.45 C ATOM 325 OE1 GLU 19 -7.353 6.967 0.836 1.00 0.45 O ATOM 326 OE2 GLU 19 -8.229 5.385 1.952 1.00 0.45 O ATOM 333 N VAL 20 -2.797 3.812 2.072 1.00 0.38 N ATOM 334 CA VAL 20 -2.367 2.557 1.468 1.00 0.38 C ATOM 335 C VAL 20 -3.495 1.534 1.460 1.00 0.38 C ATOM 336 O VAL 20 -3.954 1.094 2.514 1.00 0.38 O ATOM 337 CB VAL 20 -1.160 1.980 2.232 1.00 0.38 C ATOM 338 CG1 VAL 20 -0.722 0.659 1.618 1.00 0.38 C ATOM 339 CG2 VAL 20 -0.017 2.983 2.227 1.00 0.38 C ATOM 349 N ARG 21 -3.940 1.160 0.266 1.00 0.45 N ATOM 350 CA ARG 21 -5.053 0.229 0.119 1.00 0.45 C ATOM 351 C ARG 21 -4.780 -0.786 -0.984 1.00 0.45 C ATOM 352 O ARG 21 -4.479 -0.416 -2.120 1.00 0.45 O ATOM 353 CB ARG 21 -6.340 0.978 -0.190 1.00 0.45 C ATOM 354 CG ARG 21 -6.822 1.906 0.913 1.00 0.45 C ATOM 355 CD ARG 21 -7.309 1.148 2.095 1.00 0.45 C ATOM 356 NE ARG 21 -7.848 2.028 3.119 1.00 0.45 N ATOM 357 CZ ARG 21 -7.114 2.623 4.079 1.00 0.45 C ATOM 358 NH1 ARG 21 -5.816 2.424 4.134 1.00 0.45 N ATOM 359 NH2 ARG 21 -7.701 3.408 4.967 1.00 0.45 N ATOM 373 N CYS 22 -4.889 -2.066 -0.645 1.00 0.75 N ATOM 374 CA CYS 22 -4.756 -3.134 -1.629 1.00 0.75 C ATOM 375 C CYS 22 -6.036 -3.298 -2.439 1.00 0.75 C ATOM 376 O CYS 22 -7.109 -2.868 -2.017 1.00 0.75 O ATOM 377 CB CYS 22 -4.420 -4.458 -0.942 1.00 0.75 C ATOM 378 SG CYS 22 -5.755 -5.120 0.082 1.00 0.75 S ATOM 384 N ASP 23 -5.915 -3.923 -3.605 1.00 0.73 N ATOM 385 CA ASP 23 -7.062 -4.147 -4.476 1.00 0.73 C ATOM 386 C ASP 23 -7.847 -5.379 -4.048 1.00 0.73 C ATOM 387 O ASP 23 -7.483 -6.056 -3.087 1.00 0.73 O ATOM 388 CB ASP 23 -6.609 -4.303 -5.930 1.00 0.73 C ATOM 389 CG ASP 23 -5.791 -5.567 -6.163 1.00 0.73 C ATOM 390 OD1 ASP 23 -6.009 -6.528 -5.465 1.00 0.73 O ATOM 391 OD2 ASP 23 -4.957 -5.557 -7.036 1.00 0.73 O ATOM 396 N GLU 24 -8.928 -5.665 -4.766 1.00 1.11 N ATOM 397 CA GLU 24 -9.868 -6.703 -4.356 1.00 1.11 C ATOM 398 C GLU 24 -9.212 -8.077 -4.373 1.00 1.11 C ATOM 399 O GLU 24 -9.552 -8.948 -3.571 1.00 1.11 O ATOM 400 CB GLU 24 -11.095 -6.702 -5.270 1.00 1.11 C ATOM 401 CG GLU 24 -11.990 -5.480 -5.120 1.00 1.11 C ATOM 402 CD GLU 24 -13.155 -5.488 -6.069 1.00 1.11 C ATOM 403 OE1 GLU 24 -13.191 -6.334 -6.929 1.00 1.11 O ATOM 404 OE2 GLU 24 -14.012 -4.646 -5.934 1.00 1.11 O ATOM 411 N SER 25 -8.269 -8.267 -5.290 1.00 0.67 N ATOM 412 