####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 09/2011 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 41 ( 335), selected 41 , name T0955TS377_1 # Molecule2: number of CA atoms 41 ( 665), selected 41 , name T0955.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS377_1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 41 1 - 41 2.13 2.13 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 36 6 - 41 1.95 2.23 LCS_AVERAGE: 84.95 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 2 - 15 0.44 4.51 LCS_AVERAGE: 27.31 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 41 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 1 S 1 3 24 41 4 8 22 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Q 2 Q 2 14 24 41 9 14 16 24 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 3 E 3 14 24 41 7 14 16 25 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 4 T 4 14 30 41 10 14 16 24 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 5 R 5 14 30 41 11 14 16 26 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 6 K 6 14 36 41 11 14 19 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 7 K 7 14 36 41 11 14 16 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 8 C 8 14 36 41 11 14 16 26 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 9 T 9 14 36 41 11 14 22 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 10 E 10 14 36 41 11 14 22 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT M 11 M 11 14 36 41 11 14 22 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 12 K 12 14 36 41 11 14 19 26 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 13 K 13 14 36 41 11 17 21 26 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 14 K 14 14 36 41 11 17 22 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT F 15 F 15 14 36 41 11 14 22 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 16 K 16 8 36 41 3 7 14 18 28 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 17 N 17 8 36 41 3 11 20 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 18 C 18 8 36 41 9 17 22 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 19 E 19 8 36 41 7 17 22 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 20 V 20 8 36 41 5 17 22 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 21 R 21 8 36 41 9 17 22 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 22 C 22 8 36 41 7 17 22 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 23 D 23 9 36 41 9 17 22 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 24 E 24 9 36 41 5 8 20 25 31 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 25 S 25 9 36 41 5 8 16 24 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT N 26 N 26 9 36 41 5 8 12 23 27 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT H 27 H 27 9 36 41 5 8 17 23 28 36 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 28 C 28 9 36 41 5 11 20 27 32 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 29 V 29 12 36 41 9 17 22 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT E 30 E 30 12 36 41 9 17 22 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT V 31 V 31 12 36 41 7 17 22 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT R 32 R 