####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS335_1 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS335_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 2.23 2.23 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 32 2 - 33 1.97 2.36 LCS_AVERAGE: 75.55 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 17 - 33 0.97 3.55 LCS_AVERAGE: 37.24 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 16 22 41 3 3 10 12 15 24 30 38 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 16 32 41 11 15 18 26 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 16 32 41 11 15 18 26 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 16 32 41 11 15 18 26 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 16 32 41 11 15 18 26 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 16 32 41 11 15 18 26 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 16 32 41 11 15 18 26 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 16 32 41 11 15 18 26 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 16 32 41 11 15 18 26 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 16 32 41 8 15 18 26 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 16 32 41 10 15 18 26 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 16 32 41 11 15 18 26 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 16 32 41 11 15 18 26 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 16 32 41 11 15 18 26 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 16 32 41 8 15 18 26 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 16 32 41 10 15 18 26 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 17 32 41 3 12 22 26 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 17 32 41 6 18 23 24 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 17 32 41 6 18 23 26 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 17 32 41 4 18 23 24 29 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 17 32 41 4 18 23 24 29 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 17 32 41 3 18 23 24 29 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 17 32 41 4 18 23 24 29 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 17 32 41 4 18 23 25 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 17 32 41 3 18 23 25 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 17 32 41 4 18 23 25 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 17 32 41 4 18 23 25 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 17 32 41 4 18 23 26 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 17 32 41 6 18 23 25 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 17 32 41 6 17 23 26 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 17 32 41 6 18 23 26 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 17 32 41 6 18 23 26 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 17 32 41 6 13 23 24 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 11 28 41 3 8 16 24 25 28 38 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 11 28 41 3 13 23 24 25 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 