####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS257_1 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS257_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 1 - 19 4.30 29.31 LCS_AVERAGE: 41.34 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 1 - 17 1.81 30.98 LCS_AVERAGE: 29.98 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 2 - 16 0.91 31.89 LCS_AVERAGE: 23.02 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 17 19 3 3 4 10 16 16 17 17 17 17 18 18 18 18 18 18 19 19 19 20 LCS_GDT Q 2 Q 2 15 17 19 9 12 14 15 16 16 17 17 17 17 18 18 18 18 18 18 19 19 19 20 LCS_GDT E 3 E 3 15 17 19 10 12 14 15 16 16 17 17 17 17 18 18 18 18 18 18 19 19 19 20 LCS_GDT T 4 T 4 15 17 19 10 12 14 15 16 16 17 17 17 17 18 18 18 18 18 18 19 19 19 20 LCS_GDT R 5 R 5 15 17 19 10 12 14 15 16 16 17 17 17 17 18 18 18 18 18 18 19 19 19 20 LCS_GDT K 6 K 6 15 17 19 10 12 14 15 16 16 17 17 17 17 18 18 18 18 18 18 19 19 19 20 LCS_GDT K 7 K 7 15 17 19 10 12 14 15 16 16 17 17 17 17 18 18 18 18 18 18 19 19 19 20 LCS_GDT C 8 C 8 15 17 19 10 12 14 15 16 16 17 17 17 17 18 18 18 18 18 18 19 19 19 20 LCS_GDT T 9 T 9 15 17 19 10 12 14 15 16 16 17 17 17 17 18 18 18 18 18 18 19 19 19 20 LCS_GDT E 10 E 10 15 17 19 10 12 14 15 16 16 17 17 17 17 18 18 18 18 18 18 19 19 19 20 LCS_GDT M 11 M 11 15 17 19 10 12 14 15 16 16 17 17 17 17 18 18 18 18 18 18 19 19 19 20 LCS_GDT K 12 K 12 15 17 19 10 12 14 15 16 16 17 17 17 17 18 18 18 18 18 18 19 19 19 20 LCS_GDT K 13 K 13 15 17 19 5 12 14 15 16 16 17 17 17 17 18 18 18 18 18 18 19 19 19 20 LCS_GDT K 14 K 14 15 17 19 6 12 14 15 16 16 17 17 17 17 18 18 18 18 18 18 19 19 19 20 LCS_GDT F 15 F 15 15 17 19 6 12 14 15 16 16 17 17 17 17 18 18 18 18 18 18 19 19 19 20 LCS_GDT K 16 K 16 15 17 19 4 5 12 15 16 16 17 17 17 17 18 18 18 18 18 18 19 19 19 20 LCS_GDT N 17 N 17 3 17 19 3 3 4 6 10 15 17 17 17 17 18 18 18 18 18 18 19 19 19 20 LCS_GDT C 18 C 18 6 7 19 3 4 6 7 7 8 8 11 11 15 18 18 18 18 18 18 19 19 19 20 LCS_GDT E 19 E 19 6 7 19 4 5 6 7 7 8 8 10 11 12 13 14 16 17 17 18 19 19 19 20 LCS_GDT V 20 V 20 6 7 16 4 5 6 7 7 8 8 10 11 12 13 14 16 16 16 16 17 17 19 20 LCS_GDT R 21 R 21 6 7 16 4 5 6 7 7 8 8 10 11 12 13 14 16 16 16 16 17 17 18 18 LCS_GDT C 22 C 22 6 7 16 4 5 6 7 7 8 8 8 9 11 13 14 16 16 16 16 17 17 18 18 LCS_GDT D 23 D 23 6 7 16 3 5 6 7 7 8 8 12 13 14 14 14 16 16 16 16 17 17 18 18 LCS_GDT E 24 E 24 4 11 16 3 3 4 8 9 10 11 12 13 14 14 14 16 16 16 16 17 17 18 18 LCS_GDT S 25 S 25 4 11 16 3 3 4 5 8 11 12 12 13 14 14 14 16 16 16 16 17 17 18 18 LCS_GDT N 26 N 26 9 11 16 4 6 9 10 10 11 12 12 13 14 14 14 16 16 16 16 17 17 18 18 LCS_GDT H 27 H 27 9 11 16 4 8 9 10 10 11 12 12 13 14 14 14 16 16 16 16 17 17 18 18 LCS_GDT C 28 C 28 9 11 16 4 8 9 10 10 11 12 12 13 14 14 14 16 16 16 16 17 17 18 18 LCS_GDT V 29 V 29 9 11 16 4 8 9 10 10 11 12 12 13 14 14 14 14 15 15 15 17 17 17 18 LCS_GDT E 30 E 30 9 11 16 4 8 9 10 10 11 12 12 13 14 14 14 14 15 15 15 16 16 16 18 LCS_GDT V 31 V 31 9 11 16 4 8 9 10 10 11 12 12 13 14 14 14 14 15 15 15 16 16 16 16 LCS_GDT R 32 R 32 9 11 16 4 8 9 10 10 11 12 12 13 14 14 14 14 15 15 15 16 16 16 16 LCS_GDT C 