32 12 36 41 9 17 22 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 33 C 33 12 36 41 9 17 22 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT S 34 S 34 12 36 41 3 10 20 24 32 37 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT D 35 D 35 12 36 41 3 8 16 21 26 30 38 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 36 T 36 12 36 41 7 17 22 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT K 37 K 37 12 36 41 3 17 22 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT Y 38 Y 38 12 36 41 5 12 22 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT T 39 T 39 12 36 41 5 17 22 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT L 40 L 40 12 36 41 9 17 22 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_GDT C 41 C 41 6 36 41 4 11 20 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 LCS_AVERAGE LCS_A: 70.75 ( 27.31 84.95 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 17 22 27 33 38 40 41 41 41 41 41 41 41 41 41 41 41 41 41 GDT PERCENT_AT 26.83 41.46 53.66 65.85 80.49 92.68 97.56 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.30 0.59 1.03 1.39 1.65 1.96 2.05 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 GDT RMS_ALL_AT 5.00 2.79 2.45 2.25 2.33 2.16 2.14 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 2.13 # Checking swapping # possible swapping detected: E 3 E 3 # possible swapping detected: E 10 E 10 # possible swapping detected: E 19 E 19 # possible swapping detected: D 23 D 23 # possible swapping detected: E 24 E 24 # possible swapping detected: E 30 E 30 # possible swapping detected: D 35 D 35 # possible swapping detected: Y 38 Y 38 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all Dist_at LGA S 1 S 1 1.835 0 0.295 0.752 3.077 36.818 37.576 1.948 LGA Q 2 Q 2 2.916 0 0.213 1.382 4.479 30.000 19.596 3.622 LGA E 3 E 3 2.733 0 0.064 1.153 8.783 30.000 16.566 6.365 LGA T 4 T 4 3.046 0 0.041 1.085 5.634 25.000 18.442 5.634 LGA R 5 R 5 2.683 0 0.056 1.443 8.322 32.727 20.496 8.322 LGA K 6 K 6 1.372 0 0.027 1.258 6.774 61.818 38.384 6.714 LGA K 7 K 7 1.935 0 0.049 0.659 4.467 50.909 29.293 4.467 LGA C 8 C 8 2.385 0 0.051 0.751 6.143 41.364 30.606 6.143 LGA T 9 T 9 1.900 0 0.033 0.092 2.285 54.545 49.351 2.285 LGA E 10 E 10 1.167 0 0.026 0.975 7.341 69.545 37.778 7.341 LGA M 11 M 11 0.982 0 0.041 0.918 2.955 73.636 56.136 2.101 LGA K 12 K 12 2.304 0 0.114 0.620 3.457 38.636 38.182 3.457 LGA K 13 K 13 2.791 0 0.062 0.628 3.570 30.000 25.859 2.319 LGA K 14 K 14 1.840 0 0.128 0.647 3.710 47.727 41.010 1.916 LGA F 15 F 15 1.377 0 0.126 0.249 4.547 65.909 35.537 4.547 LGA K 16 K 16 3.174 0 0.669 1.555 5.533 18.636 16.566 3.905 LGA N 17 N 17 1.902 0 0.271 0.552 3.043 45.000 44.091 1.356 LGA C 18 C 18 1.060 0 0.012 0.058 1.412 65.455 65.455 1.015 LGA E 19 E 19 1.188 0 0.207 0.440 2.731 65.455 59.596 1.417 LGA V 20 V 20 2.063 0 0.053 0.077 2.525 38.636 38.442 2.305 LGA R 21 R 21 2.111 0 0.062 1.147 5.948 41.364 21.653 5.936 LGA C 22 C 22 2.020 0 0.139 0.942 4.019 48.182 41.515 4.019 LGA D 23 D 23 1.934 0 0.368 1.204 5.065 41.818 31.818 3.337 LGA E 24 E 24 2.799 0 0.082 0.594 5.386 25.909 14.343 5.386 LGA S 25 S 25 2.538 0 0.165 0.704 3.416 25.455 34.242 