11 28 41 3 18 23 26 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 11 28 41 6 18 23 26 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 11 28 41 6 18 23 26 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 11 28 41 6 18 23 26 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 8 28 41 4 18 23 26 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 7 28 41 3 18 23 26 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 70.93 ( 37.24 75.55 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 18 23 26 34 39 39 40 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 26.83 43.90 56.10 63.41 82.93 95.12 95.12 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.32 0.74 0.92 1.38 1.80 2.06 2.06 2.14 2.23 2.23 2.23 2.23 2.23 2.23 2.23 2.23 2.23 2.23 2.23 2.23 GDT RMS_ALL_AT 2.71 3.60 3.69 2.53 2.29 2.25 2.25 2.24 2.23 2.23 2.23 2.23 2.23 2.23 2.23 2.23 2.23 2.23 2.23 2.23 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 4.701 0 0.159 0.774 6.861 1.818 1.212 6.754 LGA Q 2 Q 2 2.057 0 0.193 0.920 3.556 44.545 39.394 2.334 LGA E 3 E 3 1.197 0 0.014 1.515 6.646 65.455 38.384 6.371 LGA T 4 T 4 1.476 0 0.096 1.045 3.011 58.182 52.468 1.474 LGA R 5 R 5 1.853 0 0.033 0.233 3.557 47.727 35.372 3.557 LGA K 6 K 6 1.928 0 0.016 1.277 4.769 50.909 39.394 4.478 LGA K 7 K 7 1.490 0 0.013 0.662 1.601 61.818 62.222 1.281 LGA C 8 C 8 1.592 0 0.039 0.773 1.825 50.909 50.909 1.825 LGA T 9 T 9 2.232 0 0.024 0.106 3.012 41.364 34.026 2.627 LGA E 10 E 10 2.314 0 0.025 0.491 3.111 38.182 32.323 2.769 LGA M 11 M 11 1.884 0 0.073 0.109 2.047 50.909 49.318 1.998 LGA K 12 K 12 2.075 0 0.075 0.689 2.511 41.364 41.212 1.861 LGA K 13 K 13 2.082 0 0.058 0.596 3.050 38.182 34.747 3.050 LGA K 14 K 14 1.942 0 0.028 0.592 3.715 44.545 43.636 3.715 LGA F 15 F 15 2.414 0 0.325 0.344 4.160 27.273 37.686 1.881 LGA K 16 K 16 1.797 0 0.199 1.313 4.855 62.273 41.414 4.855 LGA N 17 N 17 1.203 0 0.455 0.610 3.313 65.909 48.182 2.607 LGA C 18 C 18 2.322 0 0.116 0.152 3.834 38.182 30.303 3.834 LGA E 19 E 19 1.468 0 0.217 0.460 2.000 62.273 69.697 0.682 LGA V 20 V 20 3.077 0 0.050 0.091 3.851 18.636 15.325 3.851 LGA R 21 R 21 3.117 0 0.116 1.294 4.714 20.455 17.355 4.714 LGA C 22 C 22 3.098 0 0.033 0.146 3.105 20.455 19.697 3.098 LGA D 23 D 23 3.225 0 0.348 1.110 5.914 11.818 9.545 4.174 LGA E 24 E 24 2.205 0 0.029 0.818 3.962 41.364 37.172 3.962 LGA S 25 S 25 2.163 0 0.139 0.691 3.792 41.364 33.939 3.792 LGA N 26 N 26 1.592 0 0.179 1.175 6.440 62.273 38.864 6.440 LGA H 27 H 27 1.828 0 0.056 0.275 3.346 50.909 38.364 3.346 LGA C 28 C 28 1.501 0 0.179 0.786 2.684 50.909 49.394 2.684 LGA V 29 V 29 2.096 0 0.083 0.121 2.826 47.727 42.078 2.826 LGA E 30 E 30 1.694 0 0.082 0.636 2.743 47.727 48.485 2.743 LGA V 31 V 31 1.541 0 0.084 0.122 2.679 70.000 54.805 2.341 LGA R 32 R 32 0.890 0 0.166 1.201 9.460 63.182 36.364 9.460 LGA C 33 C 33 2.506 0 0.536 0.615 4.214 25.455 20.606 3.790 LGA S 34 S 34 4.128 0 0.284 0.554 4.716 8.182 7.576 3.793 LGA D 35 D 35 3.137 0 0.249 1.043 5.685 22.727 19.545 5.685 