CA SER 25 -7.593 -9.550 -5.440 1.00 0.67 C ATOM 413 C SER 25 -6.401 -9.658 -4.499 1.00 0.67 C ATOM 414 O SER 25 -5.759 -10.705 -4.412 1.00 0.67 O ATOM 415 CB SER 25 -7.135 -9.734 -6.875 1.00 0.67 C ATOM 416 OG SER 25 -6.138 -8.808 -7.205 1.00 0.67 O ATOM 422 N ASN 26 -6.108 -8.570 -3.795 1.00 0.30 N ATOM 423 CA ASN 26 -4.944 -8.516 -2.918 1.00 0.30 C ATOM 424 C ASN 26 -3.653 -8.704 -3.704 1.00 0.30 C ATOM 425 O ASN 26 -2.686 -9.274 -3.199 1.00 0.30 O ATOM 426 CB ASN 26 -5.056 -9.554 -1.817 1.00 0.30 C ATOM 427 CG ASN 26 -6.253 -9.334 -0.934 1.00 0.30 C ATOM 428 OD1 ASN 26 -6.530 -8.205 -0.514 1.00 0.30 O ATOM 429 ND2 ASN 26 -6.967 -10.392 -0.645 1.00 0.30 N ATOM 436 N HIS 27 -3.644 -8.220 -4.942 1.00 0.61 N ATOM 437 CA HIS 27 -2.491 -8.383 -5.819 1.00 0.61 C ATOM 438 C HIS 27 -1.643 -7.119 -5.856 1.00 0.61 C ATOM 439 O HIS 27 -0.440 -7.160 -5.602 1.00 0.61 O ATOM 440 CB HIS 27 -2.939 -8.746 -7.238 1.00 0.61 C ATOM 441 CG HIS 27 -1.805 -8.998 -8.182 1.00 0.61 C ATOM 442 ND1 HIS 27 -0.940 -10.062 -8.036 1.00 0.61 N ATOM 443 CD2 HIS 27 -1.391 -8.325 -9.281 1.00 0.61 C ATOM 444 CE1 HIS 27 -0.043 -10.033 -9.008 1.00 0.61 C ATOM 445 NE2 HIS 27 -0.296 -8.989 -9.776 1.00 0.61 N ATOM 453 N CYS 28 -2.278 -5.995 -6.173 1.00 0.42 N ATOM 454 CA CYS 28 -1.587 -4.712 -6.222 1.00 0.42 C ATOM 455 C CYS 28 -1.958 -3.840 -5.030 1.00 0.42 C ATOM 456 O CYS 28 -3.040 -3.979 -4.461 1.00 0.42 O ATOM 457 CB CYS 28 -1.923 -3.970 -7.515 1.00 0.42 C ATOM 458 SG CYS 28 -1.357 -4.806 -9.016 1.00 0.42 S ATOM 464 N VAL 29 -1.054 -2.941 -4.656 1.00 0.29 N ATOM 465 CA VAL 29 -1.312 -1.999 -3.573 1.00 0.29 C ATOM 466 C VAL 29 -1.255 -0.560 -4.069 1.00 0.29 C ATOM 467 O VAL 29 -0.265 -0.138 -4.665 1.00 0.29 O ATOM 468 CB VAL 29 -0.283 -2.190 -2.443 1.00 0.29 C ATOM 469 CG1 VAL 29 -0.528 -1.189 -1.324 1.00 0.29 C ATOM 470 CG2 VAL 29 -0.352 -3.615 -1.916 1.00 0.29 C ATOM 480 N GLU 30 -2.324 0.189 -3.818 1.00 0.26 N ATOM 481 CA GLU 30 -2.404 1.578 -4.253 1.00 0.26 C ATOM 482 C GLU 30 -2.042 2.531 -3.122 1.00 0.26 C ATOM 483 O GLU 30 -2.609 2.459 -2.031 1.00 0.26 O ATOM 484 CB GLU 30 -3.810 1.894 -4.769 1.00 0.26 C ATOM 485 CG GLU 30 -3.987 3.317 -5.280 1.00 0.26 C ATOM 486 CD GLU 30 -5.351 3.565 -5.862 1.00 0.26 C ATOM 487 OE1 GLU 30 -6.260 3.814 -5.109 1.00 0.26 