####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS152_1 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS152_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 2 - 23 4.91 12.07 LONGEST_CONTINUOUS_SEGMENT: 22 3 - 24 4.97 12.19 LCS_AVERAGE: 47.29 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 4 - 15 1.88 16.39 LONGEST_CONTINUOUS_SEGMENT: 12 5 - 16 2.00 17.82 LCS_AVERAGE: 21.12 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 6 - 14 0.72 17.71 LONGEST_CONTINUOUS_SEGMENT: 9 7 - 15 0.89 18.07 LCS_AVERAGE: 14.40 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 10 17 3 3 3 9 9 11 12 14 14 15 17 17 19 24 26 27 28 29 29 30 LCS_GDT Q 2 Q 2 6 10 22 4 6 6 9 9 11 12 14 14 15 19 21 23 24 26 27 28 29 29 30 LCS_GDT E 3 E 3 6 10 22 5 6 6 9 9 11 12 14 15 15 17 21 23 24 26 27 28 29 29 30 LCS_GDT T 4 T 4 6 12 22 5 6 6 9 10 13 13 14 16 16 19 21 23 24 26 27 28 29 29 30 LCS_GDT R 5 R 5 6 12 22 5 6 6 9 10 13 13 14 16 16 19 21 23 24 26 27 28 29 29 30 LCS_GDT K 6 K 6 9 12 22 5 8 9 10 10 13 13 14 16 16 19 21 23 24 26 27 28 29 29 30 LCS_GDT K 7 K 7 9 12 22 5 8 9 10 10 13 13 14 16 16 19 21 23 24 26 27 28 29 29 30 LCS_GDT C 8 C 8 9 12 22 5 8 9 10 10 13 13 14 15 16 17 19 22 24 26 27 28 29 29 30 LCS_GDT T 9 T 9 9 12 22 5 8 9 10 10 13 13 14 15 16 19 21 23 24 26 27 28 29 29 30 LCS_GDT E 10 E 10 9 12 22 5 8 9 10 10 13 13 14 16 16 19 21 23 24 26 27 28 29 29 30 LCS_GDT M 11 M 11 9 12 22 5 8 9 10 10 13 13 14 15 15 19 21 23 24 26 27 28 29 29 30 LCS_GDT K 12 K 12 9 12 22 5 8 9 10 10 13 13 14 16 16 19 21 23 24 26 27 28 29 29 30 LCS_GDT K 13 K 13 9 12 22 5 8 9 10 10 13 13 14 16 16 19 21 23 24 26 27 28 29 29 30 LCS_GDT K 14 K 14 9 12 22 4 8 9 10 10 13 13 14 15 15 19 21 23 24 26 27 28 29 29 30 LCS_GDT F 15 F 15 9 12 22 3 5 8 10 10 13 13 14 16 16 19 21 23 24 26 27 28 29 29 30 LCS_GDT K 16 K 16 5 12 22 3 4 5 8 8 11 12 13 16 16 19 21 23 24 26 27 28 29 29 30 LCS_GDT N 17 N 17 4 6 22 3 4 5 5 5 7 8 10 12 14 18 20 22 24 26 27 28 29 29 30 LCS_GDT C 18 C 18 4 6 22 3 4 5 5 6 7 8 11 16 16 19 21 23 24 26 27 28 29 29 30 LCS_GDT E 19 E 19 4 6 22 3 4 5 5 6 7 8 11 16 16 19 21 23 24 26 27 28 29 29 30 LCS_GDT V 20 V 20 4 6 22 3 4 5 5 6 7 8 11 16 16 19 21 23 24 26 27 28 29 29 30 LCS_GDT R 21 R 21 4 6 22 3 4 5 5 6 6 8 11 16 16 19 21 23 24 26 27 28 29 29 30 LCS_GDT C 22 C 22 4 6 22 3 4 5 5 6 6 9 11 16 16 19 21 23 24 26 27 28 29 29 30 LCS_GDT D 23 D 23 4 6 22 3 4 5 5 6 6 9 11 16 16 19 21 23 24 26 27 28 29 29 30 LCS_GDT E 24 E 24 3 6 22 3 4 4 5 6 6 9 9 11 14 19 21 23 24 26 27 28 29 29 30 LCS_GDT S 25 S 25 3 8 16 3 4 5 5 6 7 9 9 11 12 13 16 22 24 26 27 28 29 29 30 LCS_GDT N 26 N 26 6 8 16 3 4 6 7 7 8 9 10 12 14 16 19 19 21 21 23 25 29 29 30 LCS_GDT H 27 H 27 6 8 16 3 5 6 7 7 8 9 10 11 14 16 19 19 21 21 23 26 29 29 30 LCS_GDT C 28 C 28 6 8 16 3 5 6 7 7 8 9 10 11 16 19 21 23 24 26 27 28 29 29 30 LCS_GDT V 29 V 29 6 8 16 3 5 6 7 7 8 9 11 16 16 19 21 23 24 26 27 28 29 29 30 LCS_GDT E 30 E 30 6 8 16 4 5 6 7 7 8 9 10 11 14 16 19 22 24 26 27 28 28 28 30 LCS_GDT V 31 V 31 6 8 16 4 5 6 7 7 8 9 10 11 14 16 19 19 21 21 23 25 26 28 30 LCS_GDT R 32 R 32 5 8 16 4 4 6 7 7 8 9 10 12 14 16 19 19 21 21 23 