LGA T 36 T 36 1.630 0 0.137 1.000 3.772 55.000 45.714 3.772 LGA K 37 K 37 1.584 0 0.078 1.339 3.187 45.000 47.273 3.187 LGA Y 38 Y 38 2.034 0 0.022 1.351 3.077 55.000 51.364 2.436 LGA T 39 T 39 0.870 0 0.118 0.118 2.068 62.727 57.662 1.895 LGA L 40 L 40 2.192 0 0.143 1.026 5.390 47.727 29.091 5.390 LGA C 41 C 41 2.024 0 0.028 0.733 4.161 44.545 38.961 4.161 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 2.234 2.305 2.761 44.024 37.587 22.838 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 40 2.14 76.220 81.789 1.784 LGA_LOCAL RMSD: 2.142 Number of atoms: 40 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.239 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 2.234 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.669322 * X + 0.030690 * Y + -0.742338 * Z + 1.053194 Y_new = 0.457424 * X + -0.770311 * Y + -0.444278 * Z + 2.798783 Z_new = -0.585466 * X + -0.636929 * Y + 0.501548 * Z + 2.476718 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.542085 0.625455 -0.903756 [DEG: 145.6507 35.8359 -51.7814 ] ZXZ: -1.031492 1.045409 -2.398269 [DEG: -59.1001 59.8975 -137.4107 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS335_1 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS335_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 40 2.14 81.789 2.23 REMARK ---------------------------------------------------------- MOLECULE T0955TS335_1 PFRMAT TS TARGET T0955 MODEL 1 PARENT N/A ATOM 1 N SER 1 -3.852 -10.898 0.205 1.00 0.40 N ATOM 2 CA SER 1 -2.430 -11.129 -0.010 1.00 0.40 C ATOM 3 C SER 1 -1.593 -10.447 1.067 1.00 0.40 C ATOM 4 O SER 1 -1.335 -9.233 1.018 1.00 0.40 O ATOM 5 CB SER 1 -2.003 -10.644 -1.381 1.00 0.40 C ATOM 6 OG SER 1 -0.623 -10.849 -1.571 1.00 0.40 O ATOM 14 N GLN 2 -1.070 -11.251 1.999 1.00 0.61 N ATOM 15 CA GLN 2 -0.274 -10.723 3.112 1.00 0.61 C ATOM 16 C GLN 2 0.965 -9.985 2.612 1.00 0.61 C ATOM 17 O GLN 2 1.426 -9.028 3.239 1.00 0.61 O ATOM 18 CB GLN 2 0.119 -11.845 4.070 1.00 0.61 C ATOM 19 CG GLN 2 0.777 -11.384 5.372 1.00 0.61 C ATOM 20 CD GLN 2 -0.172 -10.558 6.274 1.00 0.61 C ATOM 21 OE1 GLN 2 -1.359 -10.895 6.441 1.00 0.61 O ATOM 22 NE2 GLN 2 0.362 -9.496 6.876 1.00 0.61 N ATOM 31 N GLU 3 1.500 -10.411 1.479 1.00 0.27 N ATOM 32 CA GLU 3 2.675 -9.763 0.932 1.00 0.27 C ATOM 33 C GLU 3 2.365 -8.314 0.554 1.00 0.27 C ATOM 34 O GLU 3 3.240 -7.449 0.632 1.00 0.27 O ATOM 35 CB GLU 3 3.224 -10.540 -0.260 1.00 0.27 C ATOM 36 CG GLU 3 3.833 -11.905 0.118 1.00 0.27 C ATOM 37 CD GLU 3 5.039 -11.792 1.049 1.00 0.27 C ATOM 38 OE1 GLU 3 5.955 -11.077 0.731 1.00 0.27 O ATOM 39 OE2 GLU 3 5.023 -12.419 2.096 1.00 0.27 O ATOM 46 N THR 4 1.125 -8.020 0.142 1.00 0.46 N ATOM 47 CA THR 4 0.861 -6.651 -0.245 1.00 0.46 C ATOM 48 C THR 4 0.622 -5.823 1.001 1.00 0.46 C ATOM 49 O THR 4 0.853 -4.615 0.996 1.00 0.46 O ATOM 50 CB THR 4 -0.324 -6.517 -1.203 1.00 0.46 C ATOM 51 OG1 THR 4 -1.523 -6.991 -0.569 1.00 0.46 O ATOM 52 CG2 THR 4 -0.075 -7.280 -2.487 1.00 0.46 C ATOM 60 N ARG 5 0.221 -6.478 2.095 1.00 0.76 N ATOM 61 CA ARG 5 0.053 -5.772 3.361 1.00 0.76 C