1.012 LGA N 26 N 26 3.472 0 0.047 1.182 5.318 17.273 11.818 5.318 LGA H 27 H 27 3.440 0 0.028 0.246 5.429 16.364 7.091 5.197 LGA C 28 C 28 1.817 0 0.111 0.141 2.481 51.364 49.091 2.481 LGA V 29 V 29 1.250 0 0.081 0.170 2.092 61.818 55.325 1.830 LGA E 30 E 30 1.318 0 0.057 0.585 2.690 55.000 51.717 2.690 LGA V 31 V 31 1.495 0 0.116 0.174 1.672 65.455 61.299 1.529 LGA R 32 R 32 1.192 0 0.126 1.053 7.670 78.182 41.653 7.670 LGA C 33 C 33 0.780 0 0.492 0.572 3.055 57.727 63.030 1.079 LGA S 34 S 34 2.553 0 0.258 0.734 4.852 22.727 22.727 3.280 LGA D 35 D 35 3.923 0 0.246 0.813 4.859 12.273 7.045 4.859 LGA T 36 T 36 1.157 0 0.253 1.139 2.244 65.909 60.260 2.244 LGA K 37 K 37 1.365 0 0.078 1.265 2.688 52.273 53.535 1.815 LGA Y 38 Y 38 1.448 0 0.033 1.325 3.063 73.636 52.879 3.063 LGA T 39 T 39 0.862 0 0.112 0.113 2.330 66.818 56.364 2.250 LGA L 40 L 40 0.997 0 0.082 1.003 3.626 73.636 50.227 3.626 LGA C 41 C 41 1.784 0 0.070 0.712 4.177 65.909 51.688 4.177 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all GDC_at NUMBER_OF_ATOMS_AA: 41 164 164 100.00 335 335 100.00 41 41 SUMMARY(RMSD_GDC): 2.126 2.182 3.020 47.339 38.007 24.435 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 41 41 4.0 41 2.13 76.829 83.892 1.842 LGA_LOCAL RMSD: 2.126 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.126 Number of assigned atoms: 41 Std_ASGN_ATOMS RMSD: 2.126 Standard rmsd on all 41 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.844247 * X + -0.359235 * Y + 0.397739 * Z + 0.001952 Y_new = -0.179628 * X + -0.509536 * Y + -0.841491 * Z + -1.998643 Z_new = 0.504956 * X + -0.781871 * Y + 0.365645 * Z + 7.316499 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.931951 -0.529331 -1.133359 [DEG: -167.9884 -30.3284 -64.9367 ] ZXZ: 0.441538 1.196470 2.568155 [DEG: 25.2982 68.5527 147.1444 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0955TS377_1 REMARK 2: T0955.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -gdc_sc -swap T0955TS377_1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 41 41 4.0 41 2.13 83.892 2.13 REMARK ---------------------------------------------------------- MOLECULE T0955TS377_1 PFRMAT TS TARGET T0955 MODEL 1 PARENT N/A ATOM 1 N SER 1 0.272 -13.571 -3.313 1.00 0.50 N ATOM 2 CA SER 1 0.104 -14.261 -2.038 1.00 0.50 C ATOM 3 C SER 1 0.625 -13.442 -0.852 1.00 0.50 C ATOM 4 O SER 1 0.480 -12.214 -0.806 1.00 0.50 O ATOM 5 CB SER 1 0.815 -15.603 -2.081 1.00 0.50 C ATOM 6 OG SER 1 0.584 -16.340 -0.906 1.00 0.50 O ATOM 14 N GLN 2 1.254 -14.134 0.099 1.00 0.20 N ATOM 15 CA GLN 2 1.754 -13.499 1.320 1.00 0.20 C ATOM 16 C GLN 2 2.888 -12.511 1.092 1.00 0.20 C ATOM 17 O GLN 2 2.965 -11.495 1.779 1.00 0.20 O ATOM 18 CB GLN 2 2.210 -14.559 2.319 1.00 0.20 C ATOM 19 CG GLN 2 1.080 -15.396 2.888 1.00 0.20 C ATOM 20 CD GLN 2 0.074 -14.537 3.630 1.00 0.20 C ATOM 21 OE1 GLN 2 0.470 -13.639 4.392 1.00 0.20 O ATOM 22 NE2 GLN 2 -1.217 -14.811 3.434 1.00 0.20 N ATOM 31 N GLU 3 3.753 -12.769 0.112 1.00 0.89 N ATOM 32 CA GLU 3 4.841 -11.834 -0.154 1.00 0.89 C ATOM 33 C GLU 3 4.270 -10.463 -0.500 1.00 0.89 C ATOM 34 O GLU 3 4.757 -9.429 -0.033 1.00 0.89 O ATOM 35 CB GLU 3 5.724 -12.338 -1.297 1.00 0.89 C ATOM 