25 26 28 30 LCS_GDT C 33 C 33 5 8 16 4 4 5 7 7 8 9 10 12 14 16 19 19 21 21 23 25 26 28 30 LCS_GDT S 34 S 34 5 7 16 3 4 5 6 7 8 9 10 12 14 16 19 19 21 21 23 25 26 28 30 LCS_GDT D 35 D 35 5 7 16 3 4 5 5 6 7 8 8 10 12 13 15 19 20 21 23 23 26 28 30 LCS_GDT T 36 T 36 5 7 16 3 4 5 6 7 8 8 8 10 14 15 19 19 21 21 23 25 26 28 30 LCS_GDT K 37 K 37 5 6 16 4 4 6 7 7 8 9 10 12 14 16 19 19 21 21 23 25 26 28 30 LCS_GDT Y 38 Y 38 5 6 16 4 4 6 7 7 8 9 10 12 13 16 19 19 21 21 23 25 26 28 30 LCS_GDT T 39 T 39 5 6 16 4 4 6 7 7 8 9 10 12 14 16 19 19 21 21 23 25 26 28 30 LCS_GDT L 40 L 40 5 5 16 4 4 6 7 7 13 13 14 15 15 17 19 19 21 21 23 25 26 28 30 LCS_GDT C 41 C 41 5 5 16 3 3 6 7 7 8 9 14 15 15 17 19 19 21 21 23 25 26 28 30 LCS_AVERAGE LCS_A: 27.60 ( 14.40 21.12 47.29 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 8 9 10 10 13 13 14 16 16 19 21 23 24 26 27 28 29 29 30 GDT PERCENT_AT 12.20 19.51 21.95 24.39 24.39 31.71 31.71 34.15 39.02 39.02 46.34 51.22 56.10 58.54 63.41 65.85 68.29 70.73 70.73 73.17 GDT RMS_LOCAL 0.36 0.56 0.72 1.01 1.01 2.06 2.06 2.38 3.95 3.95 4.21 4.50 4.77 4.91 5.25 5.38 5.55 5.77 5.77 5.99 GDT RMS_ALL_AT 16.49 17.86 17.71 17.84 17.84 15.47 15.47 15.44 11.98 11.98 12.19 12.34 12.64 12.60 12.90 12.81 12.68 13.18 13.18 13.03 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 10 E 10 # possible swapping detected: E 30 E 30 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 7.486 0 0.197 0.522 11.346 0.455 0.303 11.346 LGA Q 2 Q 2 6.989 0 0.337 1.187 14.413 2.727 1.212 14.413 LGA E 3 E 3 4.595 0 0.072 1.071 10.817 14.091 6.263 9.267 LGA T 4 T 4 1.393 0 0.064 1.166 4.486 60.000 44.416 4.486 LGA R 5 R 5 2.033 0 0.070 1.070 9.353 51.364 22.149 9.353 LGA K 6 K 6 0.906 0 0.103 1.469 7.412 67.727 41.212 7.412 LGA K 7 K 7 2.925 0 0.046 0.593 4.642 27.727 17.576 3.670 LGA C 8 C 8 2.990 0 0.053 0.786 4.558 32.727 25.152 4.558 LGA T 9 T 9 0.962 0 0.036 1.010 1.790 78.636 71.169 1.790 LGA E 10 E 10 1.652 0 0.090 0.954 4.083 54.545 36.566 4.083 LGA M 11 M 11 2.059 0 0.083 0.989 8.503 59.091 32.045 8.503 LGA K 12 K 12 1.099 0 0.057 0.547 5.280 65.909 35.960 5.280 LGA K 13 K 13 2.149 0 0.078 0.275 3.597 35.455 42.828 2.126 LGA K 14 K 14 2.580 0 0.042 0.637 9.246 35.909 19.192 9.246 LGA F 15 F 15 2.622 0 0.433 0.768 7.246 23.636 10.909 7.246 LGA K 16 K 16 7.418 0 0.226 1.119 12.057 0.000 0.000 6.973 LGA N 17 N 17 13.416 0 0.322 0.300 16.187 0.000 0.000 16.187 LGA C 18 C 18 14.538 0 0.090 0.697 14.545 0.000 0.000 14.483 LGA E 19 E 19 15.397 0 0.340 1.138 22.169 0.000 0.000 21.297 LGA V 20 V 20 12.087 0 0.044 1.040 14.827 0.000 0.000 7.587 LGA R 21 R 21 16.575 0 0.106 1.514 26.531 0.000 0.000 26.531 LGA C 22 C 22 15.721 0 0.338 0.887 19.392 0.000 0.000 18.250 LGA D 23 D 23 18.329 0 0.079 1.073 22.845 0.000 0.000 22.845 LGA E 24 E 24 19.345 0 0.351 1.219 24.871 0.000 0.000 23.912 LGA S 25 S 25 22.852 0 0.571 0.741 25.506 0.000 0.000 25.506 LGA N 26 N 26 21.598 0 0.556 1.242 22.039 0.000 0.000 20.689 LGA H 27 H 27 19.545 0 0.493 1.082 24.029 0.000 0.000 24.029 LGA C 28 C 28 16.055 0 0.118 0.713 18.593 0.000 0.000 17.885 LGA V 29 V 29 15.451 0 0.177 0.299 16.109 