####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 334), selected 41 , name T0955TS351_1 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS351_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 2.81 2.81 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 17 - 38 2.00 3.20 LCS_AVERAGE: 51.22 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 2 - 16 0.76 4.76 LCS_AVERAGE: 28.61 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 21 41 3 3 4 9 16 19 24 27 32 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 15 21 41 8 13 17 20 23 28 32 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 15 21 41 8 13 17 20 25 31 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 15 21 41 8 13 17 20 25 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 15 21 41 8 13 17 20 26 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 15 21 41 8 13 17 20 26 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 15 21 41 8 13 17 20 27 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 15 21 41 8 13 17 20 27 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 15 21 41 8 13 17 20 27 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 15 21 41 8 13 17 20 27 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 15 21 41 8 13 17 20 27 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 15 21 41 8 13 17 20 27 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 15 21 41 7 13 17 20 27 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 15 21 41 6 13 17 20 27 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 15 21 41 5 13 16 17 21 28 32 37 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 15 21 41 5 8 15 17 19 25 28 33 37 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 8 22 41 3 7 15 19 27 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 8 22 41 3 10 15 20 27 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 8 22 41 4 10 15 20 27 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 8 22 41 4 10 15 19 27 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 13 22 41 5 10 15 19 27 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 13 22 41 3 7 15 18 27 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 13 22 41 3 8 15 18 27 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 13 22 41 4 8 15 18 27 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 13 22 41 4 10 15 19 27 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 13 22 41 4 8 15 19 26 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 13 22 41 3 10 15 19 26 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 13 22 41 4 10 15 19 27 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 13 22 41 5 13 17 20 27 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 13 22 41 6 13 17 20 27 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 13 22 41 6 10 17 20 27 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 13 22 41 6 10 17 20 27 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 13 22 41 6 10 15 20 27 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 8 22 41 1 7 14 19 27 