36 CG GLU 3 6.885 -11.421 -1.624 1.00 0.89 C ATOM 37 CD GLU 3 7.796 -11.946 -2.710 1.00 0.89 C ATOM 38 OE1 GLU 3 7.581 -13.034 -3.184 1.00 0.89 O ATOM 39 OE2 GLU 3 8.704 -11.224 -3.082 1.00 0.89 O ATOM 46 N THR 4 3.223 -10.469 -1.325 1.00 0.45 N ATOM 47 CA THR 4 2.571 -9.246 -1.750 1.00 0.45 C ATOM 48 C THR 4 1.928 -8.552 -0.571 1.00 0.45 C ATOM 49 O THR 4 2.152 -7.361 -0.351 1.00 0.45 O ATOM 50 CB THR 4 1.482 -9.534 -2.798 1.00 0.45 C ATOM 51 OG1 THR 4 2.072 -10.107 -3.977 1.00 0.45 O ATOM 52 CG2 THR 4 0.744 -8.275 -3.142 1.00 0.45 C ATOM 60 N ARG 5 1.186 -9.319 0.236 1.00 0.79 N ATOM 61 CA ARG 5 0.499 -8.749 1.383 1.00 0.79 C ATOM 62 C ARG 5 1.490 -8.052 2.305 1.00 0.79 C ATOM 63 O ARG 5 1.251 -6.921 2.749 1.00 0.79 O ATOM 64 CB ARG 5 -0.254 -9.823 2.162 1.00 0.79 C ATOM 65 CG ARG 5 -1.110 -9.287 3.320 1.00 0.79 C ATOM 66 CD ARG 5 -1.783 -10.378 4.098 1.00 0.79 C ATOM 67 NE ARG 5 -0.848 -11.184 4.872 1.00 0.79 N ATOM 68 CZ ARG 5 -0.335 -10.853 6.065 1.00 0.79 C ATOM 69 NH1 ARG 5 -0.656 -9.724 6.666 1.00 0.79 N ATOM 70 NH2 ARG 5 0.496 -11.700 6.616 1.00 0.79 N ATOM 84 N LYS 6 2.611 -8.716 2.594 1.00 0.72 N ATOM 85 CA LYS 6 3.601 -8.142 3.489 1.00 0.72 C ATOM 86 C LYS 6 4.255 -6.888 2.910 1.00 0.72 C ATOM 87 O LYS 6 4.412 -5.890 3.620 1.00 0.72 O ATOM 88 CB LYS 6 4.669 -9.183 3.812 1.00 0.72 C ATOM 89 CG LYS 6 4.182 -10.322 4.706 1.00 0.72 C ATOM 90 CD LYS 6 5.282 -11.341 4.952 1.00 0.72 C ATOM 91 CE LYS 6 4.790 -12.493 5.820 1.00 0.72 C ATOM 92 NZ LYS 6 5.862 -13.509 6.049 1.00 0.72 N ATOM 106 N LYS 7 4.575 -6.889 1.608 1.00 0.37 N ATOM 107 CA LYS 7 5.181 -5.695 1.025 1.00 0.37 C ATOM 108 C LYS 7 4.198 -4.540 1.031 1.00 0.37 C ATOM 109 O LYS 7 4.568 -3.409 1.353 1.00 0.37 O ATOM 110 CB LYS 7 5.666 -5.960 -0.400 1.00 0.37 C ATOM 111 CG LYS 7 6.903 -6.854 -0.486 1.00 0.37 C ATOM 112 CD LYS 7 7.314 -7.107 -1.928 1.00 0.37 C ATOM 113 CE LYS 7 8.555 -7.991 -2.000 1.00 0.37 C ATOM 114 NZ LYS 7 8.944 -8.295 -3.407 1.00 0.37 N ATOM 128 N CYS 8 2.937 -4.832 0.723 1.00 0.79 N ATOM 129 CA CYS 8 1.895 -3.827 0.716 1.00 0.79 C ATOM 130 C CYS 8 1.631 -3.271 2.105 1.00 0.79 C ATOM 131 O CYS 8 1.426 -2.064 2.266 1.00 0.79 O ATOM 132 CB CYS 8 0.636 -4.405 0.092 1.00 0.79 C ATOM 133 SG CYS 8 0.775 -4.636 -1.721 1.00 0.79 S ATOM 139 N THR 9 1.666 -4.136 3.118 1.00 0.73 N ATOM 140 CA THR 9 1.430 -3.707 4.484 1.00 0.73 C ATOM 141 C THR 9 2.523 -2.754 4.950 1.00 0.73 C ATOM 142 O THR 9 2.235 -1.673 5.482 1.00 0.73 O ATOM 143 CB THR 9 1.387 -4.921 5.425 1.00 0.73 C ATOM 144 OG1 THR 9 0.310 -5.791 5.033 1.00 0.73 O ATOM 145 CG2 THR 9 1.191 -4.464 6.861 1.00 0.73 C ATOM 153 N GLU 10 3.784 -3.130 4.724 1.00 0.68 N ATOM 154 CA GLU 10 4.862 -2.261 5.159 1.00 0.68 C ATOM 155 C GLU 10 4.892 -0.978 4.344 1.00 0.68 C ATOM 156 O GLU 10 5.132 0.102 4.890 1.00 0.68 O ATOM 157 CB GLU 10 6.201 -2.989 5.102 1.00 0.68 C ATOM 158 CG GLU 10 6.343 -4.100 6.156 1.00 0.68 C ATOM 159 CD GLU 10 6.262 -3.572 7.588 1.00 0.68 C ATOM 160 OE1 GLU 10 6.981 -2.655 7.903 1.00 0.68 O ATOM 161 OE2 GLU 10 5.477 -4.094 8.365 1.00 0.68 O ATOM 168 N MET 11 4.604 -1.048 3.048 1.00 0.21 N ATOM 169 CA MET 11 4.608 0.199 2.326 1.00 0.21 C ATOM 170 C MET 11 3.452 1.090 