33 C 33 9 11 16 4 8 9 10 10 11 12 12 13 14 14 14 14 15 15 15 16 16 16 16 LCS_GDT S 34 S 34 9 11 16 4 8 9 10 10 11 12 12 13 14 14 14 14 15 15 15 16 16 16 16 LCS_GDT D 35 D 35 3 11 16 3 3 6 10 10 11 12 12 13 14 14 14 14 15 15 15 16 16 16 16 LCS_GDT T 36 T 36 3 11 16 3 3 3 5 6 11 12 12 13 14 14 14 14 15 15 15 16 16 16 16 LCS_GDT K 37 K 37 5 6 16 4 5 5 5 5 6 6 6 7 8 9 9 14 15 15 15 16 16 16 16 LCS_GDT Y 38 Y 38 5 6 16 4 5 5 5 5 6 6 6 7 8 9 9 9 10 10 13 16 16 16 16 LCS_GDT T 39 T 39 5 6 10 4 5 5 5 5 6 6 6 7 8 9 9 9 10 10 10 10 10 11 11 LCS_GDT L 40 L 40 5 6 10 4 5 5 5 5 6 6 6 7 8 9 9 9 10 10 10 10 10 11 11 LCS_GDT C 41 C 41 5 6 10 4 5 5 5 5 6 6 6 7 8 9 9 9 10 10 10 10 10 11 11 LCS_AVERAGE LCS_A: 31.45 ( 23.02 29.98 41.34 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 12 14 15 16 16 17 17 17 17 18 18 18 18 18 18 19 19 19 20 GDT PERCENT_AT 24.39 29.27 34.15 36.59 39.02 39.02 41.46 41.46 41.46 41.46 43.90 43.90 43.90 43.90 43.90 43.90 46.34 46.34 46.34 48.78 GDT RMS_LOCAL 0.34 0.49 0.67 0.91 1.17 1.17 1.81 1.81 1.81 1.81 2.91 2.91 2.91 2.91 2.91 2.91 4.30 4.30 4.30 5.55 GDT RMS_ALL_AT 32.48 32.61 32.16 31.89 31.68 31.68 30.98 30.98 30.98 30.98 30.18 30.18 30.18 30.18 30.18 30.18 29.31 29.31 29.31 28.16 # Checking swapping # possible swapping detected: E 10 E 10 # possible swapping detected: F 15 F 15 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 2.195 0 0.645 0.689 3.579 36.364 29.091 3.579 LGA Q 2 Q 2 2.225 0 0.226 1.172 8.148 51.364 24.848 8.148 LGA E 3 E 3 0.987 0 0.057 1.219 6.605 77.727 46.263 3.802 LGA T 4 T 4 1.091 0 0.024 1.299 4.050 73.636 59.481 4.050 LGA R 5 R 5 1.073 0 0.045 1.032 4.286 73.636 56.529 4.286 LGA K 6 K 6 0.547 0 0.036 1.223 5.941 81.818 52.323 5.657 LGA K 7 K 7 0.515 0 0.035 0.641 2.496 81.818 62.424 2.043 LGA C 8 C 8 1.029 0 0.043 0.762 4.191 69.545 58.182 4.191 LGA T 9 T 9 1.022 0 0.017 0.140 1.705 73.636 70.390 1.053 LGA E 10 E 10 0.746 0 0.017 0.758 3.501 81.818 59.394 3.501 LGA M 11 M 11 0.775 0 0.066 1.001 4.339 73.636 61.364 4.339 LGA K 12 K 12 2.009 0 0.044 0.821 6.350 41.364 29.899 6.350 LGA K 13 K 13 2.390 0 0.033 0.585 4.175 41.364 28.283 2.847 LGA K 14 K 14 1.119 0 0.024 0.115 1.855 73.636 67.677 1.782 LGA F 15 F 15 0.705 0 0.442 1.444 6.787 58.182 29.917 6.787 LGA K 16 K 16 1.496 0 0.652 1.163 7.852 49.091 26.667 7.852 LGA N 17 N 17 5.025 0 0.581 1.181 9.153 6.818 6.136 3.876 LGA C 18 C 18 10.778 0 0.608 0.780 13.532 0.000 0.000 8.734 LGA E 19 E 19 16.797 0 0.267 1.157 23.141 0.000 0.000 23.141 LGA V 20 V 20 19.554 0 0.078 1.079 22.585 0.000 0.000 20.968 LGA R 21 R 21 25.615 0 0.057 0.697 31.181 0.000 0.000 28.548 LGA C 22 C 22 31.361 0 0.680 1.132 34.552 0.000 0.000 31.781 LGA D 23 D 23 36.348 0 0.668 1.031 37.255 0.000 0.000 35.038 LGA E 24 E 24 37.096 0 0.188 0.260 40.129 0.000 0.000 40.129 LGA S 25 S 25 41.238 0 0.577 0.545 42.457 0.000 0.000 42.457 LGA N 26 N 26 39.523 0 0.640 0.995 40.769 0.000 0.000 36.951 LGA H 27 H 27 37.523 0 0.505 1.093 41.330 0.000 0.000 41.253 LGA C 28 C 28 36.896 0 0.080 0.704 39.786 0.000 0.000 39.786 LGA V 29 V 29 35.823 0 0.125 0.287 36.085 0.000 0.000 34.372 LGA