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 8 22 41 2 7 14 18 27 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 6 22 41 3 6 6 14 19 29 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 6 22 41 3 6 6 8 19 31 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 6 22 41 3 6 10 18 27 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 6 20 41 3 6 6 6 17 31 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 6 14 41 3 6 8 19 27 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 6 7 41 0 6 6 10 24 31 35 38 39 40 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 59.94 ( 28.61 51.22 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 13 17 20 27 32 35 38 39 40 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 19.51 31.71 41.46 48.78 65.85 78.05 85.37 92.68 95.12 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.33 0.60 0.95 1.17 1.73 2.00 2.19 2.40 2.49 2.62 2.81 2.81 2.81 2.81 2.81 2.81 2.81 2.81 2.81 2.81 GDT RMS_ALL_AT 4.47 4.39 3.56 3.44 3.20 2.95 2.90 2.88 2.85 2.83 2.81 2.81 2.81 2.81 2.81 2.81 2.81 2.81 2.81 2.81 # Checking swapping # possible swapping detected: F 15 F 15 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 7.525 0 0.645 0.739 10.133 0.000 0.000 10.133 LGA Q 2 Q 2 4.521 0 0.230 1.178 5.351 7.727 8.283 3.884 LGA E 3 E 3 3.332 0 0.062 0.939 5.548 23.636 13.131 5.241 LGA T 4 T 4 2.665 0 0.026 1.105 3.541 37.273 29.351 3.541 LGA R 5 R 5 2.061 0 0.037 0.767 5.302 48.182 22.479 5.009 LGA K 6 K 6 1.399 0 0.043 1.244 8.142 70.000 37.980 8.142 LGA K 7 K 7 1.005 0 0.059 0.666 5.522 73.636 39.394 5.522 LGA C 8 C 8 0.768 0 0.065 0.744 2.946 78.182 70.303 2.946 LGA T 9 T 9 1.414 0 0.034 0.101 2.086 61.818 53.506 2.019 LGA E 10 E 10 0.971 0 0.012 0.356 2.569 66.364 60.202 2.569 LGA M 11 M 11 2.180 0 0.046 0.892 3.106 35.909 33.182 3.106 LGA K 12 K 12 2.808 0 0.067 0.620 3.969 25.909 22.020 3.969 LGA K 13 K 13 2.350 0 0.034 1.040 5.616 32.727 23.434 5.200 LGA K 14 K 14 2.938 0 0.083 0.624 4.152 20.455 25.657 3.196 LGA F 15 F 15 5.115 0 0.511 1.334 7.502 1.364 4.132 5.062 LGA K 16 K 16 6.275 0 0.690 1.155 12.981 0.000 0.000 12.981 LGA N 17 N 17 2.612 0 0.479 1.031 4.616 33.636 30.227 4.616 LGA C 18 C 18 1.342 0 0.039 0.063 1.751 58.182 58.182 1.564 LGA E 19 E 19 1.530 0 0.229 0.829 4.898 65.909 40.606 4.898 LGA V 20 V 20 2.186 0 0.085 0.116 3.241 38.636 31.169 3.241 LGA R 21 R 21 2.215 0 0.051 1.712 7.988 38.182 23.636 5.589 LGA C 22 C 22 3.033 0 0.042 0.168 3.625 25.000 21.515 3.625 LGA D 23 D 23 3.049 0 0.060 0.625 4.466 22.727 22.955 1.674 LGA E 24 E 24 2.801 0 0.114 0.557 3.682 32.727 27.071 3.235 LGA S 25 S 25 2.478 0 0.030 0.082 4.304 35.455 26.364 4.304 LGA N 26 N 26 2.642 0 0.674 0.703 3.688 33.636 27.500 2.379 LGA H 27 H 27 1.940 0 0.139 0.197 4.009 45.000 32.727 3.930 LGA C 28 C 28 1.100 0 0.080 0.103 2.156 65.909 61.212 2.156 LGA V 29 V 29 0.991 0 0.165 1.147 3.233 82.273 66.234 3.233 LGA E 30 E 30 0.742 0 0.056 0.307 1.558 77.727 71.313 1.558 LGA V 31 V 31 0.835 0 0.026 0.065 1.323 81.818 74.805 1.185 LGA R 32 R 32 0.521 0 0.192 1.265 3.609 77.727 64.132 1.669 LGA C 33 C 33 0.387 