2.744 1.00 0.21 C ATOM 171 O MET 11 3.612 2.309 2.796 1.00 0.21 O ATOM 172 CB MET 11 4.657 -0.016 0.845 1.00 0.21 C ATOM 173 CG MET 11 5.973 -0.502 0.352 1.00 0.21 C ATOM 174 SD MET 11 7.260 0.605 0.907 1.00 0.21 S ATOM 175 CE MET 11 6.682 2.146 0.187 1.00 0.21 C ATOM 185 N LYS 12 2.317 0.510 3.148 1.00 0.10 N ATOM 186 CA LYS 12 1.221 1.337 3.624 1.00 0.10 C ATOM 187 C LYS 12 1.726 2.206 4.752 1.00 0.10 C ATOM 188 O LYS 12 1.568 3.426 4.731 1.00 0.10 O ATOM 189 CB LYS 12 0.035 0.485 4.076 1.00 0.10 C ATOM 190 CG LYS 12 -1.151 1.286 4.589 1.00 0.10 C ATOM 191 CD LYS 12 -2.341 0.391 4.892 1.00 0.10 C ATOM 192 CE LYS 12 -3.528 1.202 5.389 1.00 0.10 C ATOM 193 NZ LYS 12 -4.702 0.338 5.698 1.00 0.10 N ATOM 207 N LYS 13 2.458 1.589 5.682 1.00 0.15 N ATOM 208 CA LYS 13 3.025 2.300 6.822 1.00 0.15 C ATOM 209 C LYS 13 3.991 3.407 6.365 1.00 0.15 C ATOM 210 O LYS 13 4.082 4.472 7.000 1.00 0.15 O ATOM 211 CB LYS 13 3.794 1.314 7.705 1.00 0.15 C ATOM 212 CG LYS 13 2.950 0.285 8.440 1.00 0.15 C ATOM 213 CD LYS 13 3.862 -0.689 9.189 1.00 0.15 C ATOM 214 CE LYS 13 3.089 -1.798 9.881 1.00 0.15 C ATOM 215 NZ LYS 13 4.012 -2.804 10.503 1.00 0.15 N ATOM 229 N LYS 14 4.713 3.137 5.266 1.00 0.22 N ATOM 230 CA LYS 14 5.704 4.047 4.698 1.00 0.22 C ATOM 231 C LYS 14 5.174 5.059 3.664 1.00 0.22 C ATOM 232 O LYS 14 5.903 5.991 3.302 1.00 0.22 O ATOM 233 CB LYS 14 6.839 3.242 4.076 1.00 0.22 C ATOM 234 CG LYS 14 7.643 2.425 5.086 1.00 0.22 C ATOM 235 CD LYS 14 8.723 1.605 4.412 1.00 0.22 C ATOM 236 CE LYS 14 9.518 0.801 5.430 1.00 0.22 C ATOM 237 NZ LYS 14 10.576 -0.025 4.784 1.00 0.22 N ATOM 251 N PHE 15 3.923 4.944 3.193 1.00 0.66 N ATOM 252 CA PHE 15 3.471 5.924 2.193 1.00 0.66 C ATOM 253 C PHE 15 3.019 7.206 2.890 1.00 0.66 C ATOM 254 O PHE 15 1.822 7.476 3.062 1.00 0.66 O ATOM 255 CB PHE 15 2.346 5.429 1.263 1.00 0.66 C ATOM 256 CG PHE 15 2.698 4.367 0.222 1.00 0.66 C ATOM 257 CD1 PHE 15 2.144 3.107 0.261 1.00 0.66 C ATOM 258 CD2 PHE 15 3.592 4.650 -0.795 1.00 0.66 C ATOM 259 CE1 PHE 15 2.447 2.151 -0.688 1.00 0.66 C ATOM 260 CE2 PHE 15 3.912 3.695 -1.749 1.00 0.66 C ATOM 261 CZ PHE 15 3.338 2.446 -1.700 1.00 0.66 C ATOM 271 N LYS 16 4.009 7.968 3.338 1.00 0.53 N ATOM 272 CA LYS 16 3.763 9.133 4.164 1.00 0.53 C ATOM 273 C LYS 16 3.045 10.191 3.360 1.00 0.53 C ATOM 274 O LYS 16 3.359 10.420 2.195 1.00 0.53 O ATOM 275 CB LYS 16 5.066 9.708 4.717 1.00 0.53 C ATOM 276 CG LYS 16 5.903 8.719 5.539 1.00 0.53 C ATOM 277 CD LYS 16 5.132 8.113 6.699 1.00 0.53 C ATOM 278 CE LYS 16 6.045 7.254 7.567 1.00 0.53 C ATOM 279 NZ LYS 16 5.282 6.452 8.555 1.00 0.53 N ATOM 293 N ASN 17 2.097 10.859 4.008 1.00 0.82 N ATOM 294 CA ASN 17 1.275 11.907 3.406 1.00 0.82 C ATOM 295 C ASN 17 0.443 11.385 2.227 1.00 0.82 C ATOM 296 O ASN 17 0.081 12.155 1.320 1.00 0.82 O ATOM 297 CB ASN 17 2.132 13.085 2.967 1.00 0.82 C ATOM 298 CG ASN 17 2.876 13.708 4.117 1.00 0.82 C ATOM 299 OD1 ASN 17 2.345 13.822 5.229 1.00 0.82 O ATOM 300 ND2 ASN 17 4.099 14.105 3.876 1.00 0.82 N ATOM 307 N CYS 18 0.079 10.092 2.286 1.00 0.69 N ATOM 308 CA CYS 18 -0.765 9.515 1.252 1.00 0.69 C ATOM 309 C CYS 18 -1.970 8.774 1.828 1.00 0.69 C ATOM 310 O CYS 18 -1.956 8.329 2.976 1.00 0.69 