0.000 0.000 14.674 LGA E 30 E 30 19.436 0 0.123 0.144 27.342 0.000 0.000 27.342 LGA V 31 V 31 20.370 0 0.036 1.090 22.179 0.000 0.000 18.235 LGA R 32 R 32 26.131 0 0.147 1.358 34.153 0.000 0.000 32.223 LGA C 33 C 33 28.622 0 0.116 0.187 31.991 0.000 0.000 26.046 LGA S 34 S 34 31.895 0 0.292 0.778 33.003 0.000 0.000 33.003 LGA D 35 D 35 31.209 0 0.034 1.262 34.805 0.000 0.000 34.603 LGA T 36 T 36 24.769 0 0.633 0.834 27.315 0.000 0.000 27.051 LGA K 37 K 37 21.026 0 0.534 1.384 22.716 0.000 0.000 21.039 LGA Y 38 Y 38 13.836 0 0.033 1.378 16.297 0.000 0.000 14.683 LGA T 39 T 39 8.745 0 0.117 0.200 12.689 0.455 0.260 12.689 LGA L 40 L 40 2.588 0 0.572 0.970 6.005 8.636 20.000 3.182 LGA C 41 C 41 7.014 0 0.480 1.342 9.482 0.455 0.260 9.482 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 9.849 9.830 10.514 15.111 10.426 3.193 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 14 2.38 35.976 32.184 0.564 LGA_LOCAL RMSD: 2.382 Number of atoms: 14 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 15.438 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 9.849 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.088428 * X + -0.972694 * Y + -0.214587 * Z + 6.232950 Y_new = -0.933645 * X + -0.156012 * Y + 0.322441 * Z + -6.101752 Z_new = -0.347114 * X + 0.171835 * Y + -0.921946 * Z + 0.387680 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.476365 0.354492 2.957324 [DEG: -84.5895 20.3109 169.4422 ] ZXZ: -2.554392 2.743872 -1.111125 [DEG: -146.3559 157.2123 -63.6628 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS152_1 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS152_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 14 2.38 32.184 9.85 REMARK ---------------------------------------------------------- MOLECULE T0955TS152_1 PFRMAT TS TARGET T0955 MODEL 1 PARENT N/A ATOM 1 CB SER 1 5.834 -9.083 -2.747 1.00 1.75 C ATOM 2 OG SER 1 4.914 -8.003 -2.705 1.00 1.75 O ATOM 4 C SER 1 4.839 -10.609 -1.078 1.00 1.75 C ATOM 5 O SER 1 3.705 -10.870 -0.662 1.00 1.75 O ATOM 8 N SER 1 3.864 -10.468 -3.359 1.00 1.75 N ATOM 10 CA SER 1 5.117 -10.432 -2.561 1.00 1.75 C ATOM 11 N GLN 2 5.917 -10.435 -0.306 1.00 1.24 N ATOM 13 CA GLN 2 5.973 -10.447 1.161 1.00 1.24 C ATOM 14 CB GLN 2 7.421 -10.165 1.567 1.00 1.24 C ATOM 15 CG GLN 2 8.445 -11.168 1.041 1.00 1.24 C ATOM 16 CD GLN 2 9.871 -10.690 1.215 1.00 1.24 C ATOM 17 OE1 GLN 2 10.338 -9.818 0.480 1.00 1.24 O ATOM 18 NE2 GLN 2 10.574 -11.256 2.189 1.00 1.24 N ATOM 21 C GLN 2 5.174 -9.171 1.430 1.00 1.24 C ATOM 22 O GLN 2 4.194 -9.151 2.183 1.00 1.24 O ATOM 23 N GLU 3 5.526 -8.198 0.582 1.00 1.03 N ATOM 25 CA GLU 3 5.017 -6.838 0.496 1.00 1.03 C ATOM 26 CB GLU 3 5.915 -5.996 -0.434 1.00 1.03 C ATOM 27 CG GLU 3 7.366 -5.771 0.056 1.00 1.03 C ATOM 28 CD GLU 3 8.410 -6.641 -0.647 1.00 1.03 C ATOM 29 OE1 GLU 3 8.392 -7.878 -0.466 1.00 1.03 O ATOM 30 OE2 GLU 3 9.259 -6.078 -1.367 1.00 1.03 O ATOM 31 C GLU 3 3.519 -6.670 0.169 1.00 1.03 C ATOM 32 O GLU 3 2.962 -5.649 0.529 1.00 1.03 O ATOM 33 N THR 4 2.894 -7.599 -0.577 1.00 1.62 N ATOM 35 CA THR 4 1.449 -7.490 -0.936 1.00 1.62 C ATOM 36 CB THR 4 1.090 -8.466 -2.110 1.00 1.62 C ATOM 37 OG1 THR 4 2.088 -8.364 -3.133 1.00 1.62 O ATOM 39 CG2 THR 4 -0.279 -8.123 -2.733 1.00 1.62 C ATOM 40 C THR 4 0.405 -7.629 0.219 1.00 1.62 C ATOM 41 O THR 4 -0.430 -6.731 0.386 1.00 1.62 O ATOM 42 N ARG 5 0.479 -8.700 1.025 1.00 1.91 N ATOM 44 CA ARG 5 -0.438 -8.917 2.174 1.00 1.91 C ATOM 45 CB ARG 5 -0.281 -10.338 2.731 1.00 1.91 C ATOM 46 CG ARG 5 -1.063 -11.398 1.951 1.00 1.91 C ATOM 47 CD ARG 5 -0.265 -12.683 1.739 1.00 1.91 C ATOM 48 NE ARG 5 0.705 -12.552 0.648 1.00 1.91 N ATOM 50 CZ ARG 5 1.720 -13.386 0.419 1.00 1.91 C ATOM 51 NH1 ARG 5 2.529 -13.167 -0.607 1.00 1.91 N ATOM 54 NH2 ARG 5 1.939 -14.434 1.205 1.00 1.91 N ATOM 57 C ARG 5 -0.025 -7.858 3.193 1.00 1.91 C ATOM 58 O ARG 5 -0.847 -7.187 3.830 1.00 1.91 O ATOM 59 N LYS 6 1.289 -7.657 3.214 1.00 1.49 N ATOM 61 CA LYS 6 1.961 -6.662 4.016 1.00 1.49 C ATOM 62 CB LYS 6 3.479 -6.893 4.081 1.00 1.49 C ATOM 63 CG LYS 6 3.967 -7.519 5.410 1.00 1.49 C ATOM 64 CD LYS 6 4.158 -9.052 5.358 1.00 1.49 C ATOM 65 CE LYS 6 3.889 -9.719 6.705 1.00 1.49 C ATOM 66 NZ LYS 6 2.456 -9.663 7.121 1.00 1.49 N ATOM 70 C LYS 6 1.581 -5.258 3.526 1.00 1.49 C ATOM 71 O LYS 6 1.617 -4.340 4.319 1.00 1.49 O ATOM 72 N LYS 7 1.089 -5.127 2.273 1.00 1.37 N ATOM 74 CA LYS 7 0.760 -3.825 1.612 1.00 1.37 C ATOM 75 CB LYS 7 -0.042 -4.020 0.320 1.00 1.37 C ATOM 76 CG LYS 7 0.743 -3.763 -0.957 1.00 1.37 C ATOM 77 CD LYS 7 -0.095 -4.105 -2.184 1.00 1.37 C ATOM 78 CE LYS 7 0.704 -4.000 -3.479 1.00 1.37 C ATOM 79 NZ LYS 7 1.759 -5.048 -3.616 1.00 1.37 N ATOM 83 C LYS 7 0.033 -2.835 2.511 1.00 1.37 C ATOM 84 O LYS 7 0.173 -1.617 2.327 1.00 1.37 O ATOM 85 N CYS 8 -0.760 -3.348 3.455 1.00 1.41 N ATOM 87 CA CYS 8 -1.417 -2.481 4.441 1.00 1.41 C ATOM 88 CB CYS 8 -2.433 -3.288 5.260 1.00 1.41 C ATOM 89 SG CYS 8 -1.778 -4.788 6.036 1.00 1.41 S ATOM 90 C CYS 8 -0.288 -1.921 5.350 1.00 1.41 C ATOM 91 O CYS 8 -0.134 -0.695 5.478 1.00 1.41 O ATOM 92 N THR 9 0.563 -2.830 5.861 1.00 1.46 N ATOM 94 CA THR 9 1.728 -2.495 6.714 1.00 1.46 C ATOM 95 CB THR 9 2.300 -3.738 7.485 1.00 1.46 C ATOM 96 OG1 THR 9 2.676 -4.768 6.564 1.00 1.46 O ATOM 98 CG2 THR 9 1.275 -4.284 8.473 1.00 1.46 C ATOM 99 C THR 9 2.845 -1.821 5.889 1.00 1.46 C ATOM 100 O THR 9 3.510 -0.901 6.371 1.00 1.46 O ATOM 101 N GLU 10 3.004 -2.281 4.639 1.00 1.56 N ATOM 103 CA GLU 10 4.003 -1.801 3.670 1.00 1.56 C ATOM 104 CB GLU 10 4.237 -2.824 2.539 1.00 1.56 C ATOM 105 CG GLU 10 5.684 -3.402 2.459 1.00 1.56 C ATOM 106 CD GLU 10 6.006 -4.533 3.460 1.00 1.56 C ATOM 107 OE1 GLU 10 6.701 -5.491 3.068 1.00 1.56 O ATOM 108 OE2 GLU 10 5.582 -4.467 4.636 1.00 1.56 O ATOM 109 C GLU 10 3.810 -0.374 3.141 1.00 1.56 C ATOM 110 O GLU 10 4.798 0.279 2.818 1.00 1.56 O ATOM 111 N MET 11 2.552 0.076 3.003 1.00 1.77 N ATOM 113 CA MET 11 2.215 1.445 2.552 1.00 1.77 C ATOM 114 CG MET 11 0.274 2.588 1.260 1.00 1.77 C ATOM 115 SD MET 11 -1.517 2.686 1.045 1.00 1.77 S ATOM 116 CE MET 11 -1.744 1.711 -0.450 1.00 1.77 C ATOM 117 C MET 11 2.695 2.383 3.684 1.00 1.77 C ATOM 118 O MET 11 3.265 3.452 3.418 1.00 1.77 O ATOM 119 CB MET 11 0.699 1.569 2.328 1.00 1.77 C ATOM 120 N LYS 12 