0 0.449 0.501 1.831 87.727 85.758 0.584 LGA S 34 S 34 2.292 0 0.287 0.766 3.815 31.818 32.121 2.452 LGA D 35 D 35 2.462 0 0.617 1.076 3.686 33.182 25.909 3.418 LGA T 36 T 36 3.598 0 0.583 0.880 8.166 17.273 10.130 4.966 LGA K 37 K 37 3.191 0 0.094 1.472 13.375 19.545 8.687 13.375 LGA Y 38 Y 38 2.622 0 0.072 1.317 12.004 25.909 9.091 12.004 LGA T 39 T 39 3.894 0 0.180 0.198 7.559 12.273 7.013 7.559 LGA L 40 L 40 2.462 0 0.216 0.951 8.350 31.364 16.364 6.670 LGA C 41 C 41 3.443 1 0.245 0.921 7.130 30.455 17.403 7.130 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 334 99.70 41 41 SUMMARY(RMSD_GDC): 2.812 2.783 3.881 41.153 32.565 17.871 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 38 2.40 68.293 69.298 1.522 LGA_LOCAL RMSD: 2.397 Number of atoms: 38 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.882 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 2.812 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.027390 * X + 0.443835 * Y + -0.895690 * Z + -0.374967 Y_new = -0.882198 * X + 0.410631 * Y + 0.230454 * Z + -0.195187 Z_new = 0.470081 * X + 0.796488 * Y + 0.380303 * Z + -1.041240 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.601833 -0.489383 1.125330 [DEG: -91.7783 -28.0396 64.4767 ] ZXZ: -1.822627 1.180672 0.533177 [DEG: -104.4288 67.6475 30.5488 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS351_1 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS351_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 38 2.40 69.298 2.81 REMARK ---------------------------------------------------------- MOLECULE T0955TS351_1 PFRMAT TS TARGET T0955 MODEL 1 PARENT N/A ATOM 1 N SER 1 -4.544 -12.993 3.676 1.00 0.00 N ATOM 2 CA SER 1 -4.872 -11.617 4.148 1.00 0.00 C ATOM 3 C SER 1 -3.641 -10.944 4.769 1.00 0.00 C ATOM 4 O SER 1 -3.478 -9.723 4.651 1.00 0.00 O ATOM 8 CB SER 1 -6.019 -11.657 5.160 1.00 0.00 C ATOM 10 OG SER 1 -5.625 -12.316 6.352 1.00 0.00 O ATOM 11 N GLN 2 -2.784 -11.750 5.414 1.00 0.00 N ATOM 12 CA GLN 2 -1.540 -11.304 6.081 1.00 0.00 C ATOM 13 C GLN 2 -0.424 -10.801 5.138 1.00 0.00 C ATOM 14 O GLN 2 0.258 -9.819 5.455 1.00 0.00 O ATOM 16 CB GLN 2 -0.955 -12.432 6.933 1.00 0.00 C ATOM 17 CD GLN 2 -1.218 -13.950 8.935 1.00 0.00 C ATOM 18 CG GLN 2 -1.785 -12.777 8.159 1.00 0.00 C ATOM 19 OE1 GLN 2 -0.524 -14.799 8.375 1.00 0.00 O ATOM 22 NE2 GLN 2 -1.512 -13.999 10.229 1.00 0.00 N ATOM 23 N GLU 3 -0.278 -11.468 3.983 1.00 0.00 N ATOM 24 CA GLU 3 0.730 -11.142 2.949 1.00 0.00 C ATOM 25 C GLU 3 0.459 -9.791 2.263 1.00 0.00 C ATOM 26 O GLU 3 1.393 -9.010 2.045 1.00 0.00 O ATOM 28 CB GLU 3 0.786 -12.245 1.889 1.00 0.00 C ATOM 29 CD GLU 3 1.343 -14.644 1.331 1.00 0.00 C ATOM 30 CG GLU 3 1.359 -13.560 2.390 1.00 0.00 C ATOM 31 OE1 GLU 3 0.713 -14.432 0.274 1.00 0.00 O ATOM 32 OE2 GLU 3 1.960 -15.706 1.559 1.00 0.00 O ATOM 33 N THR 4 -0.824 -9.516 1.977 1.00 0.00 N ATOM 34 CA THR 4 -1.286 -8.268 1.332 1.00 0.00 C ATOM 35 C THR 4 -1.094 -7.054 2.266 1.00 0.00 C ATOM 36 O THR 4 -0.685 -5.975 1.813 1.00 0.00 O ATOM 38 CB THR 4 -2.765 -8.361 0.915 1.00 0.00 C ATOM 40 OG1 THR 4 -2.931 -9.423 -0.033 1.00 0.00 O ATOM 41 CG2 THR 4 -3.221 -7.060 0.273 1.00 0.00 C ATOM 42 N ARG 5 -1.350 -7.267 3.568 1.00 0.00 N ATOM 43 CA ARG 5 -1.206 -6.246 4.627 1.00 0.00 C ATOM 44 C ARG 5 0.263 -5.873 4.894 1.00 0.00 C ATOM 45 O ARG 5 0.581 -4.690 5.038 1.00 0.00 O ATOM 47 CB ARG 5 -1.850 -6.729 5.929 1.00 0.00 C ATOM 48 CD ARG 5 -3.953 -6.988 7.273 1.00 0.00 C ATOM 50 NE ARG 5 -3.551 -8.261 7.864 1.00 0.00 N ATOM 51 CG ARG 5 -3.368 -6.795 5.883 1.00 0.00 C ATOM 52 CZ ARG 5 -4.204 -9.406 7.688 1.00 0.00 C ATOM 55 NH1 ARG 5 -3.764 -10.516 8.266 1.00 0.00 N ATOM 58 NH2 ARG 5 -5.296 -9.438 6.937 1.00 0.00 N ATOM 59 N LYS 6 1.145 -6.885 4.921 1.00 0.00 N ATOM 60 CA LYS 6 2.599 -6.715 5.146 1.00 0.00 C ATOM 61 C LYS 6 3.272 -5.992 3.966 1.00 0.00 C ATOM 62 O LYS 6 4.150 -5.143 4.173 1.00 0.00 O ATOM 64 CB LYS 6 3.268 -8.071 5.376 1.00 0.00 C ATOM 65 CD LYS 6 3.596 -10.072 6.856 1.00 0.00 C ATOM 66 CE LYS 6 3.238 -10.724 8.181 1.00 0.00 C ATOM 67 CG LYS 6 2.908 -8.725 6.700 1.00 0.00 C ATOM 71 NZ LYS 6 3.871 -12.064 8.329 1.00 0.00 N ATOM 72 N LYS 7 2.818 -6.312 2.744 1.00 0.00 N ATOM 73 CA LYS 7 3.315 -5.716 1.487 1.00 0.00 C ATOM 74 C LYS 7 2.933 -4.232 1.374 1.00 0.00 C ATOM 75 O LYS 7 3.775 -3.404 1.006 1.00 0.00 O ATOM 77 CB LYS 7 2.773 -6.484 0.280 1.00 0.00 C ATOM 78 CD LYS 7 2.769 -8.587 -1.092 1.00 0.00 C ATOM 79 CE LYS 7 3.356 -9.980 -1.256 1.00 0.00 C ATOM 80 CG LYS 7 3.359 -7.878 0.117 1.00 0.00 C ATOM 84 NZ LYS 7 2.756 -10.703 -2.411 1.00 0.00 N ATOM 85 N CYS 8 1.680 -3.909 1.731 1.00 0.00 N ATOM 86 CA CYS 8 1.145 -2.535 1.695 1.00 0.00 C ATOM 87 C CYS 8 1.777 -1.609 2.747 1.00 0.00 C ATOM 88 O CYS 8 2.042 -0.441 2.452 1.00 0.00 O ATOM 90 CB CYS 8 -0.373 -2.546 1.892 1.00 0.00 C ATOM 91 SG CYS 8 -1.301 -3.237 0.503 1.00 0.00 S ATOM 92 N THR 9 2.026 -2.149 3.952 1.00 0.00 N ATOM 93 CA THR 9 2.647 -1.420 5.082 1.00 0.00 C ATOM 94 C THR 9 4.129 -1.100 4.761 1.00 0.00 C ATOM 95 O THR 9 4.617 -0.019 5.114 1.00 0.00 O ATOM 97 CB THR 9 2.555 -2.226 6.392 1.00 0.00 C ATOM 99 OG1 THR 9 1.180 -2.446 6.725 1.00 0.00 O ATOM 100 CG2 THR 9 3.216 -1.465 7.531 1.00 0.00 C ATOM 101 N GLU 10 4.807 -2.031 4.072 1.00 0.00 N ATOM 102 CA GLU 10 6.221 -1.897 3.661 1.00 0.00 C ATOM 103 C GLU 10 6.364 -0.784 2.595 1.00 0.00 C ATOM 104 O GLU 10 7.269 0.054 2.691 1.00 0.00 O ATOM 106 CB GLU 10 6.751 -3.228 3.124 1.00 0.00 C ATOM 107 CD GLU 10 8.737 -4.562 2.314 1.00 0.00 C ATOM 108 CG GLU 10 8.224 -3.203 2.748 1.00 0.00 C ATOM 109 OE1 GLU 10 8.163 -5.581 2.752 1.00 0.00 O ATOM 110 OE2 GLU 10 9.714 -4.608 1.537 1.00 0.00 O ATOM 111 N MET 11 5.452 -0.785 1.608 1.00 0.00 N ATOM 112 CA MET 11 5.403 0.209 0.513 1.00 0.00 C ATOM 113 C MET 11 4.993 1.600 1.030 1.00 0.00 C ATOM 114 O MET 11 5.510 2.618 0.556 1.00 0.00 O ATOM 116 CB MET 11 4.433 -0.246 -0.579 1.00 0.00 C ATOM 117 SD MET 11 6.474 -1.198 -2.193 1.00 0.00 S ATOM 118 CE MET 11 6.002 0.018 -3.420 1.00 0.00 C ATOM 119 CG MET 11 4.900 -1.466 -1.355 1.00 0.00 C ATOM 120 N LYS 12 4.089 1.610 2.024 1.00 0.00 N ATOM 121 CA LYS 12 3.554 2.822 2.685 1.00 0.00 C ATOM 122 C LYS 