E 30 E 30 36.817 0 0.046 0.672 38.616 0.000 0.000 38.616 LGA V 31 V 31 35.648 0 0.047 1.091 36.678 0.000 0.000 33.777 LGA R 32 R 32 36.985 0 0.225 1.272 42.734 0.000 0.000 42.734 LGA C 33 C 33 36.218 0 0.195 0.769 37.560 0.000 0.000 36.863 LGA S 34 S 34 37.512 0 0.505 0.712 37.963 0.000 0.000 37.337 LGA D 35 D 35 39.721 0 0.636 1.106 42.804 0.000 0.000 39.541 LGA T 36 T 36 42.271 0 0.639 1.414 44.801 0.000 0.000 40.194 LGA K 37 K 37 48.071 0 0.646 1.732 52.233 0.000 0.000 48.972 LGA Y 38 Y 38 52.691 0 0.046 1.214 54.012 0.000 0.000 46.668 LGA T 39 T 39 58.306 0 0.147 0.974 61.010 0.000 0.000 60.497 LGA L 40 L 40 60.638 0 0.137 1.206 63.771 0.000 0.000 56.233 LGA C 41 C 41 67.972 0 0.483 1.321 71.101 0.000 0.000 69.581 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 18.815 18.789 19.277 25.499 18.753 6.031 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 17 1.81 37.805 36.978 0.889 LGA_LOCAL RMSD: 1.813 Number of atoms: 17 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 30.980 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 18.815 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.141088 * X + -0.872330 * Y + -0.468118 * Z + 6.292878 Y_new = -0.968850 * X + 0.024453 * Y + 0.246438 * Z + 17.403524 Z_new = -0.203528 * X + 0.488306 * Y + -0.848607 * Z + 7.717294 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.715404 0.204961 2.619442 [DEG: -98.2854 11.7434 150.0830 ] ZXZ: -2.055375 2.584142 -0.394909 [DEG: -117.7643 148.0605 -22.6266 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS257_1 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS257_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 17 1.81 36.978 18.82 REMARK ---------------------------------------------------------- MOLECULE T0955TS257_1 PFRMAT TS TARGET T0955 MODEL 1 PARENT N/A ATOM 1 CB SER 1 -2.916 -14.637 0.899 1.00 1.82 C ATOM 2 OG SER 1 -2.398 -15.670 1.724 1.00 1.82 O ATOM 4 C SER 1 -0.986 -13.039 1.166 1.00 1.82 C ATOM 5 O SER 1 -1.303 -11.864 1.385 1.00 1.82 O ATOM 8 N SER 1 -0.929 -14.836 -0.573 1.00 1.82 N ATOM 10 CA SER 1 -1.797 -13.881 0.170 1.00 1.82 C ATOM 11 N GLN 2 0.058 -13.650 1.745 1.00 1.66 N ATOM 13 CA GLN 2 0.966 -13.021 2.731 1.00 1.66 C ATOM 14 CB GLN 2 1.797 -14.089 3.481 1.00 1.66 C ATOM 15 CG GLN 2 2.497 -15.167 2.624 1.00 1.66 C ATOM 16 CD GLN 2 3.289 -16.152 3.461 1.00 1.66 C ATOM 17 OE1 GLN 2 4.472 -15.942 3.730 1.00 1.66 O ATOM 18 NE2 GLN 2 2.640 -17.233 3.878 1.00 1.66 N ATOM 21 C GLN 2 1.876 -11.900 2.179 1.00 1.66 C ATOM 22 O GLN 2 2.102 -10.894 2.863 1.00 1.66 O ATOM 23 N GLU 3 2.358 -12.084 0.940 1.00 1.52 N ATOM 25 CA GLU 3 3.244 -11.130 0.236 1.00 1.52 C ATOM 26 CB GLU 3 3.830 -11.767 -1.032 1.00 1.52 C ATOM 27 CG GLU 3 4.834 -12.890 -0.780 1.00 1.52 C ATOM 28 CD GLU 3 5.383 -13.485 -2.062 1.00 1.52 C ATOM 29 OE1 GLU 3 6.419 -12.987 -2.555 1.00 1.52 O ATOM 30 OE2 GLU 3 4.783 -14.452 -2.576 1.00 1.52 O ATOM 31 C GLU 3 2.539 -9.809 -0.121 1.00 1.52 C ATOM 32 O GLU 3 3.130 -8.733 0.031 1.00 1.52 O ATOM 33 N THR 4 1.273 -9.907 -0.557 1.00 1.48 N ATOM 35 CA THR 4 0.426 -8.754 -0.937 1.00 1.48 C ATOM 36 CB