ATOM 62 C ARG 5 1.436 -5.318 3.841 1.00 0.76 C ATOM 63 O ARG 5 1.605 -4.207 4.364 1.00 0.76 O ATOM 64 CB ARG 5 -0.630 -6.650 4.400 1.00 0.76 C ATOM 65 CG ARG 5 -2.108 -6.931 4.120 1.00 0.76 C ATOM 66 CD ARG 5 -2.693 -7.877 5.118 1.00 0.76 C ATOM 67 NE ARG 5 -4.110 -8.098 4.906 1.00 0.76 N ATOM 68 CZ ARG 5 -4.826 -9.123 5.426 1.00 0.76 C ATOM 69 NH1 ARG 5 -4.250 -10.058 6.169 1.00 0.76 N ATOM 70 NH2 ARG 5 -6.126 -9.190 5.185 1.00 0.76 N ATOM 84 N LYS 6 2.448 -6.166 3.609 1.00 0.13 N ATOM 85 CA LYS 6 3.817 -5.813 3.977 1.00 0.13 C ATOM 86 C LYS 6 4.261 -4.613 3.137 1.00 0.13 C ATOM 87 O LYS 6 4.859 -3.661 3.646 1.00 0.13 O ATOM 88 CB LYS 6 4.758 -6.992 3.724 1.00 0.13 C ATOM 89 CG LYS 6 4.581 -8.186 4.656 1.00 0.13 C ATOM 90 CD LYS 6 5.519 -9.329 4.252 1.00 0.13 C ATOM 91 CE LYS 6 5.340 -10.562 5.125 1.00 0.13 C ATOM 92 NZ LYS 6 6.166 -11.708 4.632 1.00 0.13 N ATOM 106 N LYS 7 3.906 -4.635 1.853 1.00 0.57 N ATOM 107 CA LYS 7 4.234 -3.543 0.947 1.00 0.57 C ATOM 108 C LYS 7 3.484 -2.255 1.341 1.00 0.57 C ATOM 109 O LYS 7 4.022 -1.155 1.205 1.00 0.57 O ATOM 110 CB LYS 7 3.967 -3.978 -0.494 1.00 0.57 C ATOM 111 CG LYS 7 4.959 -5.050 -0.971 1.00 0.57 C ATOM 112 CD LYS 7 4.688 -5.590 -2.390 1.00 0.57 C ATOM 113 CE LYS 7 5.732 -6.683 -2.726 1.00 0.57 C ATOM 114 NZ LYS 7 5.511 -7.333 -4.057 1.00 0.57 N ATOM 128 N CYS 8 2.254 -2.386 1.857 1.00 0.29 N ATOM 129 CA CYS 8 1.496 -1.214 2.294 1.00 0.29 C ATOM 130 C CYS 8 2.233 -0.559 3.452 1.00 0.29 C ATOM 131 O CYS 8 2.332 0.671 3.529 1.00 0.29 O ATOM 132 CB CYS 8 0.097 -1.602 2.755 1.00 0.29 C ATOM 133 SG CYS 8 -0.954 -2.188 1.454 1.00 0.29 S ATOM 139 N THR 9 2.798 -1.398 4.333 1.00 0.99 N ATOM 140 CA THR 9 3.574 -0.903 5.458 1.00 0.99 C ATOM 141 C THR 9 4.783 -0.139 4.934 1.00 0.99 C ATOM 142 O THR 9 5.101 0.938 5.443 1.00 0.99 O ATOM 143 CB THR 9 4.013 -2.031 6.403 1.00 0.99 C ATOM 144 OG1 THR 9 2.855 -2.674 6.959 1.00 0.99 O ATOM 145 CG2 THR 9 4.864 -1.456 7.504 1.00 0.99 C ATOM 153 N GLU 10 5.452 -0.685 3.909 1.00 0.11 N ATOM 154 CA GLU 10 6.596 -0.008 3.298 1.00 0.11 C ATOM 155 C GLU 10 6.216 1.396 2.825 1.00 0.11 C ATOM 156 O GLU 10 6.939 2.358 3.109 1.00 0.11 O ATOM 157 CB GLU 10 7.131 -0.801 2.098 1.00 0.11 C ATOM 158 CG GLU 10 8.317 -0.173 1.390 1.00 0.11 C ATOM 159 CD GLU 10 8.776 -0.968 0.174 1.00 0.11 C ATOM 160 OE1 GLU 10 8.245 -2.026 -0.063 1.00 0.11 O ATOM 161 OE2 GLU 10 9.657 -0.496 -0.528 1.00 0.11 O ATOM 168 N MET 11 5.058 1.526 2.157 1.00 0.39 N ATOM 169 CA MET 11 4.629 2.841 1.681 1.00 0.39 C ATOM 170 C MET 11 4.421 3.789 2.845 1.00 0.39 C ATOM 171 O MET 11 4.814 4.955 2.790 1.00 0.39 O ATOM 172 CB MET 11 3.312 2.738 0.905 1.00 0.39 C ATOM 173 CG MET 11 3.373 1.982 -0.386 1.00 0.39 C ATOM 174 SD MET 11 4.465 2.727 -1.560 1.00 0.39 S ATOM 175 CE MET 11 5.936 1.762 -1.298 1.00 0.39 C ATOM 185 N LYS 12 3.860 3.288 3.936 1.00 0.41 N ATOM 186 CA LYS 12 3.649 4.160 5.073 1.00 0.41 C ATOM 187 C LYS 12 4.974 4.564 5.712 1.00 0.41 C ATOM 188 O LYS 12 5.202 5.738 5.999 1.00 0.41 O ATOM 189 CB LYS 12 2.729 3.493 6.089 1.00 0.41 C ATOM 190 