12 4.683 3.556 3.445 1.00 0.00 C ATOM 123 O LYS 12 4.799 4.780 3.347 1.00 0.00 O ATOM 125 CB LYS 12 2.415 2.455 3.637 1.00 0.00 C ATOM 126 CD LYS 12 0.605 3.219 5.199 1.00 0.00 C ATOM 127 CE LYS 12 -0.024 4.409 5.905 1.00 0.00 C ATOM 128 CG LYS 12 1.778 3.647 4.333 1.00 0.00 C ATOM 132 NZ LYS 12 -1.176 4.005 6.758 1.00 0.00 N ATOM 133 N LYS 13 5.492 2.793 4.197 1.00 0.00 N ATOM 134 CA LYS 13 6.627 3.315 4.980 1.00 0.00 C ATOM 135 C LYS 13 7.807 3.816 4.126 1.00 0.00 C ATOM 136 O LYS 13 8.345 4.897 4.392 1.00 0.00 O ATOM 138 CB LYS 13 7.149 2.247 5.944 1.00 0.00 C ATOM 139 CD LYS 13 8.713 1.632 7.808 1.00 0.00 C ATOM 140 CE LYS 13 9.872 2.092 8.677 1.00 0.00 C ATOM 141 CG LYS 13 8.299 2.712 6.821 1.00 0.00 C ATOM 145 NZ LYS 13 10.288 1.043 9.648 1.00 0.00 N ATOM 146 N LYS 14 8.193 3.025 3.114 1.00 0.00 N ATOM 147 CA LYS 14 9.314 3.333 2.201 1.00 0.00 C ATOM 148 C LYS 14 9.154 4.482 1.181 1.00 0.00 C ATOM 149 O LYS 14 10.040 5.338 1.096 1.00 0.00 O ATOM 151 CB LYS 14 9.690 2.100 1.378 1.00 0.00 C ATOM 152 CD LYS 14 10.690 -0.202 1.308 1.00 0.00 C ATOM 153 CE LYS 14 11.347 -1.309 2.116 1.00 0.00 C ATOM 154 CG LYS 14 10.358 0.997 2.183 1.00 0.00 C ATOM 158 NZ LYS 14 11.637 -2.508 1.282 1.00 0.00 N ATOM 159 N PHE 15 8.041 4.503 0.428 1.00 0.00 N ATOM 160 CA PHE 15 7.779 5.534 -0.602 1.00 0.00 C ATOM 161 C PHE 15 7.425 6.973 -0.182 1.00 0.00 C ATOM 162 O PHE 15 8.079 7.913 -0.646 1.00 0.00 O ATOM 164 CB PHE 15 6.636 5.095 -1.520 1.00 0.00 C ATOM 165 CG PHE 15 6.301 6.093 -2.591 1.00 0.00 C ATOM 166 CZ PHE 15 5.678 7.941 -4.571 1.00 0.00 C ATOM 167 CD1 PHE 15 7.086 6.201 -3.726 1.00 0.00 C ATOM 168 CE1 PHE 15 6.780 7.119 -4.712 1.00 0.00 C ATOM 169 CD2 PHE 15 5.202 6.923 -2.465 1.00 0.00 C ATOM 170 CE2 PHE 15 4.895 7.841 -3.452 1.00 0.00 C ATOM 171 N LYS 16 6.442 7.121 0.724 1.00 0.00 N ATOM 172 CA LYS 16 5.925 8.409 1.269 1.00 0.00 C ATOM 173 C LYS 16 4.731 8.118 2.193 1.00 0.00 C ATOM 174 O LYS 16 4.247 6.982 2.226 1.00 0.00 O ATOM 176 CB LYS 16 5.528 9.350 0.130 1.00 0.00 C ATOM 177 CD LYS 16 4.785 11.637 -0.590 1.00 0.00 C ATOM 178 CE LYS 16 4.356 13.020 -0.129 1.00 0.00 C ATOM 179 CG LYS 16 5.084 10.729 0.592 1.00 0.00 C ATOM 183 NZ LYS 16 4.055 13.920 -1.276 1.00 0.00 N ATOM 184 N ASN 17 4.237 9.150 2.897 1.00 0.00 N ATOM 185 CA ASN 17 3.089 9.054 3.821 1.00 0.00 C ATOM 186 C ASN 17 1.760 9.088 3.011 1.00 0.00 C ATOM 187 O ASN 17 1.025 10.087 3.021 1.00 0.00 O ATOM 189 CB ASN 17 3.140 10.179 4.858 1.00 0.00 C ATOM 190 CG ASN 17 2.119 9.999 5.962 1.00 0.00 C ATOM 191 OD1 ASN 17 1.631 8.893 6.197 1.00 0.00 O ATOM 194 ND2 ASN 17 1.793 11.088 6.648 1.00 0.00 N ATOM 195 N CYS 18 1.501 7.982 2.297 1.00 0.00 N ATOM 196 CA CYS 18 0.313 7.792 1.444 1.00 0.00 C ATOM 197 C CYS 18 -0.625 6.731 2.057 1.00 0.00 C ATOM 198 O CYS 18 -0.206 5.992 2.952 1.00 0.00 O ATOM 200 CB CYS 18 0.728 7.386 0.029 1.00 0.00 C ATOM 201 SG CYS 18 1.752 8.605 -0.827 1.00 0.00 S ATOM 202 N GLU 19 -1.883 6.680 1.588 1.00 0.00 N ATOM 203 CA GLU 19 -2.910 5.720 2.058 1.00 0.00 C ATOM 204 C GLU 19 -3.025 4.476 1.153 1.00 0.00 C ATOM 205 O GLU 19 -3.025 