THR 4 -0.878 -9.222 -1.665 1.00 1.48 C ATOM 37 OG1 THR 4 -0.639 -10.479 -2.313 1.00 1.48 O ATOM 39 CG2 THR 4 -1.306 -8.206 -2.735 1.00 1.48 C ATOM 40 C THR 4 0.074 -7.913 0.315 1.00 1.48 C ATOM 41 O THR 4 0.083 -6.676 0.254 1.00 1.48 O ATOM 42 N ARG 5 -0.181 -8.602 1.440 1.00 1.32 N ATOM 44 CA ARG 5 -0.522 -7.985 2.739 1.00 1.32 C ATOM 45 CB ARG 5 -1.033 -9.040 3.730 1.00 1.32 C ATOM 46 CG ARG 5 -2.416 -9.596 3.411 1.00 1.32 C ATOM 47 CD ARG 5 -2.844 -10.632 4.439 1.00 1.32 C ATOM 48 NE ARG 5 -4.169 -11.185 4.147 1.00 1.32 N ATOM 50 CZ ARG 5 -4.789 -12.118 4.871 1.00 1.32 C ATOM 51 NH1 ARG 5 -5.991 -12.539 4.503 1.00 1.32 N ATOM 54 NH2 ARG 5 -4.223 -12.636 5.956 1.00 1.32 N ATOM 57 C ARG 5 0.671 -7.224 3.347 1.00 1.32 C ATOM 58 O ARG 5 0.506 -6.097 3.826 1.00 1.32 O ATOM 59 N LYS 6 1.866 -7.833 3.271 1.00 1.24 N ATOM 61 CA LYS 6 3.128 -7.257 3.783 1.00 1.24 C ATOM 62 CB LYS 6 4.247 -8.308 3.794 1.00 1.24 C ATOM 63 CG LYS 6 4.108 -9.370 4.879 1.00 1.24 C ATOM 64 CD LYS 6 5.261 -10.360 4.834 1.00 1.24 C ATOM 65 CE LYS 6 5.125 -11.416 5.920 1.00 1.24 C ATOM 66 NZ LYS 6 6.248 -12.394 5.889 1.00 1.24 N ATOM 70 C LYS 6 3.570 -6.027 2.970 1.00 1.24 C ATOM 71 O LYS 6 4.015 -5.031 3.551 1.00 1.24 O ATOM 72 N LYS 7 3.401 -6.100 1.640 1.00 1.18 N ATOM 74 CA LYS 7 3.746 -5.012 0.699 1.00 1.18 C ATOM 75 CB LYS 7 3.702 -5.505 -0.753 1.00 1.18 C ATOM 76 CG LYS 7 4.896 -6.355 -1.167 1.00 1.18 C ATOM 77 CD LYS 7 4.785 -6.794 -2.619 1.00 1.18 C ATOM 78 CE LYS 7 5.978 -7.639 -3.033 1.00 1.18 C ATOM 79 NZ LYS 7 5.884 -8.073 -4.455 1.00 1.18 N ATOM 83 C LYS 7 2.820 -3.796 0.871 1.00 1.18 C ATOM 84 O LYS 7 3.285 -2.653 0.808 1.00 1.18 O ATOM 85 N CYS 8 1.528 -4.060 1.121 1.00 1.12 N ATOM 87 CA CYS 8 0.492 -3.028 1.337 1.00 1.12 C ATOM 88 CB CYS 8 -0.909 -3.648 1.293 1.00 1.12 C ATOM 89 SG CYS 8 -1.413 -4.249 -0.336 1.00 1.12 S ATOM 90 C CYS 8 0.694 -2.261 2.658 1.00 1.12 C ATOM 91 O CYS 8 0.571 -1.031 2.680 1.00 1.12 O ATOM 92 N THR 9 1.036 -2.994 3.731 1.00 1.23 N ATOM 94 CA THR 9 1.287 -2.430 5.076 1.00 1.23 C ATOM 95 CB THR 9 1.361 -3.553 6.168 1.00 1.23 C ATOM 96 OG1 THR 9 0.379 -4.557 5.883 1.00 1.23 O ATOM 98 CG2 THR 9 1.064 -2.991 7.571 1.00 1.23 C ATOM 99 C THR 9 2.580 -1.578 5.072 1.00 1.23 C ATOM 100 O THR 9 2.608 -0.502 5.681 1.00 1.23 O ATOM 101 N GLU 10 3.612 -2.048 4.352 1.00 1.35 N ATOM 103 CA GLU 10 4.913 -1.360 4.222 1.00 1.35 C ATOM 104 CB GLU 10 5.964 -2.281 3.590 1.00 1.35 C ATOM 105 CG GLU 10 6.530 -3.335 4.536 1.00 1.35 C ATOM 106 CD GLU 10 7.567 -4.223 3.874 1.00 1.35 C ATOM 107 OE1 GLU 10 8.766 -3.877 3.924 1.00 1.35 O ATOM 108 OE2 GLU 10 7.184 -5.266 3.305 1.00 1.35 O ATOM 109 C GLU 10 4.808 -0.050 3.420 1.00 1.35 C ATOM 110 O GLU 10 5.409 0.958 3.806 1.00 1.35 O ATOM 111 N MET 11 4.020 -0.076 2.333 1.00 1.33 N ATOM 113 CA MET 11 3.780 1.089 1.454 1.00 1.33 C ATOM 114 CG MET 11 4.003 -0.021 -0.856 1.00 1.33 C ATOM 115 SD MET 11 3.154 -0.505 -2.375 1.00 1.33 S ATOM 116 CE MET 11 3.674 0.803 -3.499 1.00 1.33 C ATOM 117 C MET 11 2.961 2.186 2.156 1.00 1.33 C ATOM 118 O MET 11 3.265 3.374 2.006 1.00 1.33 O ATOM 119 CB MET 11 3.086 0.663 0.153 