CG LYS 12 1.287 3.384 5.611 1.00 0.41 C ATOM 191 CD LYS 12 0.400 2.697 6.633 1.00 0.41 C ATOM 192 CE LYS 12 -1.040 2.616 6.139 1.00 0.41 C ATOM 193 NZ LYS 12 -1.931 1.940 7.129 1.00 0.41 N ATOM 207 N LYS 13 5.909 3.631 5.845 1.00 0.54 N ATOM 208 CA LYS 13 7.192 3.984 6.438 1.00 0.54 C ATOM 209 C LYS 13 7.954 5.016 5.608 1.00 0.54 C ATOM 210 O LYS 13 8.634 5.885 6.159 1.00 0.54 O ATOM 211 CB LYS 13 8.062 2.744 6.651 1.00 0.54 C ATOM 212 CG LYS 13 7.602 1.823 7.784 1.00 0.54 C ATOM 213 CD LYS 13 8.531 0.622 7.924 1.00 0.54 C ATOM 214 CE LYS 13 8.154 -0.247 9.119 1.00 0.54 C ATOM 215 NZ LYS 13 9.039 -1.441 9.242 1.00 0.54 N ATOM 229 N LYS 14 7.846 4.923 4.282 1.00 0.92 N ATOM 230 CA LYS 14 8.547 5.841 3.395 1.00 0.92 C ATOM 231 C LYS 14 7.852 7.180 3.140 1.00 0.92 C ATOM 232 O LYS 14 8.529 8.201 2.993 1.00 0.92 O ATOM 233 CB LYS 14 8.817 5.144 2.064 1.00 0.92 C ATOM 234 CG LYS 14 9.855 4.052 2.171 1.00 0.92 C ATOM 235 CD LYS 14 10.113 3.348 0.858 1.00 0.92 C ATOM 236 CE LYS 14 11.270 2.355 1.026 1.00 0.92 C ATOM 237 NZ LYS 14 11.520 1.543 -0.187 1.00 0.92 N ATOM 251 N PHE 15 6.520 7.196 3.072 1.00 0.74 N ATOM 252 CA PHE 15 5.821 8.425 2.706 1.00 0.74 C ATOM 253 C PHE 15 4.840 8.959 3.774 1.00 0.74 C ATOM 254 O PHE 15 4.333 10.082 3.654 1.00 0.74 O ATOM 255 CB PHE 15 5.095 8.153 1.410 1.00 0.74 C ATOM 256 CG PHE 15 5.993 7.596 0.353 1.00 0.74 C ATOM 257 CD1 PHE 15 5.782 6.303 -0.110 1.00 0.74 C ATOM 258 CD2 PHE 15 7.055 8.315 -0.155 1.00 0.74 C ATOM 259 CE1 PHE 15 6.615 5.750 -1.051 1.00 0.74 C ATOM 260 CE2 PHE 15 7.888 7.759 -1.105 1.00 0.74 C ATOM 261 CZ PHE 15 7.665 6.472 -1.549 1.00 0.74 C ATOM 271 N LYS 16 4.532 8.146 4.792 1.00 0.58 N ATOM 272 CA LYS 16 3.632 8.439 5.922 1.00 0.58 C ATOM 273 C LYS 16 2.155 8.709 5.608 1.00 0.58 C ATOM 274 O LYS 16 1.265 7.993 6.073 1.00 0.58 O ATOM 275 CB LYS 16 4.191 9.615 6.726 1.00 0.58 C ATOM 276 CG LYS 16 5.499 9.295 7.450 1.00 0.58 C ATOM 277 CD LYS 16 6.021 10.491 8.231 1.00 0.58 C ATOM 278 CE LYS 16 7.332 10.162 8.934 1.00 0.58 C ATOM 279 NZ LYS 16 7.871 11.333 9.677 1.00 0.58 N ATOM 293 N ASN 17 1.878 9.726 4.811 1.00 0.19 N ATOM 294 CA ASN 17 0.497 10.134 4.553 1.00 0.19 C ATOM 295 C ASN 17 -0.149 9.334 3.437 1.00 0.19 C ATOM 296 O ASN 17 -0.452 9.877 2.368 1.00 0.19 O ATOM 297 CB ASN 17 0.455 11.615 4.239 1.00 0.19 C ATOM 298 CG ASN 17 0.864 12.458 5.424 1.00 0.19 C ATOM 299 OD1 ASN 17 0.482 12.179 6.568 1.00 0.19 O ATOM 300 ND2 ASN 17 1.635 13.486 5.170 1.00 0.19 N ATOM 307 N CYS 18 -0.355 8.038 3.694 1.00 0.23 N ATOM 308 CA CYS 18 -0.830 7.134 2.653 1.00 0.23 C ATOM 309 C CYS 18 -2.259 6.640 2.851 1.00 0.23 C ATOM 310 O CYS 18 -2.640 6.174 3.926 1.00 0.23 O ATOM 311 CB CYS 18 0.098 5.926 2.553 1.00 0.23 C ATOM 312 SG CYS 18 1.812 6.347 2.142 1.00 0.23 S ATOM 317 N GLU 19 -3.014 6.698 1.754 1.00 0.32 N ATOM 318 CA GLU 19 -4.369 6.192 1.612 1.00 0.32 C ATOM 319 C GLU 19 -4.256 4.857 0.900 1.00 0.32 C ATOM 320 O GLU 19 -3.667 4.783 -0.179 1.00 0.32 O ATOM 321 CB GLU 19 -5.230 7.160 0.794 1.00 0.32 C ATOM 322 CG GLU 19 -6.689 6.730 0.607 1.00 