O ATOM 488 OE2 GLU 30 -5.483 3.505 -7.062 1.00 0.26 O ATOM 495 N VAL 31 -1.096 3.425 -3.387 1.00 0.32 N ATOM 496 CA VAL 31 -0.705 4.439 -2.417 1.00 0.32 C ATOM 497 C VAL 31 -1.164 5.824 -2.853 1.00 0.32 C ATOM 498 O VAL 31 -0.615 6.405 -3.790 1.00 0.32 O ATOM 499 CB VAL 31 0.824 4.443 -2.232 1.00 0.32 C ATOM 500 CG1 VAL 31 1.237 5.505 -1.224 1.00 0.32 C ATOM 501 CG2 VAL 31 1.296 3.066 -1.790 1.00 0.32 C ATOM 511 N ARG 32 -2.175 6.350 -2.168 1.00 0.30 N ATOM 512 CA ARG 32 -2.816 7.592 -2.582 1.00 0.30 C ATOM 513 C ARG 32 -2.141 8.800 -1.943 1.00 0.30 C ATOM 514 O ARG 32 -2.245 9.014 -0.735 1.00 0.30 O ATOM 515 CB ARG 32 -4.291 7.584 -2.209 1.00 0.30 C ATOM 516 CG ARG 32 -5.114 6.498 -2.883 1.00 0.30 C ATOM 517 CD ARG 32 -6.477 6.401 -2.301 1.00 0.30 C ATOM 518 NE ARG 32 -7.270 5.367 -2.946 1.00 0.30 N ATOM 519 CZ ARG 32 -8.484 4.960 -2.526 1.00 0.30 C ATOM 520 NH1 ARG 32 -9.030 5.510 -1.464 1.00 0.30 N ATOM 521 NH2 ARG 32 -9.126 4.011 -3.183 1.00 0.30 N ATOM 535 N CYS 33 -1.448 9.586 -2.760 1.00 0.67 N ATOM 536 CA CYS 33 -0.827 10.820 -2.293 1.00 0.67 C ATOM 537 C CYS 33 -1.747 12.015 -2.507 1.00 0.67 C ATOM 538 O CYS 33 -2.865 11.870 -3.000 1.00 0.67 O ATOM 539 CB CYS 33 0.496 11.065 -3.019 1.00 0.67 C ATOM 540 SG CYS 33 1.704 9.733 -2.821 1.00 0.67 S ATOM 546 N SER 34 -1.269 13.198 -2.134 1.00 1.30 N ATOM 547 CA SER 34 -2.049 14.420 -2.279 1.00 1.30 C ATOM 548 C SER 34 -2.018 14.925 -3.717 1.00 1.30 C ATOM 549 O SER 34 -2.950 15.589 -4.171 1.00 1.30 O ATOM 550 CB SER 34 -1.519 15.492 -1.347 1.00 1.30 C ATOM 551 OG SER 34 -0.222 15.878 -1.711 1.00 1.30 O ATOM 557 N ASP 35 -0.943 14.604 -4.428 1.00 2.34 N ATOM 558 CA ASP 35 -0.766 15.065 -5.800 1.00 2.34 C ATOM 559 C ASP 35 -0.878 13.911 -6.788 1.00 2.34 C ATOM 560 O ASP 35 -1.368 14.082 -7.904 1.00 2.34 O ATOM 561 CB ASP 35 0.590 15.755 -5.964 1.00 2.34 C ATOM 562 CG ASP 35 0.720 17.014 -5.117 1.00 2.34 C ATOM 563 OD1 ASP 35 -0.148 17.851 -5.193 1.00 2.34 O ATOM 564 OD2 ASP 35 1.688 17.126 -4.401 1.00 2.34 O ATOM 569 N THR 36 -0.421 12.735 -6.370 1.00 0.51 N ATOM 570 CA THR 36 -0.361 11.578 -7.256 1.00 0.51 C ATOM 571 C THR 36 -0.688 10.294 -6.505 1.00 0.51 C ATOM 572 O THR 36 -1.322 10.323 -5.450 1.00 0.51 O ATOM 573 CB THR 36 1.025 11.455 -7.914 1.00 0.51 C ATOM 574 OG1 THR 