1.00 1.33 C ATOM 120 N LYS 12 1.952 1.768 2.939 1.00 1.41 N ATOM 122 CA LYS 12 1.067 2.667 3.711 1.00 1.41 C ATOM 123 CB LYS 12 -0.152 1.908 4.252 1.00 1.41 C ATOM 124 CG LYS 12 -1.211 1.584 3.205 1.00 1.41 C ATOM 125 CD LYS 12 -2.386 0.834 3.822 1.00 1.41 C ATOM 126 CE LYS 12 -3.464 0.504 2.792 1.00 1.41 C ATOM 127 NZ LYS 12 -4.196 1.705 2.289 1.00 1.41 N ATOM 131 C LYS 12 1.809 3.367 4.864 1.00 1.41 C ATOM 132 O LYS 12 1.595 4.561 5.102 1.00 1.41 O ATOM 133 N LYS 13 2.669 2.611 5.566 1.00 1.65 N ATOM 135 CA LYS 13 3.492 3.104 6.691 1.00 1.65 C ATOM 136 CB LYS 13 4.101 1.936 7.480 1.00 1.65 C ATOM 137 CG LYS 13 3.110 1.188 8.364 1.00 1.65 C ATOM 138 CD LYS 13 3.783 0.045 9.107 1.00 1.65 C ATOM 139 CE LYS 13 2.792 -0.696 9.991 1.00 1.65 C ATOM 140 NZ LYS 13 3.435 -1.817 10.730 1.00 1.65 N ATOM 144 C LYS 13 4.602 4.076 6.240 1.00 1.65 C ATOM 145 O LYS 13 4.831 5.098 6.895 1.00 1.65 O ATOM 146 N LYS 14 5.275 3.735 5.129 1.00 1.81 N ATOM 148 CA LYS 14 6.362 4.536 4.522 1.00 1.81 C ATOM 149 CB LYS 14 7.138 3.708 3.492 1.00 1.81 C ATOM 150 CG LYS 14 8.094 2.684 4.092 1.00 1.81 C ATOM 151 CD LYS 14 8.838 1.919 3.003 1.00 1.81 C ATOM 152 CE LYS 14 9.801 0.883 3.581 1.00 1.81 C ATOM 153 NZ LYS 14 9.114 -0.267 4.243 1.00 1.81 N ATOM 157 C LYS 14 5.903 5.862 3.888 1.00 1.81 C ATOM 158 O LYS 14 6.617 6.868 3.976 1.00 1.81 O ATOM 159 N PHE 15 4.717 5.846 3.259 1.00 1.81 N ATOM 161 CA PHE 15 4.104 7.014 2.587 1.00 1.81 C ATOM 162 CB PHE 15 2.897 6.557 1.722 1.00 1.81 C ATOM 163 CG PHE 15 2.593 7.447 0.511 1.00 1.81 C ATOM 164 CD1 PHE 15 1.688 8.530 0.616 1.00 1.81 C ATOM 165 CD2 PHE 15 3.183 7.182 -0.749 1.00 1.81 C ATOM 166 CE1 PHE 15 1.372 9.337 -0.512 1.00 1.81 C ATOM 167 CE2 PHE 15 2.878 7.980 -1.886 1.00 1.81 C ATOM 168 CZ PHE 15 1.969 9.061 -1.766 1.00 1.81 C ATOM 169 C PHE 15 3.669 8.122 3.573 1.00 1.81 C ATOM 170 O PHE 15 3.800 9.312 3.261 1.00 1.81 O ATOM 171 N LYS 16 3.162 7.711 4.745 1.00 1.82 N ATOM 173 CA LYS 16 2.695 8.622 5.807 1.00 1.82 C ATOM 174 CB LYS 16 1.332 8.153 6.349 1.00 1.82 C ATOM 175 CG LYS 16 0.318 9.269 6.610 1.00 1.82 C ATOM 176 CD LYS 16 -0.995 8.710 7.148 1.00 1.82 C ATOM 177 CE LYS 16 -2.028 9.806 7.403 1.00 1.82 C ATOM 178 NZ LYS 16 -2.538 10.447 6.154 1.00 1.82 N ATOM 182 C LYS 16 3.737 8.712 6.945 1.00 1.82 C ATOM 183 O LYS 16 4.208 7.681 7.443 1.00 1.82 O ATOM 184 N ASN 17 4.087 9.955 7.322 1.00 2.98 N ATOM 186 CA ASN 17 5.065 10.326 8.384 1.00 2.98 C ATOM 187 CB ASN 17 4.395 10.377 9.779 1.00 2.98 C ATOM 188 CG ASN 17 3.344 11.475 9.893 1.00 2.98 C ATOM 189 OD1 ASN 17 2.164 11.254 9.611 1.00 2.98 O ATOM 190 ND2 ASN 17 3.767 12.661 10.323 1.00 2.98 N ATOM 193 C ASN 17 6.396 9.540 8.444 1.00 2.98 C ATOM 194 O ASN 17 6.418 8.365 8.843 1.00 2.98 O ATOM 195 N CYS 18 7.479 10.191 7.997 1.00 4.21 N ATOM 197 CA CYS 18 8.841 9.622 7.976 1.00 4.21 C ATOM 198 CB CYS 18 9.316 9.394 6.530 1.00 4.21 C ATOM 199 SG CYS 18 9.236 10.853 5.459 1.00 4.21 S ATOM 200 C CYS 18 9.823 10.543 8.715 1.00 4.21 C ATOM 201 O CYS 18 10.691 10.060 9.452 1.00 4.21 O ATOM 202 N GLU 19 9.669 11.859 8.506 1.00 4.65 N ATOM 204 CA GLU 19 10.508 12.907 