O ATOM 311 CB CYS 18 0.027 8.521 0.416 1.00 0.69 C ATOM 312 SG CYS 18 1.593 9.150 -0.259 1.00 0.69 S ATOM 317 N GLU 19 -2.993 8.608 0.990 1.00 0.37 N ATOM 318 CA GLU 19 -4.152 7.775 1.281 1.00 0.37 C ATOM 319 C GLU 19 -3.919 6.435 0.605 1.00 0.37 C ATOM 320 O GLU 19 -3.686 6.376 -0.605 1.00 0.37 O ATOM 321 CB GLU 19 -5.453 8.405 0.770 1.00 0.37 C ATOM 322 CG GLU 19 -6.695 7.578 1.080 1.00 0.37 C ATOM 323 CD GLU 19 -7.997 8.166 0.569 1.00 0.37 C ATOM 324 OE1 GLU 19 -8.010 9.246 0.007 1.00 0.37 O ATOM 325 OE2 GLU 19 -9.000 7.503 0.744 1.00 0.37 O ATOM 332 N VAL 20 -3.968 5.357 1.371 1.00 0.77 N ATOM 333 CA VAL 20 -3.666 4.055 0.799 1.00 0.77 C ATOM 334 C VAL 20 -4.887 3.140 0.768 1.00 0.77 C ATOM 335 O VAL 20 -5.537 2.919 1.794 1.00 0.77 O ATOM 336 CB VAL 20 -2.549 3.394 1.620 1.00 0.77 C ATOM 337 CG1 VAL 20 -2.239 2.059 1.049 1.00 0.77 C ATOM 338 CG2 VAL 20 -1.302 4.278 1.623 1.00 0.77 C ATOM 348 N ARG 21 -5.180 2.598 -0.415 1.00 0.60 N ATOM 349 CA ARG 21 -6.314 1.703 -0.614 1.00 0.60 C ATOM 350 C ARG 21 -5.854 0.303 -1.001 1.00 0.60 C ATOM 351 O ARG 21 -5.253 0.103 -2.063 1.00 0.60 O ATOM 352 CB ARG 21 -7.224 2.214 -1.722 1.00 0.60 C ATOM 353 CG ARG 21 -7.846 3.598 -1.525 1.00 0.60 C ATOM 354 CD ARG 21 -8.861 3.616 -0.433 1.00 0.60 C ATOM 355 NE ARG 21 -9.532 4.908 -0.341 1.00 0.60 N ATOM 356 CZ ARG 21 -10.673 5.232 -0.982 1.00 0.60 C ATOM 357 NH1 ARG 21 -11.289 4.357 -1.748 1.00 0.60 N ATOM 358 NH2 ARG 21 -11.163 6.447 -0.827 1.00 0.60 N ATOM 372 N CYS 22 -6.082 -0.671 -0.115 1.00 0.68 N ATOM 373 CA CYS 22 -5.622 -2.022 -0.417 1.00 0.68 C ATOM 374 C CYS 22 -6.722 -2.976 -0.874 1.00 0.68 C ATOM 375 O CYS 22 -7.720 -3.220 -0.188 1.00 0.68 O ATOM 376 CB CYS 22 -4.897 -2.678 0.749 1.00 0.68 C ATOM 377 SG CYS 22 -4.290 -4.351 0.307 1.00 0.68 S ATOM 383 N ASP 23 -6.505 -3.557 -2.031 1.00 0.91 N ATOM 384 CA ASP 23 -7.391 -4.537 -2.589 1.00 0.91 C ATOM 385 C ASP 23 -7.097 -5.864 -1.985 1.00 0.91 C ATOM 386 O ASP 23 -6.312 -6.633 -2.541 1.00 0.91 O ATOM 387 CB ASP 23 -7.182 -4.676 -4.087 1.00 0.91 C ATOM 388 CG ASP 23 -8.083 -5.746 -4.720 1.00 0.91 C ATOM 389 OD1 ASP 23 -8.684 -6.555 -3.993 1.00 0.91 O ATOM 390 OD2 ASP 23 -8.094 -5.824 -5.924 1.00 0.91 O ATOM 395 N GLU 24 -7.791 -6.164 -0.906 1.00 0.34 N ATOM 396 CA GLU 24 -7.569 -7.369 -0.118 1.00 0.34 C ATOM 397 C GLU 24 -7.798 -8.677 -0.886 1.00 0.34 C ATOM 398 O GLU 24 -7.389 -9.736 -0.413 1.00 0.34 O ATOM 399 CB GLU 24 -8.448 -7.339 1.133 1.00 0.34 C ATOM 400 CG GLU 24 -8.038 -6.275 2.154 1.00 0.34 C ATOM 401 CD GLU 24 -8.921 -6.249 3.384 1.00 0.34 C ATOM 402 OE1 GLU 24 -9.897 -6.961 3.409 1.00 0.34 O ATOM 403 OE2 GLU 24 -8.610 -5.524 4.303 1.00 0.34 O ATOM 410 N SER 25 -8.514 -8.644 -2.022 1.00 0.42 N ATOM 411 CA SER 25 -8.752 -9.893 -2.743 1.00 0.42 C ATOM 412 C SER 25 -7.543 -10.288 -3.606 1.00 0.42 C ATOM 413 O SER 25 -7.465 -11.421 -4.090 1.00 0.42 O ATOM 414 CB SER 25 -10.015 -9.805 -3.593 1.00 0.42 C ATOM 415 OG SER 25 -9.870 -8.946 -4.695 1.00 0.42 O ATOM 421 N ASN 26 -6.610 -9.344 -3.803 1.00 0.72 N ATOM 422 CA ASN 26 -5.401 -9.553 -4.596 1.00 0.72 C ATOM 423 C ASN 26 -4.197 -9.105 -3.777 1.00 0.72 C ATOM 424 O ASN 26 -3.045 -9.392 -4.104 1.00 0.72 O