2.526 1.911 4.930 1.00 1.59 N ATOM 122 CA LYS 12 2.958 2.613 6.154 1.00 1.59 C ATOM 123 CB LYS 12 2.425 1.885 7.399 1.00 1.59 C ATOM 124 CG LYS 12 2.145 2.780 8.613 1.00 1.59 C ATOM 125 CD LYS 12 1.623 1.970 9.788 1.00 1.59 C ATOM 126 CE LYS 12 1.346 2.857 10.991 1.00 1.59 C ATOM 127 NZ LYS 12 0.834 2.076 12.150 1.00 1.59 N ATOM 131 C LYS 12 4.506 2.608 6.128 1.00 1.59 C ATOM 132 O LYS 12 5.135 3.605 6.490 1.00 1.59 O ATOM 133 N LYS 13 5.078 1.476 5.682 1.00 2.00 N ATOM 135 CA LYS 13 6.533 1.242 5.524 1.00 2.00 C ATOM 136 CB LYS 13 6.854 -0.257 5.394 1.00 2.00 C ATOM 137 CG LYS 13 6.671 -1.035 6.696 1.00 2.00 C ATOM 138 CD LYS 13 7.157 -2.472 6.576 1.00 2.00 C ATOM 139 CE LYS 13 6.980 -3.247 7.878 1.00 2.00 C ATOM 140 NZ LYS 13 7.882 -2.786 8.978 1.00 2.00 N ATOM 144 C LYS 13 7.164 2.039 4.366 1.00 2.00 C ATOM 145 O LYS 13 8.322 2.443 4.462 1.00 2.00 O ATOM 146 N LYS 14 6.400 2.248 3.279 1.00 2.45 N ATOM 148 CA LYS 14 6.835 3.007 2.079 1.00 2.45 C ATOM 149 CB LYS 14 5.705 3.108 1.044 1.00 2.45 C ATOM 150 CG LYS 14 5.447 1.856 0.223 1.00 2.45 C ATOM 151 CD LYS 14 4.268 2.071 -0.713 1.00 2.45 C ATOM 152 CE LYS 14 3.924 0.808 -1.480 1.00 2.45 C ATOM 153 NZ LYS 14 2.772 1.013 -2.399 1.00 2.45 N ATOM 157 C LYS 14 7.221 4.412 2.556 1.00 2.45 C ATOM 158 O LYS 14 8.169 5.013 2.041 1.00 2.45 O ATOM 159 N PHE 15 6.454 4.910 3.537 1.00 2.10 N ATOM 161 CA PHE 15 6.681 6.203 4.200 1.00 2.10 C ATOM 162 CB PHE 15 5.446 6.624 5.034 1.00 2.10 C ATOM 163 CG PHE 15 4.323 7.277 4.229 1.00 2.10 C ATOM 164 CD1 PHE 15 3.256 6.504 3.711 1.00 2.10 C ATOM 165 CD2 PHE 15 4.301 8.678 4.019 1.00 2.10 C ATOM 166 CE1 PHE 15 2.187 7.110 2.997 1.00 2.10 C ATOM 167 CE2 PHE 15 3.239 9.299 3.306 1.00 2.10 C ATOM 168 CZ PHE 15 2.179 8.512 2.794 1.00 2.10 C ATOM 169 C PHE 15 7.936 6.159 5.097 1.00 2.10 C ATOM 170 O PHE 15 8.654 7.157 5.193 1.00 2.10 O ATOM 171 N LYS 16 8.176 5.001 5.740 1.00 2.40 N ATOM 173 CA LYS 16 9.320 4.784 6.659 1.00 2.40 C ATOM 174 CB LYS 16 8.834 4.665 8.128 1.00 2.40 C ATOM 175 CG LYS 16 7.707 3.652 8.416 1.00 2.40 C ATOM 176 CD LYS 16 7.335 3.643 9.889 1.00 2.40 C ATOM 177 CE LYS 16 6.224 2.645 10.173 1.00 2.40 C ATOM 178 NZ LYS 16 5.849 2.626 11.613 1.00 2.40 N ATOM 182 C LYS 16 10.357 3.670 6.343 1.00 2.40 C ATOM 183 O LYS 16 11.523 3.985 6.073 1.00 2.40 O ATOM 184 N ASN 17 9.926 2.398 6.377 1.00 3.13 N ATOM 186 CA ASN 17 10.787 1.212 6.156 1.00 3.13 C ATOM 187 CB ASN 17 10.254 0.005 6.959 1.00 3.13 C ATOM 188 CG ASN 17 10.341 0.211 8.467 1.00 3.13 C ATOM 189 OD1 ASN 17 11.339 -0.140 9.098 1.00 3.13 O ATOM 190 ND2 ASN 17 9.283 0.767 9.052 1.00 3.13 N ATOM 193 C ASN 17 11.159 0.761 4.722 1.00 3.13 C ATOM 194 O ASN 17 12.109 1.298 4.140 1.00 3.13 O ATOM 195 N CYS 18 10.409 -0.208 4.172 1.00 3.38 N ATOM 197 CA CYS 18 10.663 -0.812 2.853 1.00 3.38 C ATOM 198 CB CYS 18 10.489 -2.339 2.949 1.00 3.38 C ATOM 199 SG CYS 18 8.901 -2.868 3.606 1.00 3.38 S ATOM 200 C CYS 18 9.929 -0.304 1.600 1.00 3.38 C ATOM 201 O CYS 18 8.944 0.440 1.682 1.00 3.38 O ATOM 202 N GLU 19 10.461 -0.746 0.451 1.00 3.16 N ATOM 204 CA GLU 19 10.003 -0.497 -0.929 1.00 3.16 C ATOM 205 CB GLU 19 