9.120 1.00 4.65 C ATOM 205 CB GLU 19 11.171 13.784 8.045 1.00 4.65 C ATOM 206 CG GLU 19 12.235 13.076 7.209 1.00 4.65 C ATOM 207 CD GLU 19 12.849 13.977 6.157 1.00 4.65 C ATOM 208 OE1 GLU 19 12.322 14.018 5.024 1.00 4.65 O ATOM 209 OE2 GLU 19 13.862 14.644 6.458 1.00 4.65 O ATOM 210 C GLU 19 9.676 13.786 10.066 1.00 4.65 C ATOM 211 O GLU 19 8.502 14.059 9.783 1.00 4.65 O ATOM 212 N VAL 20 10.287 14.202 11.186 1.00 5.22 N ATOM 214 CA VAL 20 9.647 15.051 12.211 1.00 5.22 C ATOM 215 CB VAL 20 9.697 14.357 13.657 1.00 5.22 C ATOM 216 CG1 VAL 20 11.141 14.188 14.175 1.00 5.22 C ATOM 217 CG2 VAL 20 8.802 15.088 14.672 1.00 5.22 C ATOM 218 C VAL 20 10.245 16.486 12.189 1.00 5.22 C ATOM 219 O VAL 20 11.472 16.653 12.175 1.00 5.22 O ATOM 220 N ARG 21 9.356 17.489 12.157 1.00 5.54 N ATOM 222 CA ARG 21 9.714 18.921 12.131 1.00 5.54 C ATOM 223 CB ARG 21 9.153 19.622 10.868 1.00 5.54 C ATOM 224 CG ARG 21 7.659 19.392 10.526 1.00 5.54 C ATOM 225 CD ARG 21 7.276 20.002 9.177 1.00 5.54 C ATOM 226 NE ARG 21 7.382 21.464 9.157 1.00 5.54 N ATOM 228 CZ ARG 21 7.265 22.230 8.071 1.00 5.54 C ATOM 229 NH1 ARG 21 7.382 23.545 8.184 1.00 5.54 N ATOM 232 NH2 ARG 21 7.033 21.696 6.875 1.00 5.54 N ATOM 235 C ARG 21 9.314 19.670 13.417 1.00 5.54 C ATOM 236 O ARG 21 8.262 19.381 14.000 1.00 5.54 O ATOM 237 N CYS 22 10.161 20.622 13.836 1.00 7.80 N ATOM 239 CA CYS 22 9.956 21.441 15.046 1.00 7.80 C ATOM 240 CB CYS 22 11.221 21.406 15.922 1.00 7.80 C ATOM 241 SG CYS 22 11.056 22.194 17.545 1.00 7.80 S ATOM 242 C CYS 22 9.601 22.895 14.671 1.00 7.80 C ATOM 243 O CYS 22 9.215 23.690 15.540 1.00 7.80 O ATOM 244 N ASP 23 9.692 23.206 13.370 1.00 7.61 N ATOM 246 CA ASP 23 9.392 24.539 12.810 1.00 7.61 C ATOM 247 CB ASP 23 10.417 24.916 11.711 1.00 7.61 C ATOM 248 CG ASP 23 10.647 23.799 10.681 1.00 7.61 C ATOM 249 OD1 ASP 23 11.551 22.963 10.895 1.00 7.61 O ATOM 250 OD2 ASP 23 9.931 23.773 9.655 1.00 7.61 O ATOM 251 C ASP 23 7.941 24.670 12.294 1.00 7.61 C ATOM 252 O ASP 23 7.426 25.787 12.157 1.00 7.61 O ATOM 253 N GLU 24 7.297 23.510 12.068 1.00 7.83 N ATOM 255 CA GLU 24 5.902 23.329 11.570 1.00 7.83 C ATOM 256 CB GLU 24 4.915 22.985 12.721 1.00 7.83 C ATOM 257 CG GLU 24 4.864 23.946 13.928 1.00 7.83 C ATOM 258 CD GLU 24 3.872 23.504 14.986 1.00 7.83 C ATOM 259 OE1 GLU 24 2.695 23.914 14.909 1.00 7.83 O ATOM 260 OE2 GLU 24 4.269 22.746 15.896 1.00 7.83 O ATOM 261 C GLU 24 5.282 24.340 10.573 1.00 7.83 C ATOM 262 O GLU 24 5.021 23.980 9.419 1.00 7.83 O ATOM 263 N SER 25 5.061 25.588 11.029 1.00 7.89 N ATOM 265 CA SER 25 4.474 26.724 10.262 1.00 7.89 C ATOM 266 CB SER 25 5.448 27.249 9.189 1.00 7.89 C ATOM 267 OG SER 25 6.655 27.707 9.775 1.00 7.89 O ATOM 269 C SER 25 3.080 26.494 9.640 1.00 7.89 C ATOM 270 O SER 25 2.759 25.372 9.229 1.00 7.89 O ATOM 271 N ASN 26 2.275 27.564 9.573 1.00 6.77 N ATOM 273 CA ASN 26 0.910 27.534 9.014 1.00 6.77 C ATOM 274 CB ASN 26 -0.064 28.281 9.952 1.00 6.77 C ATOM 275 CG ASN 26 -1.504 27.769 9.856 1.00 6.77 C ATOM 276 OD1 ASN 26 -2.300 28.264 9.054 1.00 6.77 O ATOM 277 ND2 ASN 26 -1.842 26.788 10.687 1.00 6.77 N ATOM 280 C ASN 26 0.881 28.134 