4.617 -0.069 1.00 0.00 O ATOM 207 CB GLU 19 -4.277 6.400 2.151 1.00 0.00 C ATOM 208 CD GLU 19 -5.722 8.145 3.267 1.00 0.00 C ATOM 209 CG GLU 19 -4.348 7.509 3.188 1.00 0.00 C ATOM 210 OE1 GLU 19 -6.549 7.887 2.367 1.00 0.00 O ATOM 211 OE2 GLU 19 -5.973 8.900 4.231 1.00 0.00 O ATOM 212 N VAL 20 -3.215 3.295 1.760 1.00 0.00 N ATOM 213 CA VAL 20 -3.314 2.016 1.026 1.00 0.00 C ATOM 214 C VAL 20 -4.708 1.357 0.980 1.00 0.00 C ATOM 215 O VAL 20 -5.399 1.255 2.004 1.00 0.00 O ATOM 217 CB VAL 20 -2.344 0.962 1.595 1.00 0.00 C ATOM 218 CG1 VAL 20 -2.506 -0.360 0.861 1.00 0.00 C ATOM 219 CG2 VAL 20 -0.909 1.456 1.502 1.00 0.00 C ATOM 220 N ARG 21 -5.114 0.975 -0.240 1.00 0.00 N ATOM 221 CA ARG 21 -6.378 0.275 -0.535 1.00 0.00 C ATOM 222 C ARG 21 -5.945 -1.000 -1.283 1.00 0.00 C ATOM 223 O ARG 21 -5.226 -0.905 -2.286 1.00 0.00 O ATOM 225 CB ARG 21 -7.312 1.174 -1.347 1.00 0.00 C ATOM 226 CD ARG 21 -8.749 3.230 -1.448 1.00 0.00 C ATOM 228 NE ARG 21 -9.286 4.373 -0.715 1.00 0.00 N ATOM 229 CG ARG 21 -7.805 2.398 -0.593 1.00 0.00 C ATOM 230 CZ ARG 21 -8.717 5.574 -0.684 1.00 0.00 C ATOM 233 NH1 ARG 21 -9.277 6.556 0.010 1.00 0.00 N ATOM 236 NH2 ARG 21 -7.589 5.791 -1.345 1.00 0.00 N ATOM 237 N CYS 22 -6.384 -2.170 -0.802 1.00 0.00 N ATOM 238 CA CYS 22 -6.003 -3.464 -1.394 1.00 0.00 C ATOM 239 C CYS 22 -7.157 -4.245 -2.034 1.00 0.00 C ATOM 240 O CYS 22 -8.317 -4.103 -1.628 1.00 0.00 O ATOM 242 CB CYS 22 -5.349 -4.362 -0.342 1.00 0.00 C ATOM 243 SG CYS 22 -3.830 -3.693 0.373 1.00 0.00 S ATOM 244 N ASP 23 -6.803 -5.063 -3.035 1.00 0.00 N ATOM 245 CA ASP 23 -7.724 -5.919 -3.803 1.00 0.00 C ATOM 246 C ASP 23 -7.577 -7.403 -3.398 1.00 0.00 C ATOM 247 O ASP 23 -6.585 -7.768 -2.755 1.00 0.00 O ATOM 249 CB ASP 23 -7.478 -5.761 -5.305 1.00 0.00 C ATOM 250 CG ASP 23 -7.832 -4.375 -5.809 1.00 0.00 C ATOM 251 OD1 ASP 23 -8.612 -3.676 -5.129 1.00 0.00 O ATOM 252 OD2 ASP 23 -7.329 -3.989 -6.885 1.00 0.00 O ATOM 253 N GLU 24 -8.562 -8.231 -3.774 1.00 0.00 N ATOM 254 CA GLU 24 -8.586 -9.676 -3.470 1.00 0.00 C ATOM 255 C GLU 24 -8.235 -10.541 -4.700 1.00 0.00 C ATOM 256 O GLU 24 -8.083 -11.766 -4.580 1.00 0.00 O ATOM 258 CB GLU 24 -9.959 -10.088 -2.935 1.00 0.00 C ATOM 259 CD GLU 24 -11.691 -9.876 -1.108 1.00 0.00 C ATOM 260 CG GLU 24 -10.323 -9.449 -1.605 1.00 0.00 C ATOM 261 OE1 GLU 24 -12.382 -10.617 -1.837 1.00 0.00 O ATOM 262 OE2 GLU 24 -12.071 -9.470 0.010 1.00 0.00 O ATOM 263 N SER 25 -8.056 -9.884 -5.857 1.00 0.00 N ATOM 264 CA SER 25 -7.718 -10.538 -7.136 1.00 0.00 C ATOM 265 C SER 25 -6.200 -10.709 -7.347 1.00 0.00 C ATOM 266 O SER 25 -5.742 -11.815 -7.656 1.00 0.00 O ATOM 268 CB SER 25 -8.299 -9.747 -8.312 1.00 0.00 C ATOM 270 OG SER 25 -9.716 -9.766 -8.290 1.00 0.00 O ATOM 271 N ASN 26 -5.441 -9.613 -7.179 1.00 0.00 N ATOM 272 CA ASN 26 -3.972 -9.595 -7.323 1.00 0.00 C ATOM 273 C ASN 26 -3.279 -9.270 -5.984 1.00 0.00 C ATOM 274 O ASN 26 -3.957 -8.926 -5.009 1.00 0.00 O ATOM 276 CB ASN 26 -3.552 -8.592 -8.400 1.00 0.00 C ATOM 277 CG ASN 26 -3.917 -7.165 -8.043 1.00 0.00 C ATOM 278 OD1 ASN 26 -3.672 -6.714 -6.923 1.00 0.00 O ATOM 