36 0.995 10.419 -8.905 1.00 0.51 O ATOM 575 CG2 THR 36 2.083 11.124 -6.872 1.00 0.51 C ATOM 583 N LYS 37 -0.251 9.166 -7.055 1.00 0.39 N ATOM 584 CA LYS 37 -0.368 7.884 -6.370 1.00 0.39 C ATOM 585 C LYS 37 0.596 6.859 -6.953 1.00 0.39 C ATOM 586 O LYS 37 1.106 7.031 -8.060 1.00 0.39 O ATOM 587 CB LYS 37 -1.803 7.361 -6.450 1.00 0.39 C ATOM 588 CG LYS 37 -2.264 7.003 -7.857 1.00 0.39 C ATOM 589 CD LYS 37 -3.693 6.481 -7.854 1.00 0.39 C ATOM 590 CE LYS 37 -4.097 5.963 -9.226 1.00 0.39 C ATOM 591 NZ LYS 37 -5.474 5.398 -9.224 1.00 0.39 N ATOM 605 N TYR 38 0.842 5.791 -6.201 1.00 0.26 N ATOM 606 CA TYR 38 1.770 4.751 -6.628 1.00 0.26 C ATOM 607 C TYR 38 1.089 3.388 -6.670 1.00 0.26 C ATOM 608 O TYR 38 0.168 3.120 -5.900 1.00 0.26 O ATOM 609 CB TYR 38 2.988 4.707 -5.701 1.00 0.26 C ATOM 610 CG TYR 38 3.781 5.995 -5.673 1.00 0.26 C ATOM 611 CD1 TYR 38 3.506 6.957 -4.713 1.00 0.26 C ATOM 612 CD2 TYR 38 4.781 6.213 -6.608 1.00 0.26 C ATOM 613 CE1 TYR 38 4.231 8.134 -4.688 1.00 0.26 C ATOM 614 CE2 TYR 38 5.506 7.389 -6.582 1.00 0.26 C ATOM 615 CZ TYR 38 5.233 8.347 -5.627 1.00 0.26 C ATOM 616 OH TYR 38 5.954 9.519 -5.602 1.00 0.26 O ATOM 626 N THR 39 1.550 2.531 -7.574 1.00 0.37 N ATOM 627 CA THR 39 1.036 1.170 -7.670 1.00 0.37 C ATOM 628 C THR 39 2.138 0.147 -7.431 1.00 0.37 C ATOM 629 O THR 39 3.119 0.091 -8.174 1.00 0.37 O ATOM 630 CB THR 39 0.386 0.918 -9.043 1.00 0.37 C ATOM 631 OG1 THR 39 -0.701 1.833 -9.235 1.00 0.37 O ATOM 632 CG2 THR 39 -0.134 -0.508 -9.134 1.00 0.37 C ATOM 640 N LEU 40 1.973 -0.662 -6.390 1.00 0.31 N ATOM 641 CA LEU 40 2.930 -1.716 -6.078 1.00 0.31 C ATOM 642 C LEU 40 2.408 -3.080 -6.513 1.00 0.31 C ATOM 643 O LEU 40 1.349 -3.520 -6.069 1.00 0.31 O ATOM 644 CB LEU 40 3.230 -1.733 -4.574 1.00 0.31 C ATOM 645 CG LEU 40 4.166 -2.851 -4.095 1.00 0.31 C ATOM 646 CD1 LEU 40 5.547 -2.655 -4.705 1.00 0.31 C ATOM 647 CD2 LEU 40 4.233 -2.840 -2.575 1.00 0.31 C ATOM 659 N CYS 41 3.159 -3.744 -7.386 1.00 0.44 N ATOM 660 CA CYS 41 2.761 -5.049 -7.901 1.00 0.44 C ATOM 661 C CYS 41 3.488 -6.173 -7.174 1.00 0.44 C ATOM 662 O CYS 41 3.105 -6.537 -6.096 1.00 0.44 O ATOM 663 OXT CYS 41 4.443 -6.695 -7.680 1.00 0.44 O ATOM 664 CB CYS 41 3.051 -5.147 -9.399 1.00 0.44 C ATOM 665 SG CYS 41 2.602 -6.736 -10.136 1.00 0.44 S TER END