0.32 C ATOM 323 CD GLU 19 -7.500 7.713 -0.230 1.00 0.32 C ATOM 324 OE1 GLU 19 -6.963 8.728 -0.616 1.00 0.32 O ATOM 325 OE2 GLU 19 -8.651 7.441 -0.475 1.00 0.32 O ATOM 332 N VAL 20 -4.786 3.800 1.496 1.00 0.78 N ATOM 333 CA VAL 20 -4.611 2.476 0.915 1.00 0.78 C ATOM 334 C VAL 20 -5.910 1.751 0.548 1.00 0.78 C ATOM 335 O VAL 20 -6.777 1.547 1.399 1.00 0.78 O ATOM 336 CB VAL 20 -3.834 1.615 1.931 1.00 0.78 C ATOM 337 CG1 VAL 20 -3.665 0.258 1.408 1.00 0.78 C ATOM 338 CG2 VAL 20 -2.453 2.253 2.224 1.00 0.78 C ATOM 348 N ARG 21 -6.020 1.322 -0.717 1.00 0.64 N ATOM 349 CA ARG 21 -7.172 0.550 -1.180 1.00 0.64 C ATOM 350 C ARG 21 -6.739 -0.837 -1.622 1.00 0.64 C ATOM 351 O ARG 21 -6.171 -1.014 -2.705 1.00 0.64 O ATOM 352 CB ARG 21 -7.856 1.181 -2.381 1.00 0.64 C ATOM 353 CG ARG 21 -9.106 0.395 -2.849 1.00 0.64 C ATOM 354 CD ARG 21 -9.804 1.005 -4.038 1.00 0.64 C ATOM 355 NE ARG 21 -9.028 0.858 -5.291 1.00 0.64 N ATOM 356 CZ ARG 21 -9.095 -0.207 -6.128 1.00 0.64 C ATOM 357 NH1 ARG 21 -9.888 -1.241 -5.874 1.00 0.64 N ATOM 358 NH2 ARG 21 -8.346 -0.184 -7.204 1.00 0.64 N ATOM 372 N CYS 22 -6.975 -1.837 -0.792 1.00 0.58 N ATOM 373 CA CYS 22 -6.510 -3.163 -1.164 1.00 0.58 C ATOM 374 C CYS 22 -7.563 -3.846 -2.013 1.00 0.58 C ATOM 375 O CYS 22 -8.756 -3.701 -1.743 1.00 0.58 O ATOM 376 CB CYS 22 -6.180 -3.981 0.080 1.00 0.58 C ATOM 377 SG CYS 22 -4.815 -3.277 1.067 1.00 0.58 S ATOM 383 N ASP 23 -7.132 -4.609 -3.020 1.00 0.59 N ATOM 384 CA ASP 23 -8.067 -5.324 -3.874 1.00 0.59 C ATOM 385 C ASP 23 -7.554 -6.698 -4.281 1.00 0.59 C ATOM 386 O ASP 23 -6.798 -6.884 -5.252 1.00 0.59 O ATOM 387 CB ASP 23 -8.376 -4.474 -5.093 1.00 0.59 C ATOM 388 CG ASP 23 -9.419 -5.058 -6.058 1.00 0.59 C ATOM 389 OD1 ASP 23 -9.760 -6.257 -5.974 1.00 0.59 O ATOM 390 OD2 ASP 23 -9.914 -4.271 -6.865 1.00 0.59 O ATOM 395 N GLU 24 -8.077 -7.685 -3.579 1.00 0.30 N ATOM 396 CA GLU 24 -7.683 -9.066 -3.741 1.00 0.30 C ATOM 397 C GLU 24 -7.994 -9.620 -5.130 1.00 0.30 C ATOM 398 O GLU 24 -7.322 -10.550 -5.572 1.00 0.30 O ATOM 399 CB GLU 24 -8.378 -9.928 -2.683 1.00 0.30 C ATOM 400 CG GLU 24 -7.933 -9.659 -1.235 1.00 0.30 C ATOM 401 CD GLU 24 -6.498 -10.041 -0.917 1.00 0.30 C ATOM 402 OE1 GLU 24 -6.094 -11.163 -1.157 1.00 0.30 O ATOM 403 OE2 GLU 24 -5.768 -9.217 -0.404 1.00 0.30 O ATOM 410 N SER 25 -9.004 -9.078 -5.834 1.00 0.80 N ATOM 411 CA SER 25 -9.387 -9.683 -7.113 1.00 0.80 C ATOM 412 C SER 25 -8.304 -9.532 -8.179 1.00 0.80 C ATOM 413 O SER 25 -8.307 -10.255 -9.176 1.00 0.80 O ATOM 414 CB SER 25 -10.713 -9.127 -7.624 1.00 0.80 C ATOM 415 OG SER 25 -10.614 -7.795 -8.048 1.00 0.80 O ATOM 421 N ASN 26 -7.381 -8.589 -7.972 1.00 0.09 N ATOM 422 CA ASN 26 -6.282 -8.378 -8.899 1.00 0.09 C ATOM 423 C ASN 26 -4.952 -8.589 -8.189 1.00 0.09 C ATOM 424 O ASN 26 -3.901 -8.195 -8.697 1.00 0.09 O ATOM 425 CB ASN 26 -6.365 -6.996 -9.515 1.00 0.09 C ATOM 426 CG ASN 26 -7.525 -6.842 -10.462 1.00 0.09 C ATOM 427 OD1 ASN 26 -7.475 -7.341 -11.594 1.00 0.09 O ATOM 428 ND2 ASN 26 -8.561 -6.168 -10.036 1.00 0.09 N ATOM 435 N HIS 27 -5.008 -9.185 -6.993 1.00 