7.590 1.00 6.77 C ATOM 281 O ASN 26 1.311 29.277 7.384 1.00 6.77 O ATOM 282 N HIS 27 0.391 27.330 6.628 1.00 6.50 N ATOM 284 CA HIS 27 0.244 27.642 5.178 1.00 6.50 C ATOM 285 CG HIS 27 -1.687 28.090 3.537 1.00 6.50 C ATOM 286 CD2 HIS 27 -1.877 28.912 2.474 1.00 6.50 C ATOM 287 ND1 HIS 27 -2.164 26.854 3.151 1.00 6.50 N ATOM 289 CE1 HIS 27 -2.620 26.925 1.912 1.00 6.50 C ATOM 290 NE2 HIS 27 -2.458 28.163 1.480 1.00 6.50 N ATOM 292 C HIS 27 1.430 28.383 4.501 1.00 6.50 C ATOM 293 O HIS 27 2.208 27.756 3.772 1.00 6.50 O ATOM 294 CB HIS 27 -1.112 28.353 4.901 1.00 6.50 C ATOM 295 N CYS 28 1.545 29.697 4.754 1.00 5.83 N ATOM 297 CA CYS 28 2.602 30.560 4.199 1.00 5.83 C ATOM 298 CB CYS 28 1.992 31.654 3.306 1.00 5.83 C ATOM 299 SG CYS 28 3.191 32.651 2.380 1.00 5.83 S ATOM 300 C CYS 28 3.419 31.201 5.332 1.00 5.83 C ATOM 301 O CYS 28 2.858 31.546 6.381 1.00 5.83 O ATOM 302 N VAL 29 4.735 31.338 5.112 1.00 4.53 N ATOM 304 CA VAL 29 5.681 31.935 6.081 1.00 4.53 C ATOM 305 CB VAL 29 6.935 30.999 6.349 1.00 4.53 C ATOM 306 CG1 VAL 29 7.658 31.398 7.649 1.00 4.53 C ATOM 307 CG2 VAL 29 6.515 29.530 6.426 1.00 4.53 C ATOM 308 C VAL 29 6.140 33.305 5.527 1.00 4.53 C ATOM 309 O VAL 29 6.347 33.450 4.314 1.00 4.53 O ATOM 310 N GLU 30 6.251 34.294 6.424 1.00 4.95 N ATOM 312 CA GLU 30 6.670 35.671 6.094 1.00 4.95 C ATOM 313 CB GLU 30 5.587 36.702 6.501 1.00 4.95 C ATOM 314 CG GLU 30 4.973 36.561 7.913 1.00 4.95 C ATOM 315 CD GLU 30 3.919 37.614 8.199 1.00 4.95 C ATOM 316 OE1 GLU 30 4.280 38.694 8.712 1.00 4.95 O ATOM 317 OE2 GLU 30 2.731 37.361 7.911 1.00 4.95 O ATOM 318 C GLU 30 8.045 36.054 6.672 1.00 4.95 C ATOM 319 O GLU 30 8.379 35.654 7.794 1.00 4.95 O ATOM 320 N VAL 31 8.821 36.823 5.892 1.00 4.83 N ATOM 322 CA VAL 31 10.169 37.300 6.268 1.00 4.83 C ATOM 323 CB VAL 31 11.261 36.873 5.178 1.00 4.83 C ATOM 324 CG1 VAL 31 11.007 37.528 3.804 1.00 4.83 C ATOM 325 CG2 VAL 31 12.695 37.122 5.680 1.00 4.83 C ATOM 326 C VAL 31 10.132 38.829 6.534 1.00 4.83 C ATOM 327 O VAL 31 9.419 39.563 5.837 1.00 4.83 O ATOM 328 N ARG 32 10.893 39.273 7.545 1.00 4.56 N ATOM 330 CA ARG 32 10.983 40.690 7.950 1.00 4.56 C ATOM 331 CB ARG 32 10.693 40.849 9.453 1.00 4.56 C ATOM 332 CG ARG 32 9.254 40.557 9.861 1.00 4.56 C ATOM 333 CD ARG 32 9.063 40.712 11.361 1.00 4.56 C ATOM 334 NE ARG 32 7.687 40.430 11.775 1.00 4.56 N ATOM 336 CZ ARG 32 7.247 40.435 13.034 1.00 4.56 C ATOM 337 NH1 ARG 32 5.973 40.164 13.282 1.00 4.56 N ATOM 340 NH2 ARG 32 8.064 40.706 14.047 1.00 4.56 N ATOM 343 C ARG 32 12.351 41.305 7.620 1.00 4.56 C ATOM 344 O ARG 32 13.385 40.637 7.756 1.00 4.56 O ATOM 345 N CYS 33 12.335 42.568 7.167 1.00 5.16 N ATOM 347 CA CYS 33 13.538 43.337 6.802 1.00 5.16 C ATOM 348 CB CYS 33 13.472 43.782 5.332 1.00 5.16 C ATOM 349 SG CYS 33 11.976 44.696 4.877 1.00 5.16 S ATOM 350 C CYS 33 13.699 44.563 7.715 1.00 5.16 C ATOM 351 O CYS 33 14.827 44.948 8.046 1.00 5.16 O ATOM 352 N SER 34 12.562 45.156 8.110 1.00 5.72 N ATOM 354 CA SER 34 12.497 46.340 8.986 1.00 5.72 C ATOM 355 CB SER 34 11.637 47.434 8.332 1.00 5.72 C ATOM 356 OG SER 34 11.699 48.654 9.054 1.00 5.72 O ATOM 