281 ND2 ASN 26 -4.507 -6.451 -8.994 1.00 0.00 N ATOM 282 N HIS 27 -1.944 -9.398 -5.950 1.00 0.00 N ATOM 283 CA HIS 27 -1.113 -9.136 -4.759 1.00 0.00 C ATOM 284 C HIS 27 -0.712 -7.648 -4.637 1.00 0.00 C ATOM 285 O HIS 27 0.059 -7.275 -3.739 1.00 0.00 O ATOM 287 CB HIS 27 0.148 -10.001 -4.785 1.00 0.00 C ATOM 288 CG HIS 27 -0.123 -11.468 -4.652 1.00 0.00 C ATOM 289 ND1 HIS 27 -0.564 -12.041 -3.480 1.00 0.00 N ATOM 290 CE1 HIS 27 -0.716 -13.364 -3.668 1.00 0.00 C ATOM 291 CD2 HIS 27 -0.041 -12.623 -5.535 1.00 0.00 C ATOM 293 NE2 HIS 27 -0.405 -13.719 -4.899 1.00 0.00 N ATOM 294 N CYS 28 -1.292 -6.809 -5.507 1.00 0.00 N ATOM 295 CA CYS 28 -1.027 -5.360 -5.548 1.00 0.00 C ATOM 296 C CYS 28 -2.001 -4.484 -4.752 1.00 0.00 C ATOM 297 O CYS 28 -3.202 -4.775 -4.676 1.00 0.00 O ATOM 299 CB CYS 28 -1.027 -4.856 -6.992 1.00 0.00 C ATOM 300 SG CYS 28 0.282 -5.553 -8.026 1.00 0.00 S ATOM 301 N VAL 29 -1.438 -3.427 -4.155 1.00 0.00 N ATOM 302 CA VAL 29 -2.139 -2.423 -3.344 1.00 0.00 C ATOM 303 C VAL 29 -1.968 -1.061 -4.055 1.00 0.00 C ATOM 304 O VAL 29 -0.950 -0.847 -4.720 1.00 0.00 O ATOM 306 CB VAL 29 -1.604 -2.389 -1.901 1.00 0.00 C ATOM 307 CG1 VAL 29 -1.834 -3.727 -1.216 1.00 0.00 C ATOM 308 CG2 VAL 29 -0.127 -2.027 -1.889 1.00 0.00 C ATOM 309 N GLU 30 -2.967 -0.178 -3.938 1.00 0.00 N ATOM 310 CA GLU 30 -2.906 1.166 -4.536 1.00 0.00 C ATOM 311 C GLU 30 -2.737 2.144 -3.374 1.00 0.00 C ATOM 312 O GLU 30 -3.488 2.093 -2.389 1.00 0.00 O ATOM 314 CB GLU 30 -4.165 1.443 -5.361 1.00 0.00 C ATOM 315 CD GLU 30 -5.404 3.013 -6.904 1.00 0.00 C ATOM 316 CG GLU 30 -4.166 2.795 -6.056 1.00 0.00 C ATOM 317 OE1 GLU 30 -5.690 2.158 -7.767 1.00 0.00 O ATOM 318 OE2 GLU 30 -6.088 4.039 -6.704 1.00 0.00 O ATOM 319 N VAL 31 -1.715 2.998 -3.490 1.00 0.00 N ATOM 320 CA VAL 31 -1.368 4.002 -2.477 1.00 0.00 C ATOM 321 C VAL 31 -1.578 5.391 -3.108 1.00 0.00 C ATOM 322 O VAL 31 -1.115 5.648 -4.229 1.00 0.00 O ATOM 324 CB VAL 31 0.074 3.817 -1.970 1.00 0.00 C ATOM 325 CG1 VAL 31 0.427 4.900 -0.961 1.00 0.00 C ATOM 326 CG2 VAL 31 0.253 2.437 -1.360 1.00 0.00 C ATOM 327 N ARG 32 -2.323 6.248 -2.397 1.00 0.00 N ATOM 328 CA ARG 32 -2.650 7.617 -2.831 1.00 0.00 C ATOM 329 C ARG 32 -2.024 8.648 -1.879 1.00 0.00 C ATOM 330 O ARG 32 -2.157 8.522 -0.654 1.00 0.00 O ATOM 332 CB ARG 32 -4.167 7.810 -2.901 1.00 0.00 C ATOM 333 CD ARG 32 -6.353 7.197 -3.971 1.00 0.00 C ATOM 335 NE ARG 32 -7.033 6.358 -4.955 1.00 0.00 N ATOM 336 CG ARG 32 -4.854 6.946 -3.946 1.00 0.00 C ATOM 337 CZ ARG 32 -8.346 6.361 -5.160 1.00 0.00 C ATOM 340 NH1 ARG 32 -8.875 5.564 -6.077 1.00 0.00 N ATOM 343 NH2 ARG 32 -9.126 7.162 -4.448 1.00 0.00 N ATOM 344 N CYS 33 -1.339 9.647 -2.453 1.00 0.00 N ATOM 345 CA CYS 33 -0.662 10.723 -1.705 1.00 0.00 C ATOM 346 C CYS 33 -1.368 12.083 -1.879 1.00 0.00 C ATOM 347 O CYS 33 -2.325 12.186 -2.655 1.00 0.00 O ATOM 349 CB CYS 33 0.798 10.844 -2.144 1.00 0.00 C ATOM 350 SG CYS 33 1.788 9.357 -1.865 1.00 0.00 S ATOM 351 N SER 34 -0.872 13.111 -1.171 1.00 0.00 N ATOM 352 CA SER 34 -1.401 14.491 -1.202 1.00 0.00 C ATOM 353 C SER 34 -1.148 15.192 -2.557 