11.190 -0.225 -1.857 1.00 3.16 C ATOM 206 CG GLU 19 11.911 1.096 -1.604 1.00 3.16 C ATOM 207 CD GLU 19 13.078 1.317 -2.549 1.00 3.16 C ATOM 208 OE1 GLU 19 14.206 0.904 -2.210 1.00 3.16 O ATOM 209 OE2 GLU 19 12.866 1.908 -3.630 1.00 3.16 O ATOM 210 C GLU 19 9.332 -1.812 -1.342 1.00 3.16 C ATOM 211 O GLU 19 9.721 -2.869 -0.824 1.00 3.16 O ATOM 212 N VAL 20 8.348 -1.775 -2.252 1.00 4.07 N ATOM 214 CA VAL 20 7.656 -3.019 -2.637 1.00 4.07 C ATOM 215 CB VAL 20 6.076 -2.830 -2.664 1.00 4.07 C ATOM 216 CG1 VAL 20 5.557 -2.531 -1.261 1.00 4.07 C ATOM 217 CG2 VAL 20 5.650 -1.685 -3.609 1.00 4.07 C ATOM 218 C VAL 20 8.179 -3.601 -3.973 1.00 4.07 C ATOM 219 O VAL 20 8.173 -2.947 -5.024 1.00 4.07 O ATOM 220 N ARG 21 8.702 -4.828 -3.838 1.00 3.54 N ATOM 222 CA ARG 21 9.302 -5.681 -4.881 1.00 3.54 C ATOM 223 CB ARG 21 10.836 -5.712 -4.780 1.00 3.54 C ATOM 224 CG ARG 21 11.510 -4.427 -5.256 1.00 3.54 C ATOM 225 CD ARG 21 12.999 -4.615 -5.492 1.00 3.54 C ATOM 226 NE ARG 21 13.646 -3.382 -5.949 1.00 3.54 N ATOM 228 CZ ARG 21 14.943 -3.254 -6.233 1.00 3.54 C ATOM 229 NH1 ARG 21 15.410 -2.082 -6.639 1.00 3.54 N ATOM 232 NH2 ARG 21 15.778 -4.283 -6.117 1.00 3.54 N ATOM 235 C ARG 21 8.731 -7.092 -4.738 1.00 3.54 C ATOM 236 O ARG 21 8.392 -7.490 -3.620 1.00 3.54 O ATOM 237 N CYS 22 8.653 -7.851 -5.839 1.00 4.09 N ATOM 239 CA CYS 22 8.105 -9.219 -5.812 1.00 4.09 C ATOM 240 CB CYS 22 7.149 -9.437 -6.996 1.00 4.09 C ATOM 241 SG CYS 22 7.917 -9.373 -8.639 1.00 4.09 S ATOM 242 C CYS 22 9.255 -10.251 -5.814 1.00 4.09 C ATOM 243 O CYS 22 9.564 -10.891 -6.829 1.00 4.09 O ATOM 244 N ASP 23 9.922 -10.320 -4.650 1.00 3.01 N ATOM 246 CA ASP 23 11.064 -11.205 -4.342 1.00 3.01 C ATOM 247 CB ASP 23 12.330 -10.742 -5.106 1.00 3.01 C ATOM 248 CG ASP 23 13.314 -11.880 -5.386 1.00 3.01 C ATOM 249 OD1 ASP 23 14.233 -12.094 -4.566 1.00 3.01 O ATOM 250 OD2 ASP 23 13.176 -12.547 -6.435 1.00 3.01 O ATOM 251 C ASP 23 11.283 -11.079 -2.814 1.00 3.01 C ATOM 252 O ASP 23 10.375 -10.637 -2.099 1.00 3.01 O ATOM 253 N GLU 24 12.472 -11.475 -2.333 1.00 3.10 N ATOM 255 CA GLU 24 12.868 -11.397 -0.914 1.00 3.10 C ATOM 256 CB GLU 24 13.601 -12.691 -0.510 1.00 3.10 C ATOM 257 CG GLU 24 13.547 -13.040 0.984 1.00 3.10 C ATOM 258 CD GLU 24 14.287 -14.323 1.312 1.00 3.10 C ATOM 259 OE1 GLU 24 15.499 -14.253 1.609 1.00 3.10 O ATOM 260 OE2 GLU 24 13.658 -15.402 1.274 1.00 3.10 O ATOM 261 C GLU 24 13.771 -10.137 -0.802 1.00 3.10 C ATOM 262 O GLU 24 14.808 -10.139 -0.119 1.00 3.10 O ATOM 263 N SER 25 13.313 -9.064 -1.463 1.00 3.60 N ATOM 265 CA SER 25 13.995 -7.761 -1.551 1.00 3.60 C ATOM 266 CB SER 25 13.889 -7.250 -2.993 1.00 3.60 C ATOM 267 OG SER 25 14.737 -6.135 -3.221 1.00 3.60 O ATOM 269 C SER 25 13.456 -6.686 -0.587 1.00 3.60 C ATOM 270 O SER 25 12.352 -6.831 -0.047 1.00 3.60 O ATOM 271 N ASN 26 14.247 -5.608 -0.408 1.00 3.94 N ATOM 273 CA ASN 26 13.971 -4.417 0.445 1.00 3.94 C ATOM 274 CB ASN 26 13.115 -3.380 -0.320 1.00 3.94 C ATOM 275 CG ASN 26 13.869 -2.720 -1.466 1.00 3.94 C ATOM 276 OD1 ASN 26 14.493 -1.670 -1.292 1.00 3.94 O ATOM 277 ND2 ASN 26 13.801 -3.323 -2.648 1.00 3.94 N ATOM 280 C ASN 26 13.382 -4.668 