0.39 N ATOM 436 CA HIS 27 -3.826 -9.414 -6.171 1.00 0.39 C ATOM 437 C HIS 27 -3.002 -8.141 -5.990 1.00 0.39 C ATOM 438 O HIS 27 -1.773 -8.202 -6.039 1.00 0.39 O ATOM 439 CB HIS 27 -2.938 -10.494 -6.799 1.00 0.39 C ATOM 440 CG HIS 27 -3.636 -11.795 -6.999 1.00 0.39 C ATOM 441 ND1 HIS 27 -3.985 -12.622 -5.954 1.00 0.39 N ATOM 442 CD2 HIS 27 -4.066 -12.406 -8.125 1.00 0.39 C ATOM 443 CE1 HIS 27 -4.597 -13.692 -6.431 1.00 0.39 C ATOM 444 NE2 HIS 27 -4.657 -13.585 -7.746 1.00 0.39 N ATOM 452 N CYS 28 -3.650 -6.995 -5.756 1.00 0.23 N ATOM 453 CA CYS 28 -2.872 -5.762 -5.670 1.00 0.23 C ATOM 454 C CYS 28 -3.502 -4.695 -4.794 1.00 0.23 C ATOM 455 O CYS 28 -4.634 -4.848 -4.323 1.00 0.23 O ATOM 456 CB CYS 28 -2.706 -5.161 -7.063 1.00 0.23 C ATOM 457 SG CYS 28 -4.248 -4.577 -7.761 1.00 0.23 S ATOM 463 N VAL 29 -2.742 -3.618 -4.574 1.00 0.39 N ATOM 464 CA VAL 29 -3.209 -2.485 -3.779 1.00 0.39 C ATOM 465 C VAL 29 -2.961 -1.142 -4.468 1.00 0.39 C ATOM 466 O VAL 29 -1.877 -0.900 -5.009 1.00 0.39 O ATOM 467 CB VAL 29 -2.484 -2.448 -2.435 1.00 0.39 C ATOM 468 CG1 VAL 29 -2.993 -1.346 -1.605 1.00 0.39 C ATOM 469 CG2 VAL 29 -2.583 -3.773 -1.763 1.00 0.39 C ATOM 479 N GLU 30 -3.962 -0.265 -4.456 1.00 0.13 N ATOM 480 CA GLU 30 -3.787 1.086 -4.985 1.00 0.13 C ATOM 481 C GLU 30 -3.448 2.012 -3.810 1.00 0.13 C ATOM 482 O GLU 30 -4.205 2.080 -2.834 1.00 0.13 O ATOM 483 CB GLU 30 -5.059 1.549 -5.714 1.00 0.13 C ATOM 484 CG GLU 30 -4.980 2.941 -6.361 1.00 0.13 C ATOM 485 CD GLU 30 -6.274 3.346 -7.082 1.00 0.13 C ATOM 486 OE1 GLU 30 -7.229 2.592 -7.052 1.00 0.13 O ATOM 487 OE2 GLU 30 -6.304 4.417 -7.675 1.00 0.13 O ATOM 494 N VAL 31 -2.296 2.686 -3.863 1.00 0.36 N ATOM 495 CA VAL 31 -1.902 3.543 -2.747 1.00 0.36 C ATOM 496 C VAL 31 -1.598 4.981 -3.143 1.00 0.36 C ATOM 497 O VAL 31 -0.815 5.233 -4.060 1.00 0.36 O ATOM 498 CB VAL 31 -0.652 2.982 -2.040 1.00 0.36 C ATOM 499 CG1 VAL 31 -0.258 3.906 -0.900 1.00 0.36 C ATOM 500 CG2 VAL 31 -0.921 1.601 -1.552 1.00 0.36 C ATOM 510 N ARG 32 -2.193 5.935 -2.433 1.00 0.51 N ATOM 511 CA ARG 32 -1.872 7.336 -2.687 1.00 0.51 C ATOM 512 C ARG 32 -1.159 7.921 -1.493 1.00 0.51 C ATOM 513 O ARG 32 -1.678 7.880 -0.383 1.00 0.51 O ATOM 514 CB ARG 32 -3.094 8.196 -2.971 1.00 0.51 C ATOM 515 CG ARG 32 -2.739 9.692 -3.171 1.00 0.51 C ATOM 516 CD ARG 32 -3.915 10.545 -3.496 1.00 0.51 C ATOM 517 NE ARG 32 -3.547 11.979 -3.598 1.00 0.51 N ATOM 518 CZ ARG 32 -4.366 12.942 -4.087 1.00 0.51 C ATOM 519 NH1 ARG 32 -5.568 12.603 -4.516 1.00 0.51 N ATOM 520 NH2 ARG 32 -3.993 14.223 -4.152 1.00 0.51 N ATOM 534 N CYS 33 0.042 8.434 -1.698 1.00 0.08 N ATOM 535 CA CYS 33 0.773 9.024 -0.585 1.00 0.08 C ATOM 536 C CYS 33 1.010 10.484 -0.896 1.00 0.08 C ATOM 537 O CYS 33 1.663 10.823 -1.893 1.00 0.08 O ATOM 538 CB CYS 33 2.079 8.312 -0.302 1.00 0.08 C ATOM 539 SG CYS 33 1.925 6.518 0.075 1.00 0.08 S ATOM 544 N SER 34 0.468 11.360 -0.060 1.00 0.64 N ATOM 545 CA SER 34 0.523 12.787 -0.368 1.00 0.64 C ATOM 546 C SER 34 -0.082 12.958 -1.778 1.00 0.64 C ATOM 547 O SER 34 -1.237 12.583 -1.994 1.00 0.64 O ATOM 