1.00 0.00 C ATOM 354 O SER 34 -1.720 16.257 -2.835 1.00 0.00 O ATOM 356 CB SER 34 -0.785 15.326 -0.078 1.00 0.00 C ATOM 358 OG SER 34 0.602 15.524 -0.290 1.00 0.00 O ATOM 359 N ASP 35 -0.321 14.549 -3.393 1.00 0.00 N ATOM 360 CA ASP 35 0.057 15.020 -4.738 1.00 0.00 C ATOM 361 C ASP 35 -0.714 14.175 -5.786 1.00 0.00 C ATOM 362 O ASP 35 -1.597 13.392 -5.413 1.00 0.00 O ATOM 364 CB ASP 35 1.570 14.917 -4.937 1.00 0.00 C ATOM 365 CG ASP 35 2.061 13.482 -4.933 1.00 0.00 C ATOM 366 OD1 ASP 35 1.227 12.568 -5.097 1.00 0.00 O ATOM 367 OD2 ASP 35 3.282 13.273 -4.766 1.00 0.00 O ATOM 368 N THR 36 -0.376 14.342 -7.075 1.00 0.00 N ATOM 369 CA THR 36 -1.005 13.627 -8.207 1.00 0.00 C ATOM 370 C THR 36 -0.399 12.222 -8.453 1.00 0.00 C ATOM 371 O THR 36 -0.808 11.510 -9.384 1.00 0.00 O ATOM 373 CB THR 36 -0.899 14.435 -9.513 1.00 0.00 C ATOM 375 OG1 THR 36 0.481 14.662 -9.827 1.00 0.00 O ATOM 376 CG2 THR 36 -1.593 15.780 -9.367 1.00 0.00 C ATOM 377 N LYS 37 0.513 11.813 -7.559 1.00 0.00 N ATOM 378 CA LYS 37 1.216 10.514 -7.623 1.00 0.00 C ATOM 379 C LYS 37 0.474 9.335 -6.973 1.00 0.00 C ATOM 380 O LYS 37 -0.191 9.503 -5.943 1.00 0.00 O ATOM 382 CB LYS 37 2.595 10.618 -6.969 1.00 0.00 C ATOM 383 CD LYS 37 4.913 11.579 -7.007 1.00 0.00 C ATOM 384 CE LYS 37 5.868 12.524 -7.718 1.00 0.00 C ATOM 385 CG LYS 37 3.557 11.544 -7.694 1.00 0.00 C ATOM 389 NZ LYS 37 7.186 12.604 -7.028 1.00 0.00 N ATOM 390 N TYR 38 0.581 8.162 -7.610 1.00 0.00 N ATOM 391 CA TYR 38 -0.024 6.903 -7.145 1.00 0.00 C ATOM 392 C TYR 38 1.072 5.829 -7.163 1.00 0.00 C ATOM 393 O TYR 38 1.807 5.711 -8.152 1.00 0.00 O ATOM 395 CB TYR 38 -1.214 6.522 -8.028 1.00 0.00 C ATOM 396 CG TYR 38 -2.342 7.529 -8.004 1.00 0.00 C ATOM 398 OH TYR 38 -5.436 10.305 -7.949 1.00 0.00 O ATOM 399 CZ TYR 38 -4.413 9.386 -7.965 1.00 0.00 C ATOM 400 CD1 TYR 38 -2.344 8.615 -8.869 1.00 0.00 C ATOM 401 CE1 TYR 38 -3.371 9.540 -8.854 1.00 0.00 C ATOM 402 CD2 TYR 38 -3.400 7.390 -7.115 1.00 0.00 C ATOM 403 CE2 TYR 38 -4.435 8.305 -7.086 1.00 0.00 C ATOM 404 N THR 39 1.202 5.091 -6.050 1.00 0.00 N ATOM 405 CA THR 39 2.197 4.014 -5.888 1.00 0.00 C ATOM 406 C THR 39 1.455 2.666 -5.827 1.00 0.00 C ATOM 407 O THR 39 0.319 2.603 -5.341 1.00 0.00 O ATOM 409 CB THR 39 3.054 4.222 -4.627 1.00 0.00 C ATOM 411 OG1 THR 39 3.764 5.463 -4.727 1.00 0.00 O ATOM 412 CG2 THR 39 4.065 3.095 -4.477 1.00 0.00 C ATOM 413 N LEU 40 2.081 1.622 -6.386 1.00 0.00 N ATOM 414 CA LEU 40 1.521 0.261 -6.424 1.00 0.00 C ATOM 415 C LEU 40 2.495 -0.783 -5.861 1.00 0.00 C ATOM 416 O LEU 40 3.694 -0.505 -5.739 1.00 0.00 O ATOM 418 CB LEU 40 1.136 -0.120 -7.855 1.00 0.00 C ATOM 419 CG LEU 40 0.080 0.759 -8.530 1.00 0.00 C ATOM 420 CD1 LEU 40 -0.075 0.383 -9.996 1.00 0.00 C ATOM 421 CD2 LEU 40 -1.254 0.646 -7.811 1.00 0.00 C ATOM 422 N CYS 41 1.966 -1.971 -5.529 1.00 0.00 N ATOM 423 CA CYS 41 2.733 -3.101 -4.972 1.00 0.00 C ATOM 424 C CYS 41 3.102 -4.128 -6.050 1.00 0.00 C ATOM 425 O CYS 41 4.182 -4.745 -5.929 1.00 0.00 O ATOM 427 CB CYS 41 1.941 -3.787 -3.857 1.00 0.00 C ATOM 428 SG CYS 41 2.862 -5.061 -2.962 1.00 0.00 S TER END