1.847 1.00 3.94 C ATOM 281 O ASN 26 12.174 -4.903 1.966 1.00 3.94 O ATOM 282 N HIS 27 14.243 -4.606 2.885 1.00 3.90 N ATOM 284 CA HIS 27 13.924 -4.820 4.330 1.00 3.90 C ATOM 285 CG HIS 27 13.650 -3.406 6.460 1.00 3.90 C ATOM 286 CD2 HIS 27 12.809 -3.414 7.523 1.00 3.90 C ATOM 287 ND1 HIS 27 14.917 -3.242 6.979 1.00 3.90 N ATOM 289 CE1 HIS 27 14.847 -3.154 8.296 1.00 3.90 C ATOM 290 NE2 HIS 27 13.579 -3.256 8.651 1.00 3.90 N ATOM 292 C HIS 27 12.953 -6.005 4.545 1.00 3.90 C ATOM 293 O HIS 27 13.360 -7.071 5.021 1.00 3.90 O ATOM 294 CB HIS 27 13.381 -3.520 4.985 1.00 3.90 C ATOM 295 N CYS 28 11.683 -5.782 4.163 1.00 3.50 N ATOM 297 CA CYS 28 10.550 -6.730 4.186 1.00 3.50 C ATOM 298 CB CYS 28 10.467 -7.484 2.847 1.00 3.50 C ATOM 299 SG CYS 28 11.973 -8.393 2.424 1.00 3.50 S ATOM 300 C CYS 28 10.313 -7.726 5.330 1.00 3.50 C ATOM 301 O CYS 28 11.258 -8.256 5.926 1.00 3.50 O ATOM 302 N VAL 29 9.020 -7.951 5.607 1.00 3.36 N ATOM 304 CA VAL 29 8.504 -8.905 6.605 1.00 3.36 C ATOM 305 CB VAL 29 7.350 -8.280 7.477 1.00 3.36 C ATOM 306 CG1 VAL 29 7.016 -9.186 8.675 1.00 3.36 C ATOM 307 CG2 VAL 29 7.741 -6.892 7.981 1.00 3.36 C ATOM 308 C VAL 29 7.953 -9.953 5.608 1.00 3.36 C ATOM 309 O VAL 29 7.309 -9.575 4.618 1.00 3.36 O ATOM 310 N GLU 30 8.176 -11.245 5.876 1.00 3.20 N ATOM 312 CA GLU 30 7.771 -12.300 4.935 1.00 3.20 C ATOM 313 CB GLU 30 8.984 -13.205 4.614 1.00 3.20 C ATOM 314 CG GLU 30 8.892 -14.072 3.343 1.00 3.20 C ATOM 315 CD GLU 30 10.110 -14.954 3.148 1.00 3.20 C ATOM 316 OE1 GLU 30 10.106 -16.097 3.651 1.00 3.20 O ATOM 317 OE2 GLU 30 11.071 -14.506 2.488 1.00 3.20 O ATOM 318 C GLU 30 6.543 -13.146 5.310 1.00 3.20 C ATOM 319 O GLU 30 6.440 -13.697 6.414 1.00 3.20 O ATOM 320 N VAL 31 5.615 -13.182 4.344 1.00 2.94 N ATOM 322 CA VAL 31 4.349 -13.930 4.358 1.00 2.94 C ATOM 323 CB VAL 31 3.082 -12.949 4.505 1.00 2.94 C ATOM 324 CG1 VAL 31 3.001 -11.908 3.374 1.00 2.94 C ATOM 325 CG2 VAL 31 1.775 -13.741 4.657 1.00 2.94 C ATOM 326 C VAL 31 4.424 -14.685 3.003 1.00 2.94 C ATOM 327 O VAL 31 4.708 -14.058 1.971 1.00 2.94 O ATOM 328 N ARG 32 4.242 -16.012 3.016 1.00 2.53 N ATOM 330 CA ARG 32 4.324 -16.807 1.778 1.00 2.53 C ATOM 331 CB ARG 32 5.391 -17.909 1.907 1.00 2.53 C ATOM 332 CG ARG 32 6.833 -17.405 2.007 1.00 2.53 C ATOM 333 CD ARG 32 7.827 -18.539 2.253 1.00 2.53 C ATOM 334 NE ARG 32 7.956 -19.448 1.109 1.00 2.53 N ATOM 336 CZ ARG 32 8.753 -20.516 1.062 1.00 2.53 C ATOM 337 NH1 ARG 32 9.523 -20.848 2.094 1.00 2.53 N ATOM 340 NH2 ARG 32 8.781 -21.263 -0.034 1.00 2.53 N ATOM 343 C ARG 32 3.004 -17.414 1.282 1.00 2.53 C ATOM 344 O ARG 32 2.302 -18.113 2.027 1.00 2.53 O ATOM 345 N CYS 33 2.671 -17.083 0.026 1.00 3.72 N ATOM 347 CA CYS 33 1.483 -17.562 -0.701 1.00 3.72 C ATOM 348 CB CYS 33 0.441 -16.445 -0.870 1.00 3.72 C ATOM 349 SG CYS 33 -0.433 -16.002 0.649 1.00 3.72 S ATOM 350 C CYS 33 1.971 -18.039 -2.076 1.00 3.72 C ATOM 351 O CYS 33 1.634 -19.144 -2.515 1.00 3.72 O ATOM 352 N SER 34 2.768 -17.177 -2.727 1.00 4.04 N ATOM 354 CA SER 34 3.363 -17.391 -4.060 1.00 4.04 C ATOM 355 CB SER 34 2.569 -16.607 -5.123 1.00 4.04 C ATOM 356 OG SER 34 2.997 -16.924 -6.438 