358 C SER 34 11.916 45.953 10.360 1.00 5.72 C ATOM 359 O SER 34 11.283 44.897 10.484 1.00 5.72 O ATOM 360 N ASP 35 12.137 46.809 11.369 1.00 6.92 N ATOM 362 CA ASP 35 11.658 46.602 12.750 1.00 6.92 C ATOM 363 CB ASP 35 12.722 47.056 13.763 1.00 6.92 C ATOM 364 CG ASP 35 13.989 46.206 13.717 1.00 6.92 C ATOM 365 OD1 ASP 35 14.922 46.561 12.963 1.00 6.92 O ATOM 366 OD2 ASP 35 14.061 45.193 14.448 1.00 6.92 O ATOM 367 C ASP 35 10.331 47.329 13.029 1.00 6.92 C ATOM 368 O ASP 35 10.093 48.417 12.490 1.00 6.92 O ATOM 369 N THR 36 9.483 46.708 13.863 1.00 6.66 N ATOM 371 CA THR 36 8.159 47.237 14.255 1.00 6.66 C ATOM 372 CB THR 36 7.029 46.123 14.144 1.00 6.66 C ATOM 373 OG1 THR 36 5.782 46.634 14.636 1.00 6.66 O ATOM 375 CG2 THR 36 7.402 44.825 14.897 1.00 6.66 C ATOM 376 C THR 36 8.170 47.906 15.653 1.00 6.66 C ATOM 377 O THR 36 7.434 48.875 15.884 1.00 6.66 O ATOM 378 N LYS 37 9.025 47.390 16.548 1.00 7.45 N ATOM 380 CA LYS 37 9.177 47.884 17.931 1.00 7.45 C ATOM 381 CB LYS 37 9.412 46.714 18.897 1.00 7.45 C ATOM 382 CG LYS 37 8.205 45.806 19.106 1.00 7.45 C ATOM 383 CD LYS 37 8.523 44.675 20.080 1.00 7.45 C ATOM 384 CE LYS 37 7.326 43.754 20.304 1.00 7.45 C ATOM 385 NZ LYS 37 6.971 42.936 19.105 1.00 7.45 N ATOM 389 C LYS 37 10.312 48.915 18.077 1.00 7.45 C ATOM 390 O LYS 37 10.241 49.797 18.942 1.00 7.45 O ATOM 391 N TYR 38 11.332 48.800 17.214 1.00 7.38 N ATOM 393 CA TYR 38 12.506 49.693 17.200 1.00 7.38 C ATOM 394 CB TYR 38 13.811 48.871 17.062 1.00 7.38 C ATOM 395 CG TYR 38 14.133 47.895 18.200 1.00 7.38 C ATOM 396 CD1 TYR 38 14.913 48.300 19.314 1.00 7.38 C ATOM 397 CE1 TYR 38 15.244 47.388 20.355 1.00 7.38 C ATOM 398 CD2 TYR 38 13.693 46.547 18.158 1.00 7.38 C ATOM 399 CE2 TYR 38 14.021 45.631 19.193 1.00 7.38 C ATOM 400 CZ TYR 38 14.793 46.060 20.284 1.00 7.38 C ATOM 401 OH TYR 38 15.110 45.173 21.288 1.00 7.38 O ATOM 403 C TYR 38 12.426 50.739 16.076 1.00 7.38 C ATOM 404 O TYR 38 11.951 50.434 14.974 1.00 7.38 O ATOM 405 N THR 39 12.879 51.966 16.378 1.00 7.53 N ATOM 407 CA THR 39 12.886 53.107 15.440 1.00 7.53 C ATOM 408 CB THR 39 12.182 54.365 16.049 1.00 7.53 C ATOM 409 OG1 THR 39 12.705 54.630 17.357 1.00 7.53 O ATOM 411 CG2 THR 39 10.674 54.153 16.135 1.00 7.53 C ATOM 412 C THR 39 14.317 53.478 15.003 1.00 7.53 C ATOM 413 O THR 39 15.256 53.387 15.807 1.00 7.53 O ATOM 414 N LEU 40 14.468 53.855 13.725 1.00 7.55 N ATOM 416 CA LEU 40 15.756 54.249 13.124 1.00 7.55 C ATOM 417 CB LEU 40 16.071 53.393 11.865 1.00 7.55 C ATOM 418 CG LEU 40 15.114 53.046 10.697 1.00 7.55 C ATOM 419 CD1 LEU 40 15.094 54.137 9.612 1.00 7.55 C ATOM 420 CD2 LEU 40 15.564 51.731 10.081 1.00 7.55 C ATOM 421 C LEU 40 15.830 55.754 12.804 1.00 7.55 C ATOM 422 O LEU 40 14.828 56.349 12.389 1.00 7.55 O ATOM 423 N CYS 41 17.024 56.345 12.996 1.00 8.26 N ATOM 425 CA CYS 41 17.358 57.779 12.764 1.00 8.26 C ATOM 426 CB CYS 41 17.334 58.136 11.261 1.00 8.26 C ATOM 427 SG CYS 41 18.003 59.769 10.834 1.00 8.26 S ATOM 428 C CYS 41 16.545 58.802 13.575 1.00 8.26 C ATOM 429 O CYS 41 15.312 58.639 13.691 1.00 8.26 O ATOM 430 OXT CYS 41 17.165 59.760 14.086 1.00 8.26 O TER END