ATOM 425 CB ASN 26 -5.467 -8.796 -5.919 1.00 0.72 C ATOM 426 CG ASN 26 -6.555 -9.296 -6.869 1.00 0.72 C ATOM 427 OD1 ASN 26 -6.387 -10.371 -7.463 1.00 0.72 O ATOM 428 ND2 ASN 26 -7.627 -8.552 -7.048 1.00 0.72 N ATOM 435 N HIS 27 -4.513 -8.390 -2.702 1.00 0.22 N ATOM 436 CA HIS 27 -3.594 -7.706 -1.793 1.00 0.22 C ATOM 437 C HIS 27 -2.781 -6.637 -2.506 1.00 0.22 C ATOM 438 O HIS 27 -1.634 -6.400 -2.146 1.00 0.22 O ATOM 439 CB HIS 27 -2.631 -8.686 -1.114 1.00 0.22 C ATOM 440 CG HIS 27 -3.311 -9.740 -0.317 1.00 0.22 C ATOM 441 ND1 HIS 27 -3.951 -9.476 0.879 1.00 0.22 N ATOM 442 CD2 HIS 27 -3.466 -11.061 -0.542 1.00 0.22 C ATOM 443 CE1 HIS 27 -4.474 -10.593 1.348 1.00 0.22 C ATOM 444 NE2 HIS 27 -4.191 -11.571 0.507 1.00 0.22 N ATOM 452 N CYS 28 -3.398 -5.958 -3.464 1.00 0.36 N ATOM 453 CA CYS 28 -2.715 -4.912 -4.228 1.00 0.36 C ATOM 454 C CYS 28 -3.005 -3.535 -3.653 1.00 0.36 C ATOM 455 O CYS 28 -4.053 -3.322 -3.053 1.00 0.36 O ATOM 456 CB CYS 28 -3.149 -4.938 -5.694 1.00 0.36 C ATOM 457 SG CYS 28 -2.733 -6.465 -6.611 1.00 0.36 S ATOM 462 N VAL 29 -2.096 -2.593 -3.846 1.00 0.41 N ATOM 463 CA VAL 29 -2.269 -1.235 -3.338 1.00 0.41 C ATOM 464 C VAL 29 -2.226 -0.076 -4.341 1.00 0.41 C ATOM 465 O VAL 29 -1.332 0.030 -5.192 1.00 0.41 O ATOM 466 CB VAL 29 -1.226 -0.989 -2.237 1.00 0.41 C ATOM 467 CG1 VAL 29 -1.268 0.397 -1.810 1.00 0.41 C ATOM 468 CG2 VAL 29 -1.554 -1.828 -1.053 1.00 0.41 C ATOM 478 N GLU 30 -3.215 0.817 -4.197 1.00 0.51 N ATOM 479 CA GLU 30 -3.301 2.058 -4.967 1.00 0.51 C ATOM 480 C GLU 30 -3.113 3.210 -3.972 1.00 0.51 C ATOM 481 O GLU 30 -3.783 3.252 -2.932 1.00 0.51 O ATOM 482 CB GLU 30 -4.645 2.156 -5.703 1.00 0.51 C ATOM 483 CG GLU 30 -4.803 3.387 -6.612 1.00 0.51 C ATOM 484 CD GLU 30 -6.124 3.394 -7.383 1.00 0.51 C ATOM 485 OE1 GLU 30 -6.951 2.558 -7.104 1.00 0.51 O ATOM 486 OE2 GLU 30 -6.287 4.222 -8.273 1.00 0.51 O ATOM 493 N VAL 31 -2.172 4.119 -4.252 1.00 0.91 N ATOM 494 CA VAL 31 -1.880 5.183 -3.289 1.00 0.91 C ATOM 495 C VAL 31 -2.032 6.606 -3.824 1.00 0.91 C ATOM 496 O VAL 31 -1.372 6.983 -4.793 1.00 0.91 O ATOM 497 CB VAL 31 -0.433 5.053 -2.870 1.00 0.91 C ATOM 498 CG1 VAL 31 -0.105 6.058 -1.891 1.00 0.91 C ATOM 499 CG2 VAL 31 -0.171 3.723 -2.416 1.00 0.91 C ATOM 509 N ARG 32 -2.852 7.419 -3.155 1.00 0.96 N ATOM 510 CA ARG 32 -3.053 8.821 -3.543 1.00 0.96 C ATOM 511 C ARG 32 -2.224 9.744 -2.656 1.00 0.96 C ATOM 512 O ARG 32 -2.454 9.807 -1.451 1.00 0.96 O ATOM 513 CB ARG 32 -4.510 9.218 -3.387 1.00 0.96 C ATOM 514 CG ARG 32 -4.835 10.644 -3.800 1.00 0.96 C ATOM 515 CD ARG 32 -6.286 10.961 -3.606 1.00 0.96 C ATOM 516 NE ARG 32 -6.651 11.018 -2.177 1.00 0.96 N ATOM 517 CZ ARG 32 -6.554 12.115 -1.407 1.00 0.96 C ATOM 518 NH1 ARG 32 -6.111 13.258 -1.898 1.00 0.96 N ATOM 519 NH2 ARG 32 -6.916 12.017 -0.149 1.00 0.96 N ATOM 533 N CYS 33 -1.264 10.469 -3.210 1.00 0.39 N ATOM 534 CA CYS 33 -0.410 11.283 -2.350 1.00 0.39 C ATOM 535 C CYS 33 -0.599 12.756 -2.578 1.00 0.39 C ATOM 536 O CYS 33 -0.926 13.175 -3.686 1.00 0.39 O ATOM 537 CB CYS 33 1.025 10.930 -2.588 1.00 0.39 C ATOM 538 SG CYS 33 1.359 9.249 -2.272 1.00 0.39 S ATOM 543 N SER 34 -0.234 13.562 -1.581 1.00 0.69 N ATOM 544 CA SER 34 -0.352 