1.00 4.04 O ATOM 358 C SER 34 4.814 -16.881 -4.031 1.00 4.04 C ATOM 359 O SER 34 5.575 -17.107 -4.985 1.00 4.04 O ATOM 360 N ASP 35 5.179 -16.209 -2.922 1.00 4.25 N ATOM 362 CA ASP 35 6.500 -15.580 -2.632 1.00 4.25 C ATOM 363 CB ASP 35 7.697 -16.535 -2.867 1.00 4.25 C ATOM 364 CG ASP 35 7.696 -17.731 -1.922 1.00 4.25 C ATOM 365 OD1 ASP 35 8.342 -17.648 -0.855 1.00 4.25 O ATOM 366 OD2 ASP 35 7.068 -18.761 -2.254 1.00 4.25 O ATOM 367 C ASP 35 6.720 -14.253 -3.380 1.00 4.25 C ATOM 368 O ASP 35 7.373 -13.342 -2.852 1.00 4.25 O ATOM 369 N THR 36 6.160 -14.160 -4.596 1.00 4.52 N ATOM 371 CA THR 36 6.245 -12.973 -5.470 1.00 4.52 C ATOM 372 CB THR 36 6.843 -13.324 -6.867 1.00 4.52 C ATOM 373 OG1 THR 36 6.092 -14.389 -7.464 1.00 4.52 O ATOM 375 CG2 THR 36 8.303 -13.751 -6.741 1.00 4.52 C ATOM 376 C THR 36 4.856 -12.327 -5.647 1.00 4.52 C ATOM 377 O THR 36 4.758 -11.106 -5.824 1.00 4.52 O ATOM 378 N LYS 37 3.799 -13.153 -5.539 1.00 4.33 N ATOM 380 CA LYS 37 2.359 -12.788 -5.656 1.00 4.33 C ATOM 381 CB LYS 37 1.731 -12.603 -4.252 1.00 4.33 C ATOM 382 CG LYS 37 0.394 -13.323 -4.040 1.00 4.33 C ATOM 383 CD LYS 37 -0.203 -12.997 -2.682 1.00 4.33 C ATOM 384 CE LYS 37 -1.554 -13.667 -2.498 1.00 4.33 C ATOM 385 NZ LYS 37 -2.153 -13.356 -1.170 1.00 4.33 N ATOM 389 C LYS 37 1.968 -11.619 -6.603 1.00 4.33 C ATOM 390 O LYS 37 1.491 -11.864 -7.716 1.00 4.33 O ATOM 391 N TYR 38 2.178 -10.375 -6.144 1.00 3.93 N ATOM 393 CA TYR 38 1.860 -9.148 -6.897 1.00 3.93 C ATOM 394 CB TYR 38 0.729 -8.354 -6.188 1.00 3.93 C ATOM 395 CG TYR 38 -0.084 -7.367 -7.043 1.00 3.93 C ATOM 396 CD1 TYR 38 -1.268 -7.775 -7.706 1.00 3.93 C ATOM 397 CE1 TYR 38 -2.040 -6.857 -8.471 1.00 3.93 C ATOM 398 CD2 TYR 38 0.308 -6.010 -7.166 1.00 3.93 C ATOM 399 CE2 TYR 38 -0.459 -5.086 -7.928 1.00 3.93 C ATOM 400 CZ TYR 38 -1.628 -5.518 -8.574 1.00 3.93 C ATOM 401 OH TYR 38 -2.371 -4.625 -9.312 1.00 3.93 O ATOM 403 C TYR 38 3.115 -8.271 -7.027 1.00 3.93 C ATOM 404 O TYR 38 3.929 -8.204 -6.096 1.00 3.93 O ATOM 405 N THR 39 3.259 -7.620 -8.192 1.00 4.34 N ATOM 407 CA THR 39 4.390 -6.730 -8.509 1.00 4.34 C ATOM 408 CB THR 39 5.145 -7.212 -9.798 1.00 4.34 C ATOM 409 OG1 THR 39 5.252 -8.641 -9.784 1.00 4.34 O ATOM 411 CG2 THR 39 6.558 -6.613 -9.889 1.00 4.34 C ATOM 412 C THR 39 3.895 -5.278 -8.699 1.00 4.34 C ATOM 413 O THR 39 2.872 -5.038 -9.358 1.00 4.34 O ATOM 414 N LEU 40 4.614 -4.336 -8.074 1.00 4.31 N ATOM 416 CA LEU 40 4.339 -2.889 -8.140 1.00 4.31 C ATOM 417 CB LEU 40 3.838 -2.361 -6.768 1.00 4.31 C ATOM 418 CG LEU 40 3.066 -1.032 -6.580 1.00 4.31 C ATOM 419 CD1 LEU 40 2.084 -1.181 -5.434 1.00 4.31 C ATOM 420 CD2 LEU 40 4.002 0.164 -6.332 1.00 4.31 C ATOM 421 C LEU 40 5.663 -2.206 -8.546 1.00 4.31 C ATOM 422 O LEU 40 5.664 -1.037 -8.952 1.00 4.31 O ATOM 423 N CYS 41 6.764 -2.972 -8.472 1.00 4.51 N ATOM 425 CA CYS 41 8.129 -2.519 -8.801 1.00 4.51 C ATOM 426 CB CYS 41 9.156 -3.341 -8.008 1.00 4.51 C ATOM 427 SG CYS 41 9.199 -5.112 -8.391 1.00 4.51 S ATOM 428 C CYS 41 8.452 -2.570 -10.301 1.00 4.51 C ATOM 429 O CYS 41 7.938 -3.482 -10.983 1.00 4.51 O ATOM 430 OXT CYS 41 9.206 -1.692 -10.771 1.00 4.51 O TER END