548 CB SER 34 1.949 13.316 -0.269 1.00 0.64 C ATOM 549 OG SER 34 1.962 14.719 -0.234 1.00 0.64 O ATOM 555 N ASP 35 0.690 13.488 -2.733 1.00 0.52 N ATOM 556 CA ASP 35 0.193 13.688 -4.100 1.00 0.52 C ATOM 557 C ASP 35 0.762 12.688 -5.127 1.00 0.52 C ATOM 558 O ASP 35 0.701 12.936 -6.334 1.00 0.52 O ATOM 559 CB ASP 35 0.461 15.118 -4.558 1.00 0.52 C ATOM 560 CG ASP 35 -0.336 16.141 -3.747 1.00 0.52 C ATOM 561 OD1 ASP 35 -1.510 15.910 -3.488 1.00 0.52 O ATOM 562 OD2 ASP 35 0.236 17.138 -3.377 1.00 0.52 O ATOM 567 N THR 36 1.317 11.572 -4.652 1.00 0.96 N ATOM 568 CA THR 36 1.906 10.557 -5.527 1.00 0.96 C ATOM 569 C THR 36 1.150 9.225 -5.454 1.00 0.96 C ATOM 570 O THR 36 0.493 8.932 -4.458 1.00 0.96 O ATOM 571 CB THR 36 3.380 10.356 -5.140 1.00 0.96 C ATOM 572 OG1 THR 36 3.464 9.895 -3.774 1.00 0.96 O ATOM 573 CG2 THR 36 4.130 11.665 -5.259 1.00 0.96 C ATOM 581 N LYS 37 1.285 8.374 -6.479 1.00 0.25 N ATOM 582 CA LYS 37 0.562 7.098 -6.455 1.00 0.25 C ATOM 583 C LYS 37 1.424 5.887 -6.784 1.00 0.25 C ATOM 584 O LYS 37 2.278 5.930 -7.675 1.00 0.25 O ATOM 585 CB LYS 37 -0.670 7.155 -7.362 1.00 0.25 C ATOM 586 CG LYS 37 -1.517 5.877 -7.340 1.00 0.25 C ATOM 587 CD LYS 37 -2.767 5.988 -8.186 1.00 0.25 C ATOM 588 CE LYS 37 -3.752 6.963 -7.558 1.00 0.25 C ATOM 589 NZ LYS 37 -5.072 6.907 -8.214 1.00 0.25 N ATOM 603 N TYR 38 1.192 4.815 -6.022 1.00 0.11 N ATOM 604 CA TYR 38 1.928 3.569 -6.128 1.00 0.11 C ATOM 605 C TYR 38 0.970 2.394 -6.308 1.00 0.11 C ATOM 606 O TYR 38 -0.152 2.406 -5.788 1.00 0.11 O ATOM 607 CB TYR 38 2.702 3.369 -4.821 1.00 0.11 C ATOM 608 CG TYR 38 3.515 4.572 -4.493 1.00 0.11 C ATOM 609 CD1 TYR 38 2.881 5.603 -3.814 1.00 0.11 C ATOM 610 CD2 TYR 38 4.836 4.692 -4.872 1.00 0.11 C ATOM 611 CE1 TYR 38 3.547 6.745 -3.542 1.00 0.11 C ATOM 612 CE2 TYR 38 5.516 5.861 -4.581 1.00 0.11 C ATOM 613 CZ TYR 38 4.863 6.889 -3.927 1.00 0.11 C ATOM 614 OH TYR 38 5.510 8.067 -3.664 1.00 0.11 O ATOM 624 N THR 39 1.412 1.358 -7.005 1.00 0.23 N ATOM 625 CA THR 39 0.620 0.137 -7.077 1.00 0.23 C ATOM 626 C THR 39 1.441 -0.972 -6.467 1.00 0.23 C ATOM 627 O THR 39 2.607 -1.155 -6.828 1.00 0.23 O ATOM 628 CB THR 39 0.205 -0.232 -8.511 1.00 0.23 C ATOM 629 OG1 THR 39 -0.584 0.832 -9.066 1.00 0.23 O ATOM 630 CG2 THR 39 -0.635 -1.531 -8.489 1.00 0.23 C ATOM 638 N LEU 40 0.853 -1.693 -5.530 1.00 0.54 N ATOM 639 CA LEU 40 1.593 -2.745 -4.871 1.00 0.54 C ATOM 640 C LEU 40 1.107 -4.088 -5.353 1.00 0.54 C ATOM 641 O LEU 40 -0.093 -4.283 -5.543 1.00 0.54 O ATOM 642 CB LEU 40 1.380 -2.646 -3.378 1.00 0.54 C ATOM 643 CG LEU 40 1.640 -1.258 -2.789 1.00 0.54 C ATOM 644 CD1 LEU 40 1.332 -1.312 -1.343 1.00 0.54 C ATOM 645 CD2 LEU 40 3.076 -0.827 -3.064 1.00 0.54 C ATOM 657 N CYS 41 2.030 -5.020 -5.497 1.00 0.47 N ATOM 658 CA CYS 41 1.708 -6.381 -5.898 1.00 0.47 C ATOM 659 C CYS 41 2.940 -7.249 -5.679 1.00 0.47 C ATOM 660 O CYS 41 2.974 -8.029 -4.727 1.00 0.47 O ATOM 661 OXT CYS 41 4.014 -6.755 -6.032 1.00 0.47 O ATOM 662 CB CYS 41 1.270 -6.438 -7.365 1.00 0.47 C ATOM 663 SG CYS 41 0.728 -8.074 -7.909 1.00 0.47 S TER END