15.016 -1.707 1.00 0.69 C ATOM 545 C SER 34 0.437 15.614 -2.892 1.00 0.69 C ATOM 546 O SER 34 0.155 16.734 -3.317 1.00 0.69 O ATOM 547 CB SER 34 0.094 15.667 -0.412 1.00 0.69 C ATOM 548 OG SER 34 1.460 15.461 -0.189 1.00 0.69 O ATOM 554 N ASP 35 1.420 14.879 -3.415 1.00 0.62 N ATOM 555 CA ASP 35 2.181 15.336 -4.574 1.00 0.62 C ATOM 556 C ASP 35 2.523 14.232 -5.594 1.00 0.62 C ATOM 557 O ASP 35 3.411 14.427 -6.425 1.00 0.62 O ATOM 558 CB ASP 35 3.466 16.035 -4.109 1.00 0.62 C ATOM 559 CG ASP 35 4.409 15.124 -3.298 1.00 0.62 C ATOM 560 OD1 ASP 35 4.068 13.984 -3.079 1.00 0.62 O ATOM 561 OD2 ASP 35 5.449 15.591 -2.901 1.00 0.62 O ATOM 566 N THR 36 1.865 13.065 -5.507 1.00 0.47 N ATOM 567 CA THR 36 2.187 11.940 -6.410 1.00 0.47 C ATOM 568 C THR 36 1.132 10.808 -6.393 1.00 0.47 C ATOM 569 O THR 36 0.026 10.955 -5.864 1.00 0.47 O ATOM 570 CB THR 36 3.634 11.378 -6.148 1.00 0.47 C ATOM 571 OG1 THR 36 3.991 10.453 -7.196 1.00 0.47 O ATOM 572 CG2 THR 36 3.752 10.682 -4.814 1.00 0.47 C ATOM 580 N LYS 37 1.478 9.691 -7.024 1.00 0.23 N ATOM 581 CA LYS 37 0.636 8.497 -7.023 1.00 0.23 C ATOM 582 C LYS 37 1.499 7.241 -7.129 1.00 0.23 C ATOM 583 O LYS 37 2.469 7.222 -7.893 1.00 0.23 O ATOM 584 CB LYS 37 -0.402 8.528 -8.155 1.00 0.23 C ATOM 585 CG LYS 37 -1.399 7.374 -8.060 1.00 0.23 C ATOM 586 CD LYS 37 -2.546 7.446 -9.021 1.00 0.23 C ATOM 587 CE LYS 37 -3.505 6.311 -8.676 1.00 0.23 C ATOM 588 NZ LYS 37 -4.718 6.286 -9.511 1.00 0.23 N ATOM 602 N TYR 38 1.148 6.196 -6.371 1.00 0.42 N ATOM 603 CA TYR 38 1.901 4.938 -6.457 1.00 0.42 C ATOM 604 C TYR 38 1.013 3.725 -6.725 1.00 0.42 C ATOM 605 O TYR 38 -0.166 3.682 -6.349 1.00 0.42 O ATOM 606 CB TYR 38 2.689 4.624 -5.173 1.00 0.42 C ATOM 607 CG TYR 38 3.689 5.642 -4.714 1.00 0.42 C ATOM 608 CD1 TYR 38 3.310 6.614 -3.815 1.00 0.42 C ATOM 609 CD2 TYR 38 4.991 5.592 -5.169 1.00 0.42 C ATOM 610 CE1 TYR 38 4.237 7.527 -3.362 1.00 0.42 C ATOM 611 CE2 TYR 38 5.912 6.514 -4.721 1.00 0.42 C ATOM 612 CZ TYR 38 5.533 7.477 -3.817 1.00 0.42 C ATOM 613 OH TYR 38 6.447 8.396 -3.359 1.00 0.42 O ATOM 623 N THR 39 1.619 2.716 -7.349 1.00 0.19 N ATOM 624 CA THR 39 0.989 1.414 -7.534 1.00 0.19 C ATOM 625 C THR 39 1.939 0.337 -7.016 1.00 0.19 C ATOM 626 O THR 39 3.123 0.333 -7.362 1.00 0.19 O ATOM 627 CB THR 39 0.637 1.150 -9.008 1.00 0.19 C ATOM 628 OG1 THR 39 -0.263 2.167 -9.470 1.00 0.19 O ATOM 629 CG2 THR 39 -0.032 -0.214 -9.147 1.00 0.19 C ATOM 637 N LEU 40 1.423 -0.564 -6.188 1.00 0.28 N ATOM 638 CA LEU 40 2.227 -1.629 -5.598 1.00 0.28 C ATOM 639 C LEU 40 1.498 -2.960 -5.491 1.00 0.28 C ATOM 640 O LEU 40 0.385 -3.011 -4.979 1.00 0.28 O ATOM 641 CB LEU 40 2.641 -1.187 -4.195 1.00 0.28 C ATOM 642 CG LEU 40 3.380 -2.200 -3.349 1.00 0.28 C ATOM 643 CD1 LEU 40 4.741 -2.488 -3.931 1.00 0.28 C ATOM 644 CD2 LEU 40 3.481 -1.654 -1.981 1.00 0.28 C ATOM 656 N CYS 41 2.109 -4.046 -5.954 1.00 0.43 N ATOM 657 CA CYS 41 1.469 -5.346 -5.782 1.00 0.43 C ATOM 658 C CYS 41 2.430 -6.462 -6.179 1.00 0.43 C ATOM 659 O CYS 41 3.213 -6.931 -5.351 1.00 0.43 O ATOM 660 OXT CYS 41 2.674 -6.599 -7.376 1.00 0.43 O ATOM 661 CB CYS 41 0.192 -5.476 -6.622 1.00 0.43 C ATOM 662 SG CYS 41 -0.787 -6.944 -6.190 1.00 0.43 S TER END